RNA–Protein interactions for RNA: ENST00000430321.5

UBR3-204, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 5

Gene UBR3, Length 5,411 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-204ENST00000430321 KRTAP19-1Q8IUB9 90 aa2.14□□□□□ -2.07
UBR3-204ENST00000430321 VPS13DQ5THJ4 4388 aa2.14□□□□□ -2.07
UBR3-204ENST00000430321 FAT3Q8TDW7 4589 aa2.13□□□□□ -2.07
UBR3-204ENST00000430321 FAT1Q14517 4588 aa2.13□□□□□ -2.07
UBR3-204ENST00000430321 RANBP2P49792 3224 aaKnown RBP2.13□□□□□ -2.07
UBR3-204ENST00000430321 LRP2P98164 4655 aa2.12□□□□□ -2.07
UBR3-204ENST00000430321 CFAP54Q96N23 3096 aa2.12□□□□□ -2.07
UBR3-204ENST00000430321 MEGF8Q7Z7M0 2845 aa2.12□□□□□ -2.07
UBR3-204ENST00000430321 BSNQ9UPA5 3926 aa2.1□□□□□ -2.07
UBR3-204ENST00000430321 PCNTO95613 3336 aa2.1□□□□□ -2.07
UBR3-204ENST00000430321 KRTAP9-6A0A140TA67 174 aa2.1□□□□□ -2.07
UBR3-204ENST00000430321 KRTAP9-3Q9BYQ3 159 aa2.1□□□□□ -2.07
UBR3-204ENST00000430321 KRTAP4-8Q9BYQ9 185 aa2.09□□□□□ -2.07
UBR3-204ENST00000430321 KRTAP9-8Q9BYQ0 159 aa2.09□□□□□ -2.07
UBR3-204ENST00000430321 PKHD1L1Q86WI1 4243 aa2.09□□□□□ -2.08
UBR3-204ENST00000430321 KRTAP19-6Q3LI70 58 aa2.09□□□□□ -2.08
UBR3-204ENST00000430321 CMYA5Q8N3K9 4069 aa2.08□□□□□ -2.08
UBR3-204ENST00000430321 MT1BP07438 61 aa2.08□□□□□ -2.08
UBR3-204ENST00000430321 MT1XP80297 61 aa2.07□□□□□ -2.08
UBR3-204ENST00000430321 REV3LO60673 3130 aa2.07□□□□□ -2.08
UBR3-204ENST00000430321 KRTAP9-2Q9BYQ4 174 aa2.07□□□□□ -2.08
UBR3-204ENST00000430321 DMXL1Q9Y485 3027 aa2.06□□□□□ -2.08
UBR3-204ENST00000430321 KRTAP19-3Q7Z4W3 81 aa2.06□□□□□ -2.08
UBR3-204ENST00000430321 RYR1P21817 5038 aa2.06□□□□□ -2.08
UBR3-204ENST00000430321 UTRNP46939 3433 aa2.04□□□□□ -2.08
UBR3-204ENST00000430321 RYR2Q92736 4967 aa2.04□□□□□ -2.08
UBR3-204ENST00000430321 KRTAP20-1Q3LI63 56 aa2.04□□□□□ -2.08
UBR3-204ENST00000430321 KMT2CQ8NEZ4 4911 aaKnown RBP2.04□□□□□ -2.08
UBR3-204ENST00000430321 FRAS1Q86XX4 4008 aa2.03□□□□□ -2.08
UBR3-204ENST00000430321 RYR3Q15413 4870 aa2.03□□□□□ -2.08
UBR3-204ENST00000430321 ADGRG4Q8IZF6 3080 aa2.02□□□□□ -2.09
UBR3-204ENST00000430321 KRTAP4-2Q9BYR5 136 aa2.02□□□□□ -2.09
UBR3-204ENST00000430321 LCE4AQ5TA78 99 aa2.02□□□□□ -2.09
UBR3-204ENST00000430321 VPS13BQ7Z7G8 4022 aa2.02□□□□□ -2.09
UBR3-204ENST00000430321 MT1LQ93083 61 aa2.01□□□□□ -2.09
UBR3-204ENST00000430321 GOLGB1Q14789 3259 aaKnown RBP2.01□□□□□ -2.09
UBR3-204ENST00000430321 DNHD1Q96M86 4753 aa2.01□□□□□ -2.09
UBR3-204ENST00000430321 TRIOO75962 3097 aa2.01□□□□□ -2.09
UBR3-204ENST00000430321 LCE3BQ5TA77 95 aa2.01□□□□□ -2.09
UBR3-204ENST00000430321 DNAH7Q8WXX0 4024 aa2.01□□□□□ -2.09
UBR3-204ENST00000430321 PCLOQ9Y6V0 5065 aa2□□□□□ -2.09
UBR3-204ENST00000430321 KRTAP6-3Q3LI67 103 aa2□□□□□ -2.09
UBR3-204ENST00000430321 MT3P25713 68 aa2□□□□□ -2.09
UBR3-204ENST00000430321 USP34Q70CQ2 3546 aa1.99□□□□□ -2.09
UBR3-204ENST00000430321 LCE1AQ5T7P2 110 aa1.99□□□□□ -2.09
UBR3-204ENST00000430321 KRTAP9-9Q9BYP9 154 aa1.99□□□□□ -2.09
UBR3-204ENST00000430321 KRTAP9-4Q9BYQ2 154 aa1.99□□□□□ -2.09
UBR3-204ENST00000430321 MUC17Q685J3 4493 aa1.99□□□□□ -2.09
UBR3-204ENST00000430321 KRTAP5-3Q6L8H2 238 aa1.99□□□□□ -2.09
UBR3-204ENST00000430321 PRKDCP78527 4128 aaKnown RBP1.98□□□□□ -2.09
UBR3-204ENST00000430321 KRTAP2-3P0C7H8 128 aa1.98□□□□□ -2.09
UBR3-204ENST00000430321 KRTAP2-4Q9BYR9 128 aa1.98□□□□□ -2.09
UBR3-204ENST00000430321 MT1EP04732 61 aa1.97□□□□□ -2.09
UBR3-204ENST00000430321 KRTAP4-12Q9BQ66 201 aa1.97□□□□□ -2.09
UBR3-204ENST00000430321 MKI67P46013 3256 aaKnown RBP1.97□□□□□ -2.09
UBR3-204ENST00000430321 LCE3DQ9BYE3 92 aa1.96□□□□□ -2.1
UBR3-204ENST00000430321 HERC2O95714 4834 aa1.96□□□□□ -2.1
UBR3-204ENST00000430321 LAMA3Q16787 3333 aa1.96□□□□□ -2.1
UBR3-204ENST00000430321 AKAP9Q99996 3911 aa1.96□□□□□ -2.1
UBR3-204ENST00000430321 TRRAPQ9Y4A5 3859 aa1.96□□□□□ -2.1
UBR3-204ENST00000430321 NBPF19A0A087WUL8 3843 aa1.95□□□□□ -2.1
UBR3-204ENST00000430321 VPS13AQ96RL7 3174 aa1.95□□□□□ -2.1
UBR3-204ENST00000430321 LCE3EQ5T5B0 92 aa1.95□□□□□ -2.1
UBR3-204ENST00000430321 KRTAP9-7A8MTY7 169 aa1.95□□□□□ -2.1
UBR3-204ENST00000430321 ZFHX3Q15911 3703 aa1.94□□□□□ -2.1
UBR3-204ENST00000430321 FREM2Q5SZK8 3169 aa1.94□□□□□ -2.1
UBR3-204ENST00000430321 ANK2Q01484 3957 aa1.94□□□□□ -2.1
UBR3-204ENST00000430321 KRTAP4-8A0A0G2JLE6 195 aa1.93□□□□□ -2.1
UBR3-204ENST00000430321 LAMA2P24043 3122 aaKnown RBP1.93□□□□□ -2.1
UBR3-204ENST00000430321 SPENQ96T58 3664 aaKnown RBP1.93□□□□□ -2.1
UBR3-204ENST00000430321 BRCA2P51587 3418 aa1.93□□□□□ -2.1
UBR3-204ENST00000430321 SPTBN5Q9NRC6 3674 aaKnown RBP1.92□□□□□ -2.1
UBR3-204ENST00000430321 MT1MQ8N339 61 aa1.92□□□□□ -2.1
UBR3-204ENST00000430321 PKD1P98161 4303 aa1.91□□□□□ -2.1
UBR3-204ENST00000430321 SRRM2Q9UQ35 2752 aaKnown RBP1.91□□□□□ -2.1
UBR3-204ENST00000430321 KRTAP4-7Q9BYR0 210 aa1.9□□□□□ -2.11
UBR3-204ENST00000430321 BOD1L1Q8NFC6 3051 aa1.9□□□□□ -2.11
UBR3-204ENST00000430321 COL6A3P12111 3177 aa1.9□□□□□ -2.11
UBR3-204ENST00000430321 CUBNO60494 3623 aa1.89□□□□□ -2.11
UBR3-204ENST00000430321 KRTAP5-2Q701N4 177 aa1.89□□□□□ -2.11
UBR3-204ENST00000430321 STARD9Q9P2P6 4700 aa1.88□□□□□ -2.11
UBR3-204ENST00000430321 KRTAP2-2Q9BYT5 123 aa1.87□□□□□ -2.11
UBR3-204ENST00000430321 KRTAP2-1Q9BYU5 128 aa1.87□□□□□ -2.11
UBR3-204ENST00000430321 KRTAP19-2Q3LHN2 52 aa1.87□□□□□ -2.11
UBR3-204ENST00000430321 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.87□□□□□ -2.11
UBR3-204ENST00000430321 SPRR5A0A1B0GTR4 108 aa1.87□□□□□ -2.11
UBR3-204ENST00000430321 WDFY3Q8IZQ1 3526 aa1.87□□□□□ -2.11
UBR3-204ENST00000430321 COL7A1Q02388 2944 aa1.85□□□□□ -2.11
UBR3-204ENST00000430321 MT1AP04731 61 aa1.85□□□□□ -2.11
UBR3-204ENST00000430321 MT4P47944 62 aa1.85□□□□□ -2.11
UBR3-204ENST00000430321 HECTD4Q9Y4D8 3996 aa1.83□□□□□ -2.12
UBR3-204ENST00000430321 SZT2Q5T011 3432 aa1.83□□□□□ -2.12
UBR3-204ENST00000430321 CFAP47Q6ZTR5 3102 aa1.8□□□□□ -2.12
UBR3-204ENST00000430321 XIRP2A4UGR9 3374 aa1.8□□□□□ -2.12
UBR3-204ENST00000430321 CDH23Q9H251 3354 aa1.79□□□□□ -2.12
UBR3-204ENST00000430321 MYO15AQ9UKN7 3530 aa1.79□□□□□ -2.12
UBR3-204ENST00000430321 TNXBP22105 4242 aa1.78□□□□□ -2.12
UBR3-204ENST00000430321 ZFHX4Q86UP3 3567 aa1.78□□□□□ -2.12
UBR3-204ENST00000430321 KMT2AQ03164 3969 aa1.78□□□□□ -2.12
UBR3-204ENST00000430321 DMDP11532 3685 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms