RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 IGLV7-43P04211 117 aa4.86□□□□□ -1.63
HPS4-206ENST00000439453 HERC1Q15751 4861 aa4.86□□□□□ -1.63
HPS4-206ENST00000439453 KRTAP16-1A8MUX0 517 aa4.83□□□□□ -1.64
HPS4-206ENST00000439453 CRIPTQ9P021 101 aa4.81□□□□□ -1.64
HPS4-206ENST00000439453 KRTAP13-2Q52LG2 175 aa4.77□□□□□ -1.65
HPS4-206ENST00000439453 A0A1B0GU33 70 aa4.75□□□□□ -1.65
HPS4-206ENST00000439453 A8MUU9 505 aa4.73□□□□□ -1.65
HPS4-206ENST00000439453 H0YAA0 97 aa4.72□□□□□ -1.65
HPS4-206ENST00000439453 MT1HL1P0DM35 61 aa4.72□□□□□ -1.65
HPS4-206ENST00000439453 HMCN2Q8NDA2 5059 aa4.72□□□□□ -1.65
HPS4-206ENST00000439453 KRTAP25-1Q3LHN0 102 aa4.71□□□□□ -1.66
HPS4-206ENST00000439453 TYMSOSQ8TAI1 123 aa4.71□□□□□ -1.66
HPS4-206ENST00000439453 A0A0D9SG42 100 aa4.7□□□□□ -1.66
HPS4-206ENST00000439453 LINC00304Q8N9R0 145 aa4.7□□□□□ -1.66
HPS4-206ENST00000439453 KRTAP1-4P0C5Y4 121 aa4.67□□□□□ -1.66
HPS4-206ENST00000439453 ROMO1P60602 79 aa4.66□□□□□ -1.66
HPS4-206ENST00000439453 C9orf92A6NGG3 77 aa4.65□□□□□ -1.66
HPS4-206ENST00000439453 KRTAP10-8P60410 259 aa4.65□□□□□ -1.67
HPS4-206ENST00000439453 H1FX-AS1Q4G0G2 97 aa4.64□□□□□ -1.67
HPS4-206ENST00000439453 LPAP08519 4548 aa4.61□□□□□ -1.67
HPS4-206ENST00000439453 KRTAP3-1Q9BYR8 98 aa4.6□□□□□ -1.67
HPS4-206ENST00000439453 J3QL48 77 aa4.59□□□□□ -1.68
HPS4-206ENST00000439453 LRP2P98164 4655 aa4.57□□□□□ -1.68
HPS4-206ENST00000439453 NDUFAF8A1L188 74 aa4.55□□□□□ -1.68
HPS4-206ENST00000439453 UBR4Q5T4S7 5183 aa4.55□□□□□ -1.68
HPS4-206ENST00000439453 RPL37P61927 97 aaKnown RBP4.54□□□□□ -1.68
HPS4-206ENST00000439453 COX6B2Q6YFQ2 88 aa4.54□□□□□ -1.68
HPS4-206ENST00000439453 C20orf166-AS1Q96NR2 134 aa4.54□□□□□ -1.68
HPS4-206ENST00000439453 RPS29P62273 56 aaKnown RBP4.53□□□□□ -1.68
HPS4-206ENST00000439453 P0C880 135 aa4.53□□□□□ -1.69
HPS4-206ENST00000439453 MUC17Q685J3 4493 aa4.46□□□□□ -1.7
HPS4-206ENST00000439453 TPRXLQ17RH7 258 aa4.44□□□□□ -1.7
HPS4-206ENST00000439453 RNF213Q63HN8 5207 aa4.43□□□□□ -1.7
HPS4-206ENST00000439453 KRTAP10-6P60371 365 aaPredicted RBP4.43□□□□□ -1.7
HPS4-206ENST00000439453 KRTAP13-4Q3LI77 160 aa4.42□□□□□ -1.7
HPS4-206ENST00000439453 LUZP6Q538Z0 58 aa4.42□□□□□ -1.7
HPS4-206ENST00000439453 C10orf95Q9H7T3 257 aa4.41□□□□□ -1.7
HPS4-206ENST00000439453 KRTAP3-3Q9BYR6 98 aa4.39□□□□□ -1.71
HPS4-206ENST00000439453 MUC2Q02817 5179 aa4.38□□□□□ -1.71
HPS4-206ENST00000439453 KRTAP3-2Q9BYR7 98 aa4.38□□□□□ -1.71
HPS4-206ENST00000439453 S4R3F8 94 aa4.36□□□□□ -1.71
HPS4-206ENST00000439453 A0A0A0MQY5 61 aa4.36□□□□□ -1.71
HPS4-206ENST00000439453 KRTAP15-1Q3LI76 137 aa4.35□□□□□ -1.71
HPS4-206ENST00000439453 KRTAP12-2P59991 146 aa4.3□□□□□ -1.72
HPS4-206ENST00000439453 KRTAP12-1P59990 96 aa4.25□□□□□ -1.73
HPS4-206ENST00000439453 R4GN34 69 aa4.25□□□□□ -1.73
HPS4-206ENST00000439453 FAT4Q6V0I7 4981 aa4.24□□□□□ -1.73
HPS4-206ENST00000439453 XP32Q5T750 250 aa4.23□□□□□ -1.73
HPS4-206ENST00000439453 KRTAP4-1Q9BYQ7 146 aa4.23□□□□□ -1.73
HPS4-206ENST00000439453 CAMK2N1Q7Z7J9 78 aa4.23□□□□□ -1.73
HPS4-206ENST00000439453 M0QZ58 72 aa4.22□□□□□ -1.73
HPS4-206ENST00000439453 FLGP20930 4061 aaPredicted RBP4.16□□□□□ -1.74
HPS4-206ENST00000439453 PLAC4Q8WY50 150 aa4.15□□□□□ -1.74
HPS4-206ENST00000439453 KRTAP19-2Q3LHN2 52 aa4.14□□□□□ -1.75
HPS4-206ENST00000439453 LCE2AQ5TA79 106 aaPredicted RBP4.12□□□□□ -1.75
HPS4-206ENST00000439453 SEC61BP60468 96 aaKnown RBP4.1□□□□□ -1.75
HPS4-206ENST00000439453 LCE2CQ5TA81 110 aa4.1□□□□□ -1.75
HPS4-206ENST00000439453 M0R2T5 61 aa4□□□□□ -1.77
HPS4-206ENST00000439453 MT1HP80294 61 aa4□□□□□ -1.77
HPS4-206ENST00000439453 PP632Q6XCG6 107 aa3.95□□□□□ -1.78
HPS4-206ENST00000439453 LORP23490 312 aaPredicted RBP3.93□□□□□ -1.78
HPS4-206ENST00000439453 TNP1P09430 55 aa3.89□□□□□ -1.79
HPS4-206ENST00000439453 KRTAP9-2Q9BYQ4 174 aa3.85□□□□□ -1.79
HPS4-206ENST00000439453 KRTAP9-8Q9BYQ0 159 aa3.82□□□□□ -1.8
HPS4-206ENST00000439453 LCE2DQ5TA82 110 aaPredicted RBP3.81□□□□□ -1.8
HPS4-206ENST00000439453 MT2AP02795 61 aa3.76□□□□□ -1.81
HPS4-206ENST00000439453 MT1FP04733 61 aa3.74□□□□□ -1.81
HPS4-206ENST00000439453 SPRR5A0A1B0GTR4 108 aa3.73□□□□□ -1.81
HPS4-206ENST00000439453 USH2AO75445 5202 aa3.72□□□□□ -1.81
HPS4-206ENST00000439453 KRTAP23-1A1A580 65 aa3.71□□□□□ -1.82
HPS4-206ENST00000439453 KRTAP9-3Q9BYQ3 159 aa3.69□□□□□ -1.82
HPS4-206ENST00000439453 FSIP2Q5CZC0 6907 aa3.69□□□□□ -1.82
HPS4-206ENST00000439453 SSPOA2VEC9 5147 aa3.67□□□□□ -1.82
HPS4-206ENST00000439453 LCE2BO14633 110 aa3.66□□□□□ -1.82
HPS4-206ENST00000439453 KRTAP9-6A0A140TA67 174 aa3.66□□□□□ -1.82
HPS4-206ENST00000439453 CRCT1Q9UGL9 99 aa3.63□□□□□ -1.83
HPS4-206ENST00000439453 KRTAP10-10P60014 251 aa3.61□□□□□ -1.83
HPS4-206ENST00000439453 PRO2289Q9P1D8 64 aa3.6□□□□□ -1.83
HPS4-206ENST00000439453 KRTAP19-1Q8IUB9 90 aa3.56□□□□□ -1.84
HPS4-206ENST00000439453 FCGBPQ9Y6R7 5405 aaPredicted RBP3.54□□□□□ -1.84
HPS4-206ENST00000439453 INE1O15225 51 aa3.53□□□□□ -1.84
HPS4-206ENST00000439453 LCE3AQ5TA76 89 aa3.51□□□□□ -1.85
HPS4-206ENST00000439453 SPRR2GQ9BYE4 73 aa3.5□□□□□ -1.85
HPS4-206ENST00000439453 KRTAP19-6Q3LI70 58 aa3.48□□□□□ -1.85
HPS4-206ENST00000439453 MT1BP07438 61 aa3.48□□□□□ -1.85
HPS4-206ENST00000439453 KRTAP19-8Q3LI54 63 aa3.47□□□□□ -1.85
HPS4-206ENST00000439453 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.41□□□□□ -1.86
HPS4-206ENST00000439453 KRTAP8-1Q8IUC2 63 aa3.41□□□□□ -1.86
HPS4-206ENST00000439453 MACF1Q9UPN3 7388 aaKnown RBP3.38□□□□□ -1.87
HPS4-206ENST00000439453 KRTAP10-5P60370 271 aa3.34□□□□□ -1.88
HPS4-206ENST00000439453 KRTAP12-3P60328 96 aa3.33□□□□□ -1.88
HPS4-206ENST00000439453 SYNE2Q8WXH0 6885 aaKnown RBP3.31□□□□□ -1.88
HPS4-206ENST00000439453 KRTAP9-7A8MTY7 169 aa3.3□□□□□ -1.88
HPS4-206ENST00000439453 KRTAP10-12P60413 245 aa3.3□□□□□ -1.88
HPS4-206ENST00000439453 MT1XP80297 61 aa3.28□□□□□ -1.88
HPS4-206ENST00000439453 KMT2DO14686 5537 aa3.26□□□□□ -1.89
HPS4-206ENST00000439453 KRTAP10-7P60409 375 aaPredicted RBP3.21□□□□□ -1.9
HPS4-206ENST00000439453 KRTAP6-3Q3LI67 103 aa3.2□□□□□ -1.9
HPS4-206ENST00000439453 MUC12Q9UKN1 5478 aa3.2□□□□□ -1.9
HPS4-206ENST00000439453 KRTAP5-9P26371 169 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms