RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 RANBP2P49792 3224 aaKnown RBP0.55□□□□□ -2.32
SF3B1-205ENST00000424674 RYR2Q92736 4967 aa0.55□□□□□ -2.32
SF3B1-205ENST00000424674 ANKRD11Q6UB99 2663 aaPredicted RBP0.55□□□□□ -2.32
SF3B1-205ENST00000424674 TACC2O95359 2948 aa0.54□□□□□ -2.32
SF3B1-205ENST00000424674 USP9YO00507 2555 aaPredicted RBP0.54□□□□□ -2.32
SF3B1-205ENST00000424674 GCN1Q92616 2671 aaKnown RBP0.54□□□□□ -2.32
SF3B1-205ENST00000424674 ACACAQ13085 2346 aa0.54□□□□□ -2.32
SF3B1-205ENST00000424674 KMT2CQ8NEZ4 4911 aaKnown RBP0.54□□□□□ -2.32
SF3B1-205ENST00000424674 COL7A1Q02388 2944 aa0.54□□□□□ -2.32
SF3B1-205ENST00000424674 MYO9AB2RTY4 2548 aa0.54□□□□□ -2.32
SF3B1-205ENST00000424674 KALRNO60229 2985 aa0.54□□□□□ -2.32
SF3B1-205ENST00000424674 RELNP78509 3460 aa0.54□□□□□ -2.32
SF3B1-205ENST00000424674 FLNAP21333 2647 aaKnown RBP0.53□□□□□ -2.32
SF3B1-205ENST00000424674 MTORP42345 2549 aa0.53□□□□□ -2.32
SF3B1-205ENST00000424674 LRRK2Q5S007 2527 aa0.53□□□□□ -2.32
SF3B1-205ENST00000424674 SMR3BP02814 79 aaPredicted RBP0.53□□□□□ -2.32
SF3B1-205ENST00000424674 NBEAL2Q6ZNJ1 2754 aa0.53□□□□□ -2.32
SF3B1-205ENST00000424674 MUC5BQ9HC84 5762 aaPredicted RBP0.53□□□□□ -2.32
SF3B1-205ENST00000424674 HECTD4Q9Y4D8 3996 aa0.53□□□□□ -2.33
SF3B1-205ENST00000424674 RYR1P21817 5038 aa0.53□□□□□ -2.33
SF3B1-205ENST00000424674 TENM3Q9P273 2699 aa0.52□□□□□ -2.33
SF3B1-205ENST00000424674 CUBNO60494 3623 aa0.52□□□□□ -2.33
SF3B1-205ENST00000424674 DCHS2Q6V1P9 2916 aa0.52□□□□□ -2.33
SF3B1-205ENST00000424674 RYR3Q15413 4870 aa0.52□□□□□ -2.33
SF3B1-205ENST00000424674 SPRR2EP22531 72 aa0.52□□□□□ -2.33
SF3B1-205ENST00000424674 SONP18583 2426 aaKnown RBP0.52□□□□□ -2.33
SF3B1-205ENST00000424674 ZFYVE26Q68DK2 2539 aa0.52□□□□□ -2.33
SF3B1-205ENST00000424674 HRNRQ86YZ3 2850 aaPredicted RBP0.51□□□□□ -2.33
SF3B1-205ENST00000424674 DMXL1Q9Y485 3027 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 COL12A1Q99715 3063 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 DNAH8Q96JB1 4490 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 EPPK1P58107 5090 aaKnown RBP0.51□□□□□ -2.33
SF3B1-205ENST00000424674 HYDINQ4G0P3 5121 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 A0A096LNI7 61 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 CFAP54Q96N23 3096 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 ZANQ9Y493 2812 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 LRP1BQ9NZR2 4599 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 LAMA5O15230 3695 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 FRYLO94915 3013 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 HIVEP1P15822 2718 aa0.51□□□□□ -2.33
SF3B1-205ENST00000424674 BOD1L1Q8NFC6 3051 aa0.5□□□□□ -2.33
SF3B1-205ENST00000424674 KRTAP19-5Q3LI72 72 aa0.5□□□□□ -2.33
SF3B1-205ENST00000424674 CSMD1Q96PZ7 3565 aa0.5□□□□□ -2.33
SF3B1-205ENST00000424674 MKI67P46013 3256 aaKnown RBP0.5□□□□□ -2.33
SF3B1-205ENST00000424674 LRBAP50851 2863 aa0.49□□□□□ -2.33
SF3B1-205ENST00000424674 ITPR1Q14643 2758 aa0.49□□□□□ -2.33
SF3B1-205ENST00000424674 AKAP9Q99996 3911 aa0.49□□□□□ -2.33
SF3B1-205ENST00000424674 DEFB124Q8NES8 71 aa0.49□□□□□ -2.33
SF3B1-205ENST00000424674 SPRR2FQ96RM1 72 aa0.49□□□□□ -2.33
SF3B1-205ENST00000424674 LAMA2P24043 3122 aaKnown RBP0.49□□□□□ -2.33
SF3B1-205ENST00000424674 ACACBO00763 2458 aa0.49□□□□□ -2.33
SF3B1-205ENST00000424674 SZT2Q5T011 3432 aa0.49□□□□□ -2.33
SF3B1-205ENST00000424674 UTP20O75691 2785 aaKnown RBP0.49□□□□□ -2.33
SF3B1-205ENST00000424674 NBEAQ8NFP9 2946 aa0.48□□□□□ -2.33
SF3B1-205ENST00000424674 EYSQ5T1H1 3165 aa0.48□□□□□ -2.33
SF3B1-205ENST00000424674 FLGP20930 4061 aaPredicted RBP0.48□□□□□ -2.33
SF3B1-205ENST00000424674 HTTP42858 3142 aa0.48□□□□□ -2.33
SF3B1-205ENST00000424674 IGSF10Q6WRI0 2623 aa0.48□□□□□ -2.33
SF3B1-205ENST00000424674 DMXL2Q8TDJ6 3036 aa0.48□□□□□ -2.33
SF3B1-205ENST00000424674 DEFB136Q30KP8 78 aa0.48□□□□□ -2.33
SF3B1-205ENST00000424674 APOBP04114 4563 aaKnown RBP0.48□□□□□ -2.33
SF3B1-205ENST00000424674 RIF1Q5UIP0 2472 aaKnown RBP0.48□□□□□ -2.33
SF3B1-205ENST00000424674 HERC1Q15751 4861 aa0.48□□□□□ -2.33
SF3B1-205ENST00000424674 NIPBLQ6KC79 2804 aaeCLIP0.48□□□□□ -2.33
SF3B1-205ENST00000424674 FAM186AA6NE01 2351 aa0.48□□□□□ -2.33
SF3B1-205ENST00000424674 ABCA13Q86UQ4 5058 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 CFAP47Q6ZTR5 3102 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 ATMQ13315 3056 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 PRUNE2Q8WUY3 3088 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 DNAH7Q8WXX0 4024 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 BIRC6Q9NR09 4857 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 DNAH6Q9C0G6 4158 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 DNAH9Q9NYC9 4486 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 TRIOO75962 3097 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 LAMA3Q16787 3333 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 EP400Q96L91 3159 aa0.47□□□□□ -2.33
SF3B1-205ENST00000424674 DNAH12Q6ZR08 3092 aa0.46□□□□□ -2.34
SF3B1-205ENST00000424674 SMG1Q96Q15 3661 aaKnown RBP0.46□□□□□ -2.34
SF3B1-205ENST00000424674 FAT4Q6V0I7 4981 aa0.46□□□□□ -2.34
SF3B1-205ENST00000424674 STAB2Q8WWQ8 2551 aa0.46□□□□□ -2.34
SF3B1-205ENST00000424674 KMT2DO14686 5537 aa0.46□□□□□ -2.34
SF3B1-205ENST00000424674 CEP250Q9BV73 2442 aa0.46□□□□□ -2.34
SF3B1-205ENST00000424674 FAT3Q8TDW7 4589 aa0.46□□□□□ -2.34
SF3B1-205ENST00000424674 WDR87Q6ZQQ6 2873 aa0.46□□□□□ -2.34
SF3B1-205ENST00000424674 MUC5ACP98088 5654 aa0.45□□□□□ -2.34
SF3B1-205ENST00000424674 SSPOA2VEC9 5147 aa0.45□□□□□ -2.34
SF3B1-205ENST00000424674 DEFB1P60022 68 aa0.45□□□□□ -2.34
SF3B1-205ENST00000424674 MUC3AQ02505 3323 aa0.45□□□□□ -2.34
SF3B1-205ENST00000424674 RNF213Q63HN8 5207 aa0.45□□□□□ -2.34
SF3B1-205ENST00000424674 TGP01266 2768 aa0.45□□□□□ -2.34
SF3B1-205ENST00000424674 TLN2Q9Y4G6 2542 aa0.44□□□□□ -2.34
SF3B1-205ENST00000424674 MXRA5Q9NR99 2828 aa0.44□□□□□ -2.34
SF3B1-205ENST00000424674 FAT1Q14517 4588 aa0.44□□□□□ -2.34
SF3B1-205ENST00000424674 CFAP46Q8IYW2 2715 aa0.44□□□□□ -2.34
SF3B1-205ENST00000424674 SPTBN5Q9NRC6 3674 aaKnown RBP0.44□□□□□ -2.34
SF3B1-205ENST00000424674 C5orf42Q9H799 3197 aa0.43□□□□□ -2.34
SF3B1-205ENST00000424674 MDN1Q9NU22 5596 aa0.43□□□□□ -2.34
SF3B1-205ENST00000424674 SPEGQ15772 3267 aa0.43□□□□□ -2.34
SF3B1-205ENST00000424674 USP34Q70CQ2 3546 aa0.43□□□□□ -2.34
SF3B1-205ENST00000424674 DNAH1Q9P2D7 4330 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms