RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 KRTAP10-8P60410 259 aa6.3□□□□□ -1.4
PTPRN-204ENST00000423636 RPS29P62273 56 aaKnown RBP6.27□□□□□ -1.41
PTPRN-204ENST00000423636 A6NN06 94 aa6.27□□□□□ -1.41
PTPRN-204ENST00000423636 XP32Q5T750 250 aa6.24□□□□□ -1.41
PTPRN-204ENST00000423636 MT1HL1P0DM35 61 aa6.23□□□□□ -1.41
PTPRN-204ENST00000423636 SPATA8Q6RVD6 105 aa6.23□□□□□ -1.41
PTPRN-204ENST00000423636 MIR22HGQ0VDD5 57 aa6.22□□□□□ -1.41
PTPRN-204ENST00000423636 HERC2O95714 4834 aa6.2□□□□□ -1.42
PTPRN-204ENST00000423636 UQCR11O14957 56 aa6.18□□□□□ -1.42
PTPRN-204ENST00000423636 CRIPTQ9P021 101 aa6.17□□□□□ -1.42
PTPRN-204ENST00000423636 H3BS24 57 aa6.17□□□□□ -1.42
PTPRN-204ENST00000423636 CSAG1Q6PB30 78 aa6.15□□□□□ -1.42
PTPRN-204ENST00000423636 COX6B2Q6YFQ2 88 aa6.15□□□□□ -1.43
PTPRN-204ENST00000423636 RPL37P61927 97 aaKnown RBP6.14□□□□□ -1.43
PTPRN-204ENST00000423636 HERC1Q15751 4861 aa6.13□□□□□ -1.43
PTPRN-204ENST00000423636 A0A0D9SG42 100 aa6.13□□□□□ -1.43
PTPRN-204ENST00000423636 H0YAA0 97 aa6.11□□□□□ -1.43
PTPRN-204ENST00000423636 LINC01554Q52M75 96 aa6.11□□□□□ -1.43
PTPRN-204ENST00000423636 A0A1B0GU33 70 aa6.08□□□□□ -1.44
PTPRN-204ENST00000423636 KRTAP3-3Q9BYR6 98 aa6.05□□□□□ -1.44
PTPRN-204ENST00000423636 PCLOQ9Y6V0 5065 aa6.04□□□□□ -1.44
PTPRN-204ENST00000423636 J3QL48 77 aa6.03□□□□□ -1.44
PTPRN-204ENST00000423636 P0C880 135 aa6.02□□□□□ -1.45
PTPRN-204ENST00000423636 S4R3F8 94 aa6.02□□□□□ -1.45
PTPRN-204ENST00000423636 H1FX-AS1Q4G0G2 97 aa6.01□□□□□ -1.45
PTPRN-204ENST00000423636 KRTAP13-4Q3LI77 160 aa6□□□□□ -1.45
PTPRN-204ENST00000423636 RNF213Q63HN8 5207 aa5.99□□□□□ -1.45
PTPRN-204ENST00000423636 FAT4Q6V0I7 4981 aa5.96□□□□□ -1.46
PTPRN-204ENST00000423636 KRTAP10-6P60371 365 aaPredicted RBP5.94□□□□□ -1.46
PTPRN-204ENST00000423636 KRTAP4-1Q9BYQ7 146 aa5.92□□□□□ -1.46
PTPRN-204ENST00000423636 K7ERS5 55 aa5.91□□□□□ -1.46
PTPRN-204ENST00000423636 KRTAP3-2Q9BYR7 98 aa5.91□□□□□ -1.46
PTPRN-204ENST00000423636 TPRXLQ17RH7 258 aa5.88□□□□□ -1.47
PTPRN-204ENST00000423636 SPINT4Q6UDR6 99 aa5.87□□□□□ -1.47
PTPRN-204ENST00000423636 BIRC6Q9NR09 4857 aa5.86□□□□□ -1.47
PTPRN-204ENST00000423636 MUC17Q685J3 4493 aa5.85□□□□□ -1.47
PTPRN-204ENST00000423636 UBR4Q5T4S7 5183 aa5.84□□□□□ -1.47
PTPRN-204ENST00000423636 LORP23490 312 aaPredicted RBP5.78□□□□□ -1.48
PTPRN-204ENST00000423636 KRTAP12-2P59991 146 aa5.77□□□□□ -1.49
PTPRN-204ENST00000423636 C10orf95Q9H7T3 257 aa5.77□□□□□ -1.49
PTPRN-204ENST00000423636 KRTAP25-1Q3LHN0 102 aa5.74□□□□□ -1.49
PTPRN-204ENST00000423636 SEC61BP60468 96 aaKnown RBP5.73□□□□□ -1.49
PTPRN-204ENST00000423636 M0QZ58 72 aa5.72□□□□□ -1.49
PTPRN-204ENST00000423636 HMCN2Q8NDA2 5059 aa5.71□□□□□ -1.5
PTPRN-204ENST00000423636 ROMO1P60602 79 aa5.69□□□□□ -1.5
PTPRN-204ENST00000423636 R4GN34 69 aa5.66□□□□□ -1.5
PTPRN-204ENST00000423636 KRTAP12-1P59990 96 aa5.64□□□□□ -1.51
PTPRN-204ENST00000423636 NDUFAF8A1L188 74 aa5.56□□□□□ -1.52
PTPRN-204ENST00000423636 KRTAP19-2Q3LHN2 52 aa5.54□□□□□ -1.52
PTPRN-204ENST00000423636 FLGP20930 4061 aaPredicted RBP5.53□□□□□ -1.52
PTPRN-204ENST00000423636 M0R2T5 61 aa5.49□□□□□ -1.53
PTPRN-204ENST00000423636 CAMK2N1Q7Z7J9 78 aa5.41□□□□□ -1.54
PTPRN-204ENST00000423636 LCE2CQ5TA81 110 aa5.35□□□□□ -1.55
PTPRN-204ENST00000423636 A0A0A0MQY5 61 aa5.34□□□□□ -1.55
PTPRN-204ENST00000423636 USH2AO75445 5202 aa5.33□□□□□ -1.56
PTPRN-204ENST00000423636 KRTAP10-10P60014 251 aa5.25□□□□□ -1.57
PTPRN-204ENST00000423636 MT1HP80294 61 aa5.25□□□□□ -1.57
PTPRN-204ENST00000423636 FSIP2Q5CZC0 6907 aa5.22□□□□□ -1.57
PTPRN-204ENST00000423636 MT1FP04733 61 aa5.18□□□□□ -1.58
PTPRN-204ENST00000423636 KRTAP15-1Q3LI76 137 aa5.17□□□□□ -1.58
PTPRN-204ENST00000423636 KRTAP19-1Q8IUB9 90 aa5.14□□□□□ -1.59
PTPRN-204ENST00000423636 KMT2DO14686 5537 aa5.14□□□□□ -1.59
PTPRN-204ENST00000423636 MT2AP02795 61 aa5.13□□□□□ -1.59
PTPRN-204ENST00000423636 LUZP6Q538Z0 58 aa5.12□□□□□ -1.59
PTPRN-204ENST00000423636 PLAC4Q8WY50 150 aa5.09□□□□□ -1.59
PTPRN-204ENST00000423636 KRTAP9-8Q9BYQ0 159 aa5.08□□□□□ -1.6
PTPRN-204ENST00000423636 TNP1P09430 55 aa5.02□□□□□ -1.61
PTPRN-204ENST00000423636 SPRR2GQ9BYE4 73 aa5□□□□□ -1.61
PTPRN-204ENST00000423636 LCE3AQ5TA76 89 aa4.92□□□□□ -1.62
PTPRN-204ENST00000423636 MT1BP07438 61 aa4.89□□□□□ -1.63
PTPRN-204ENST00000423636 KRTAP9-3Q9BYQ3 159 aa4.84□□□□□ -1.64
PTPRN-204ENST00000423636 MT1XP80297 61 aa4.83□□□□□ -1.64
PTPRN-204ENST00000423636 KRTAP10-5P60370 271 aa4.82□□□□□ -1.64
PTPRN-204ENST00000423636 KRTAP10-7P60409 375 aaPredicted RBP4.82□□□□□ -1.64
PTPRN-204ENST00000423636 PP632Q6XCG6 107 aa4.8□□□□□ -1.64
PTPRN-204ENST00000423636 LCE2BO14633 110 aa4.8□□□□□ -1.64
PTPRN-204ENST00000423636 KRTAP19-8Q3LI54 63 aa4.75□□□□□ -1.65
PTPRN-204ENST00000423636 KRTAP4-8A0A0G2JLE6 195 aa4.7□□□□□ -1.66
PTPRN-204ENST00000423636 KRTAP4-8Q9BYQ9 185 aa4.7□□□□□ -1.66
PTPRN-204ENST00000423636 KRTAP10-12P60413 245 aa4.69□□□□□ -1.66
PTPRN-204ENST00000423636 SSPOA2VEC9 5147 aa4.68□□□□□ -1.66
PTPRN-204ENST00000423636 LCE2AQ5TA79 106 aaPredicted RBP4.65□□□□□ -1.67
PTPRN-204ENST00000423636 KRTAP12-3P60328 96 aa4.61□□□□□ -1.67
PTPRN-204ENST00000423636 MUC12Q9UKN1 5478 aa4.56□□□□□ -1.68
PTPRN-204ENST00000423636 DSTQ03001 7570 aaKnown RBP4.56□□□□□ -1.68
PTPRN-204ENST00000423636 KRTAP19-5Q3LI72 72 aa4.55□□□□□ -1.68
PTPRN-204ENST00000423636 PRO2289Q9P1D8 64 aa4.55□□□□□ -1.68
PTPRN-204ENST00000423636 KRTAP8-1Q8IUC2 63 aa4.53□□□□□ -1.68
PTPRN-204ENST00000423636 FCGBPQ9Y6R7 5405 aaPredicted RBP4.51□□□□□ -1.69
PTPRN-204ENST00000423636 KRTAP23-1A1A580 65 aa4.5□□□□□ -1.69
PTPRN-204ENST00000423636 KRTAP4-7Q9BYR0 210 aa4.49□□□□□ -1.69
PTPRN-204ENST00000423636 SPRR5A0A1B0GTR4 108 aa4.42□□□□□ -1.7
PTPRN-204ENST00000423636 SYNE2Q8WXH0 6885 aaKnown RBP4.32□□□□□ -1.72
PTPRN-204ENST00000423636 MACF1Q9UPN3 7388 aaKnown RBP4.3□□□□□ -1.72
PTPRN-204ENST00000423636 KRTAP19-7Q3SYF9 63 aa4.29□□□□□ -1.72
PTPRN-204ENST00000423636 LCE3CQ5T5A8 94 aa4.27□□□□□ -1.73
PTPRN-204ENST00000423636 KRTAP9-6A8MVA2 160 aa4.27□□□□□ -1.73
PTPRN-204ENST00000423636 KRTAP4-3Q9BYR4 195 aa4.25□□□□□ -1.73
PTPRN-204ENST00000423636 CRCT1Q9UGL9 99 aa4.24□□□□□ -1.73
PTPRN-204ENST00000423636 SYNE1Q8NF91 8797 aaKnown RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms