RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 H1FX-AS1Q4G0G2 97 aa10.56□□□□□ -0.72
TPM1-208ENST00000404484 SPTSSBQ8NFR3 76 aa10.56□□□□□ -0.72
TPM1-208ENST00000404484 KRTAP19-2Q3LHN2 52 aa10.53□□□□□ -0.72
TPM1-208ENST00000404484 LCE2CQ5TA81 110 aa10.52□□□□□ -0.73
TPM1-208ENST00000404484 V9GYY9 64 aa10.49□□□□□ -0.73
TPM1-208ENST00000404484 S4R3F8 94 aa10.48□□□□□ -0.73
TPM1-208ENST00000404484 Q1T7F1 81 aa10.46□□□□□ -0.74
TPM1-208ENST00000404484 LCA10Q71F78 164 aa10.4□□□□□ -0.74
TPM1-208ENST00000404484 LINC01558Q9Y6Z2 57 aa10.37□□□□□ -0.75
TPM1-208ENST00000404484 MT1HP80294 61 aa10.35□□□□□ -0.75
TPM1-208ENST00000404484 KRTAP3-3Q9BYR6 98 aa10.33□□□□□ -0.76
TPM1-208ENST00000404484 PRR15LQ9BU68 103 aa10.27□□□□□ -0.76
TPM1-208ENST00000404484 CSAG1Q6PB30 78 aa10.26□□□□□ -0.77
TPM1-208ENST00000404484 FLGP20930 4061 aaPredicted RBP10.26□□□□□ -0.77
TPM1-208ENST00000404484 SEC61GP60059 68 aa10.25□□□□□ -0.77
TPM1-208ENST00000404484 A0A1B0GU69 56 aa10.24□□□□□ -0.77
TPM1-208ENST00000404484 PSPHP1O15172 72 aa10.22□□□□□ -0.77
TPM1-208ENST00000404484 KRTAP9-2Q9BYQ4 174 aa10.2□□□□□ -0.78
TPM1-208ENST00000404484 M0R2T5 61 aa10.15□□□□□ -0.78
TPM1-208ENST00000404484 Q5VV11 94 aa10.14□□□□□ -0.79
TPM1-208ENST00000404484 KRTAP10-6P60371 365 aaPredicted RBP10.12□□□□□ -0.79
TPM1-208ENST00000404484 LORP23490 312 aaPredicted RBP10.1□□□□□ -0.79
TPM1-208ENST00000404484 H0YAA0 97 aa10.05□□□□□ -0.8
TPM1-208ENST00000404484 LCE2DQ5TA82 110 aaPredicted RBP10.01□□□□□ -0.81
TPM1-208ENST00000404484 ADM2Q7Z4H4 148 aa9.98□□□□□ -0.81
TPM1-208ENST00000404484 A6NED7 52 aa9.97□□□□□ -0.81
TPM1-208ENST00000404484 KRTAP3-2Q9BYR7 98 aa9.96□□□□□ -0.82
TPM1-208ENST00000404484 UQCR11O14957 56 aa9.94□□□□□ -0.82
TPM1-208ENST00000404484 A0A1B0GU33 70 aa9.93□□□□□ -0.82
TPM1-208ENST00000404484 P0C880 135 aa9.88□□□□□ -0.83
TPM1-208ENST00000404484 KRTAP9-8Q9BYQ0 159 aa9.84□□□□□ -0.83
TPM1-208ENST00000404484 BRK1Q8WUW1 75 aa9.82□□□□□ -0.84
TPM1-208ENST00000404484 FSIP2Q5CZC0 6907 aa9.81□□□□□ -0.84
TPM1-208ENST00000404484 MIR22HGQ0VDD5 57 aa9.8□□□□□ -0.84
TPM1-208ENST00000404484 CDC42SE1Q9NRR8 79 aa9.79□□□□□ -0.84
TPM1-208ENST00000404484 SPATA8Q6RVD6 105 aa9.77□□□□□ -0.85
TPM1-208ENST00000404484 KRTAP9-6A0A140TA67 174 aa9.76□□□□□ -0.85
TPM1-208ENST00000404484 M0QZ58 72 aa9.73□□□□□ -0.85
TPM1-208ENST00000404484 MT2AP02795 61 aa9.71□□□□□ -0.86
TPM1-208ENST00000404484 CRCT1Q9UGL9 99 aa9.67□□□□□ -0.86
TPM1-208ENST00000404484 R4GN34 69 aa9.67□□□□□ -0.86
TPM1-208ENST00000404484 CRIPTQ9P021 101 aa9.65□□□□□ -0.86
TPM1-208ENST00000404484 MT1FP04733 61 aa9.64□□□□□ -0.87
TPM1-208ENST00000404484 KRTAP13-4Q3LI77 160 aa9.64□□□□□ -0.87
TPM1-208ENST00000404484 PRO0628Q9UI54 55 aa9.6□□□□□ -0.87
TPM1-208ENST00000404484 A8MU10 97 aa9.59□□□□□ -0.87
TPM1-208ENST00000404484 KRTAP10-10P60014 251 aa9.59□□□□□ -0.87
TPM1-208ENST00000404484 KRTAP9-3Q9BYQ3 159 aa9.53□□□□□ -0.88
TPM1-208ENST00000404484 A0A0D9SG42 100 aa9.51□□□□□ -0.89
TPM1-208ENST00000404484 USH2AO75445 5202 aa9.5□□□□□ -0.89
TPM1-208ENST00000404484 K7ERS5 55 aa9.46□□□□□ -0.9
TPM1-208ENST00000404484 LCE2BO14633 110 aa9.45□□□□□ -0.9
TPM1-208ENST00000404484 LINC01554Q52M75 96 aa9.44□□□□□ -0.9
TPM1-208ENST00000404484 SPRR2GQ9BYE4 73 aa9.38□□□□□ -0.91
TPM1-208ENST00000404484 SSPOA2VEC9 5147 aa9.38□□□□□ -0.91
TPM1-208ENST00000404484 A6NN06 94 aa9.34□□□□□ -0.91
TPM1-208ENST00000404484 KRTAP12-1P59990 96 aa9.33□□□□□ -0.92
TPM1-208ENST00000404484 SPINT4Q6UDR6 99 aa9.31□□□□□ -0.92
TPM1-208ENST00000404484 KRTAP19-1Q8IUB9 90 aa9.3□□□□□ -0.92
TPM1-208ENST00000404484 PMAIP1Q13794 54 aa9.29□□□□□ -0.92
TPM1-208ENST00000404484 KRTAP12-2P59991 146 aa9.28□□□□□ -0.92
TPM1-208ENST00000404484 FCGBPQ9Y6R7 5405 aaPredicted RBP9.15□□□□□ -0.95
TPM1-208ENST00000404484 KRTAP19-8Q3LI54 63 aa9.14□□□□□ -0.95
TPM1-208ENST00000404484 PLAC4Q8WY50 150 aa9.12□□□□□ -0.95
TPM1-208ENST00000404484 CAMK2N1Q7Z7J9 78 aa9.06□□□□□ -0.96
TPM1-208ENST00000404484 KRTAP19-6Q3LI70 58 aa9.05□□□□□ -0.96
TPM1-208ENST00000404484 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.99□□□□□ -0.97
TPM1-208ENST00000404484 ROMO1P60602 79 aa8.99□□□□□ -0.97
TPM1-208ENST00000404484 MT1BP07438 61 aa8.97□□□□□ -0.97
TPM1-208ENST00000404484 KTN1-AS1Q86SY8 53 aa8.9□□□□□ -0.98
TPM1-208ENST00000404484 MACF1Q9UPN3 7388 aaKnown RBP8.82□□□□□ -1
TPM1-208ENST00000404484 KRTAP9-7A8MTY7 169 aa8.81□□□□□ -1
TPM1-208ENST00000404484 C10orf95Q9H7T3 257 aa8.81□□□□□ -1
TPM1-208ENST00000404484 PRO2289Q9P1D8 64 aa8.71□□□□□ -1.02
TPM1-208ENST00000404484 SYNE2Q8WXH0 6885 aaKnown RBP8.71□□□□□ -1.02
TPM1-208ENST00000404484 MT1XP80297 61 aa8.68□□□□□ -1.02
TPM1-208ENST00000404484 KRTAP25-1Q3LHN0 102 aa8.66□□□□□ -1.02
TPM1-208ENST00000404484 KRTAP10-5P60370 271 aa8.65□□□□□ -1.02
TPM1-208ENST00000404484 SVIPQ8NHG7 77 aa8.65□□□□□ -1.02
TPM1-208ENST00000404484 TNP1P09430 55 aa8.63□□□□□ -1.03
TPM1-208ENST00000404484 PRAC1Q96KF2 57 aa8.63□□□□□ -1.03
TPM1-208ENST00000404484 KRTAP6-3Q3LI67 103 aa8.47□□□□□ -1.05
TPM1-208ENST00000404484 PP632Q6XCG6 107 aa8.39□□□□□ -1.07
TPM1-208ENST00000404484 KRTAP23-1A1A580 65 aa8.39□□□□□ -1.07
TPM1-208ENST00000404484 KRTAP10-7P60409 375 aaPredicted RBP8.31□□□□□ -1.08
TPM1-208ENST00000404484 KRTAP10-12P60413 245 aa8.28□□□□□ -1.08
TPM1-208ENST00000404484 KMT2DO14686 5537 aa8.22□□□□□ -1.09
TPM1-208ENST00000404484 MUC12Q9UKN1 5478 aa8.22□□□□□ -1.09
TPM1-208ENST00000404484 LCE3AQ5TA76 89 aa8.19□□□□□ -1.1
TPM1-208ENST00000404484 KRTAP5-9P26371 169 aa8.17□□□□□ -1.1
TPM1-208ENST00000404484 NEBP20929 6669 aa8.12□□□□□ -1.11
TPM1-208ENST00000404484 KRTAP8-1Q8IUC2 63 aa8.06□□□□□ -1.12
TPM1-208ENST00000404484 MDN1Q9NU22 5596 aa8.02□□□□□ -1.13
TPM1-208ENST00000404484 KRTAP4-8A0A0G2JLE6 195 aa8□□□□□ -1.13
TPM1-208ENST00000404484 KRTAP4-8Q9BYQ9 185 aa8□□□□□ -1.13
TPM1-208ENST00000404484 SPRR2FQ96RM1 72 aa7.97□□□□□ -1.13
TPM1-208ENST00000404484 KRTAP12-3P60328 96 aa7.9□□□□□ -1.14
TPM1-208ENST00000404484 KRTAP19-5Q3LI72 72 aa7.83□□□□□ -1.16
TPM1-208ENST00000404484 SPRR2EP22531 72 aa7.8□□□□□ -1.16
TPM1-208ENST00000404484 SPRR2BP35325 72 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms