RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 RPS29P62273 56 aaKnown RBP6.37□□□□□ -1.39
SKA3-203ENST00000400018 Q5W150 140 aa6.37□□□□□ -1.39
SKA3-203ENST00000400018 RNF213Q63HN8 5207 aa6.37□□□□□ -1.39
SKA3-203ENST00000400018 MRPL34Q9BQ48 92 aaKnown RBP6.35□□□□□ -1.39
SKA3-203ENST00000400018 CSAG1Q6PB30 78 aa6.33□□□□□ -1.4
SKA3-203ENST00000400018 KRTAP13-3Q3SY46 172 aa6.32□□□□□ -1.4
SKA3-203ENST00000400018 XP32Q5T750 250 aa6.31□□□□□ -1.4
SKA3-203ENST00000400018 IGKV2D-30A0A075B6S6 120 aa6.23□□□□□ -1.41
SKA3-203ENST00000400018 IGKV2-30P06310 120 aa6.23□□□□□ -1.41
SKA3-203ENST00000400018 SPATA8Q6RVD6 105 aa6.2□□□□□ -1.42
SKA3-203ENST00000400018 C20orf166-AS1Q96NR2 134 aa6.2□□□□□ -1.42
SKA3-203ENST00000400018 A8MUU9 505 aa6.19□□□□□ -1.42
SKA3-203ENST00000400018 TP53AIP1Q9HCN2 124 aa6.19□□□□□ -1.42
SKA3-203ENST00000400018 A0A1B0GU69 56 aa6.18□□□□□ -1.42
SKA3-203ENST00000400018 TPRXLQ17RH7 258 aa6.18□□□□□ -1.42
SKA3-203ENST00000400018 MIR22HGQ0VDD5 57 aa6.18□□□□□ -1.42
SKA3-203ENST00000400018 FAT4Q6V0I7 4981 aa6.17□□□□□ -1.42
SKA3-203ENST00000400018 KRTAP4-1Q9BYQ7 146 aa6.16□□□□□ -1.42
SKA3-203ENST00000400018 RPL37P61927 97 aaKnown RBP6.16□□□□□ -1.42
SKA3-203ENST00000400018 UQCR11O14957 56 aa6.12□□□□□ -1.43
SKA3-203ENST00000400018 MUC17Q685J3 4493 aa6.12□□□□□ -1.43
SKA3-203ENST00000400018 ACYP2P14621 99 aa6.12□□□□□ -1.43
SKA3-203ENST00000400018 ROMO1P60602 79 aa6.12□□□□□ -1.43
SKA3-203ENST00000400018 DMAC1Q96GE9 116 aa6.03□□□□□ -1.44
SKA3-203ENST00000400018 KRTAP25-1Q3LHN0 102 aa6.02□□□□□ -1.45
SKA3-203ENST00000400018 P0C880 135 aa6□□□□□ -1.45
SKA3-203ENST00000400018 KRTAP3-1Q9BYR8 98 aa5.98□□□□□ -1.45
SKA3-203ENST00000400018 SEC61BP60468 96 aaKnown RBP5.96□□□□□ -1.46
SKA3-203ENST00000400018 CRIPTQ9P021 101 aa5.95□□□□□ -1.46
SKA3-203ENST00000400018 A0A0A0MQY5 61 aa5.87□□□□□ -1.47
SKA3-203ENST00000400018 H0YAA0 97 aa5.84□□□□□ -1.47
SKA3-203ENST00000400018 COX6B2Q6YFQ2 88 aa5.83□□□□□ -1.48
SKA3-203ENST00000400018 KRTAP19-2Q3LHN2 52 aa5.83□□□□□ -1.48
SKA3-203ENST00000400018 FLGP20930 4061 aaPredicted RBP5.82□□□□□ -1.48
SKA3-203ENST00000400018 NDUFAF8A1L188 74 aa5.79□□□□□ -1.48
SKA3-203ENST00000400018 LCE2CQ5TA81 110 aa5.76□□□□□ -1.49
SKA3-203ENST00000400018 SPINT4Q6UDR6 99 aa5.76□□□□□ -1.49
SKA3-203ENST00000400018 KRTAP3-3Q9BYR6 98 aa5.74□□□□□ -1.49
SKA3-203ENST00000400018 H1FX-AS1Q4G0G2 97 aa5.72□□□□□ -1.49
SKA3-203ENST00000400018 S4R3F8 94 aa5.7□□□□□ -1.5
SKA3-203ENST00000400018 A0A1B0GU33 70 aa5.69□□□□□ -1.5
SKA3-203ENST00000400018 M0R2T5 61 aa5.65□□□□□ -1.5
SKA3-203ENST00000400018 MT1HP80294 61 aa5.65□□□□□ -1.51
SKA3-203ENST00000400018 KRTAP15-1Q3LI76 137 aa5.63□□□□□ -1.51
SKA3-203ENST00000400018 K7ERS5 55 aa5.61□□□□□ -1.51
SKA3-203ENST00000400018 C10orf95Q9H7T3 257 aa5.59□□□□□ -1.51
SKA3-203ENST00000400018 LORP23490 312 aaPredicted RBP5.55□□□□□ -1.52
SKA3-203ENST00000400018 KRTAP3-2Q9BYR7 98 aa5.49□□□□□ -1.53
SKA3-203ENST00000400018 FSIP2Q5CZC0 6907 aa5.48□□□□□ -1.53
SKA3-203ENST00000400018 KRTAP10-6P60371 365 aaPredicted RBP5.47□□□□□ -1.53
SKA3-203ENST00000400018 LUZP6Q538Z0 58 aa5.46□□□□□ -1.54
SKA3-203ENST00000400018 USH2AO75445 5202 aa5.46□□□□□ -1.54
SKA3-203ENST00000400018 A0A0D9SG42 100 aa5.45□□□□□ -1.54
SKA3-203ENST00000400018 LCE2AQ5TA79 106 aaPredicted RBP5.44□□□□□ -1.54
SKA3-203ENST00000400018 KRTAP13-4Q3LI77 160 aa5.43□□□□□ -1.54
SKA3-203ENST00000400018 MT1FP04733 61 aa5.42□□□□□ -1.54
SKA3-203ENST00000400018 KRTAP9-8Q9BYQ0 159 aa5.42□□□□□ -1.54
SKA3-203ENST00000400018 MT2AP02795 61 aa5.4□□□□□ -1.55
SKA3-203ENST00000400018 KRTAP10-10P60014 251 aa5.39□□□□□ -1.55
SKA3-203ENST00000400018 M0QZ58 72 aa5.32□□□□□ -1.56
SKA3-203ENST00000400018 R4GN34 69 aa5.29□□□□□ -1.56
SKA3-203ENST00000400018 LCE2DQ5TA82 110 aaPredicted RBP5.26□□□□□ -1.57
SKA3-203ENST00000400018 KRTAP12-2P59991 146 aa5.25□□□□□ -1.57
SKA3-203ENST00000400018 KRTAP19-1Q8IUB9 90 aa5.24□□□□□ -1.57
SKA3-203ENST00000400018 KRTAP9-3Q9BYQ3 159 aa5.2□□□□□ -1.58
SKA3-203ENST00000400018 LCE2BO14633 110 aa5.18□□□□□ -1.58
SKA3-203ENST00000400018 KRTAP12-1P59990 96 aa5.13□□□□□ -1.59
SKA3-203ENST00000400018 PLAC4Q8WY50 150 aa5.12□□□□□ -1.59
SKA3-203ENST00000400018 SSPOA2VEC9 5147 aa5.11□□□□□ -1.59
SKA3-203ENST00000400018 SPRR2GQ9BYE4 73 aa5.1□□□□□ -1.59
SKA3-203ENST00000400018 MT1BP07438 61 aa5.06□□□□□ -1.6
SKA3-203ENST00000400018 KRTAP9-2Q9BYQ4 174 aa5.04□□□□□ -1.6
SKA3-203ENST00000400018 KMT2DO14686 5537 aa5.03□□□□□ -1.6
SKA3-203ENST00000400018 KRTAP19-8Q3LI54 63 aa4.96□□□□□ -1.62
SKA3-203ENST00000400018 KRTAP9-6A0A140TA67 174 aa4.95□□□□□ -1.62
SKA3-203ENST00000400018 CAMK2N1Q7Z7J9 78 aa4.95□□□□□ -1.62
SKA3-203ENST00000400018 MT1XP80297 61 aa4.88□□□□□ -1.63
SKA3-203ENST00000400018 FCGBPQ9Y6R7 5405 aaPredicted RBP4.87□□□□□ -1.63
SKA3-203ENST00000400018 KRTAP10-5P60370 271 aa4.86□□□□□ -1.63
SKA3-203ENST00000400018 CRCT1Q9UGL9 99 aa4.83□□□□□ -1.64
SKA3-203ENST00000400018 KRTAP10-7P60409 375 aaPredicted RBP4.77□□□□□ -1.65
SKA3-203ENST00000400018 MACF1Q9UPN3 7388 aaKnown RBP4.73□□□□□ -1.65
SKA3-203ENST00000400018 KRTAP4-8A0A0G2JLE6 195 aa4.71□□□□□ -1.66
SKA3-203ENST00000400018 KRTAP4-8Q9BYQ9 185 aa4.71□□□□□ -1.66
SKA3-203ENST00000400018 SYNE2Q8WXH0 6885 aaKnown RBP4.71□□□□□ -1.66
SKA3-203ENST00000400018 PRO2289Q9P1D8 64 aa4.7□□□□□ -1.66
SKA3-203ENST00000400018 KRTAP19-6Q3LI70 58 aa4.68□□□□□ -1.66
SKA3-203ENST00000400018 PP632Q6XCG6 107 aa4.68□□□□□ -1.66
SKA3-203ENST00000400018 MUC12Q9UKN1 5478 aa4.61□□□□□ -1.67
SKA3-203ENST00000400018 SPRR5A0A1B0GTR4 108 aa4.6□□□□□ -1.67
SKA3-203ENST00000400018 TNP1P09430 55 aa4.59□□□□□ -1.67
SKA3-203ENST00000400018 LCE3AQ5TA76 89 aa4.59□□□□□ -1.67
SKA3-203ENST00000400018 KRTAP10-12P60413 245 aa4.54□□□□□ -1.68
SKA3-203ENST00000400018 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.49□□□□□ -1.69
SKA3-203ENST00000400018 INE1O15225 51 aa4.46□□□□□ -1.69
SKA3-203ENST00000400018 MDN1Q9NU22 5596 aa4.45□□□□□ -1.7
SKA3-203ENST00000400018 KRTAP19-5Q3LI72 72 aa4.43□□□□□ -1.7
SKA3-203ENST00000400018 KRTAP6-3Q3LI67 103 aa4.41□□□□□ -1.7
SKA3-203ENST00000400018 KRTAP9-7A8MTY7 169 aa4.4□□□□□ -1.71
SKA3-203ENST00000400018 DSTQ03001 7570 aaKnown RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms