RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 BIRC6Q9NR09 4857 aa9.79□□□□□ -0.84
PCDHA1-202ENST00000394633 KRTAP4-5Q9BYR2 181 aa9.78□□□□□ -0.84
PCDHA1-202ENST00000394633 LINC01554Q52M75 96 aa9.75□□□□□ -0.85
PCDHA1-202ENST00000394633 CSAG1Q6PB30 78 aa9.75□□□□□ -0.85
PCDHA1-202ENST00000394633 A0A1B0GU33 70 aa9.72□□□□□ -0.85
PCDHA1-202ENST00000394633 ABCA13Q86UQ4 5058 aa9.72□□□□□ -0.85
PCDHA1-202ENST00000394633 DMBT1Q9UGM3 2413 aaPredicted RBP9.71□□□□□ -0.85
PCDHA1-202ENST00000394633 H1FX-AS1Q4G0G2 97 aa9.7□□□□□ -0.86
PCDHA1-202ENST00000394633 HERC2O95714 4834 aa9.69□□□□□ -0.86
PCDHA1-202ENST00000394633 KRTAP10-8P60410 259 aa9.68□□□□□ -0.86
PCDHA1-202ENST00000394633 COX6B2Q6YFQ2 88 aa9.66□□□□□ -0.86
PCDHA1-202ENST00000394633 MT1HL1P0DM35 61 aa9.63□□□□□ -0.87
PCDHA1-202ENST00000394633 KRTAP25-1Q3LHN0 102 aa9.47□□□□□ -0.89
PCDHA1-202ENST00000394633 KRTAP3-3Q9BYR6 98 aa9.45□□□□□ -0.9
PCDHA1-202ENST00000394633 PCLOQ9Y6V0 5065 aa9.45□□□□□ -0.9
PCDHA1-202ENST00000394633 K7ERS5 55 aa9.41□□□□□ -0.9
PCDHA1-202ENST00000394633 KRTAP10-6P60371 365 aaPredicted RBP9.41□□□□□ -0.9
PCDHA1-202ENST00000394633 RPL37P61927 97 aaKnown RBP9.41□□□□□ -0.9
PCDHA1-202ENST00000394633 XP32Q5T750 250 aa9.35□□□□□ -0.91
PCDHA1-202ENST00000394633 KRTAP13-4Q3LI77 160 aa9.34□□□□□ -0.91
PCDHA1-202ENST00000394633 KRTAP3-2Q9BYR7 98 aa9.34□□□□□ -0.91
PCDHA1-202ENST00000394633 LPAP08519 4548 aa9.34□□□□□ -0.91
PCDHA1-202ENST00000394633 CRIPTQ9P021 101 aa9.32□□□□□ -0.92
PCDHA1-202ENST00000394633 S4R3F8 94 aa9.31□□□□□ -0.92
PCDHA1-202ENST00000394633 J3QL48 77 aa9.29□□□□□ -0.92
PCDHA1-202ENST00000394633 HERC1Q15751 4861 aa9.28□□□□□ -0.92
PCDHA1-202ENST00000394633 LRP2P98164 4655 aa9.26□□□□□ -0.93
PCDHA1-202ENST00000394633 ROMO1P60602 79 aa9.25□□□□□ -0.93
PCDHA1-202ENST00000394633 A0A0D9SG42 100 aa9.24□□□□□ -0.93
PCDHA1-202ENST00000394633 P0C880 135 aa9.2□□□□□ -0.94
PCDHA1-202ENST00000394633 TPRXLQ17RH7 258 aa9.12□□□□□ -0.95
PCDHA1-202ENST00000394633 HMCN2Q8NDA2 5059 aa9.04□□□□□ -0.96
PCDHA1-202ENST00000394633 KRTAP12-2P59991 146 aa9.04□□□□□ -0.96
PCDHA1-202ENST00000394633 H3BS24 57 aa9.03□□□□□ -0.96
PCDHA1-202ENST00000394633 C10orf95Q9H7T3 257 aa8.97□□□□□ -0.97
PCDHA1-202ENST00000394633 KRTAP12-1P59990 96 aa8.97□□□□□ -0.97
PCDHA1-202ENST00000394633 SPINT4Q6UDR6 99 aa8.92□□□□□ -0.98
PCDHA1-202ENST00000394633 M0QZ58 72 aa8.86□□□□□ -0.99
PCDHA1-202ENST00000394633 MUC2Q02817 5179 aa8.86□□□□□ -0.99
PCDHA1-202ENST00000394633 MUC17Q685J3 4493 aa8.82□□□□□ -1
PCDHA1-202ENST00000394633 KRTAP4-1Q9BYQ7 146 aa8.76□□□□□ -1.01
PCDHA1-202ENST00000394633 SEC61BP60468 96 aaKnown RBP8.76□□□□□ -1.01
PCDHA1-202ENST00000394633 UBR4Q5T4S7 5183 aa8.73□□□□□ -1.01
PCDHA1-202ENST00000394633 KRTAP15-1Q3LI76 137 aa8.68□□□□□ -1.02
PCDHA1-202ENST00000394633 R4GN34 69 aa8.62□□□□□ -1.03
PCDHA1-202ENST00000394633 RNF213Q63HN8 5207 aa8.61□□□□□ -1.03
PCDHA1-202ENST00000394633 LORP23490 312 aaPredicted RBP8.56□□□□□ -1.04
PCDHA1-202ENST00000394633 FAT4Q6V0I7 4981 aa8.5□□□□□ -1.05
PCDHA1-202ENST00000394633 KRTAP19-2Q3LHN2 52 aa8.49□□□□□ -1.05
PCDHA1-202ENST00000394633 NDUFAF8A1L188 74 aa8.48□□□□□ -1.05
PCDHA1-202ENST00000394633 FLGP20930 4061 aaPredicted RBP8.39□□□□□ -1.07
PCDHA1-202ENST00000394633 LCE2CQ5TA81 110 aa8.29□□□□□ -1.08
PCDHA1-202ENST00000394633 PLAC4Q8WY50 150 aa8.22□□□□□ -1.09
PCDHA1-202ENST00000394633 CAMK2N1Q7Z7J9 78 aa8.2□□□□□ -1.1
PCDHA1-202ENST00000394633 PP632Q6XCG6 107 aa8.13□□□□□ -1.11
PCDHA1-202ENST00000394633 MT1HP80294 61 aa8.11□□□□□ -1.11
PCDHA1-202ENST00000394633 M0R2T5 61 aa7.99□□□□□ -1.13
PCDHA1-202ENST00000394633 TNP1P09430 55 aa7.91□□□□□ -1.14
PCDHA1-202ENST00000394633 KRTAP23-1A1A580 65 aa7.84□□□□□ -1.15
PCDHA1-202ENST00000394633 LUZP6Q538Z0 58 aa7.83□□□□□ -1.16
PCDHA1-202ENST00000394633 KRTAP9-8Q9BYQ0 159 aa7.82□□□□□ -1.16
PCDHA1-202ENST00000394633 LCE2AQ5TA79 106 aaPredicted RBP7.8□□□□□ -1.16
PCDHA1-202ENST00000394633 MT2AP02795 61 aa7.78□□□□□ -1.16
PCDHA1-202ENST00000394633 MT1FP04733 61 aa7.77□□□□□ -1.17
PCDHA1-202ENST00000394633 SPRR2GQ9BYE4 73 aa7.76□□□□□ -1.17
PCDHA1-202ENST00000394633 KRTAP19-1Q8IUB9 90 aa7.73□□□□□ -1.17
PCDHA1-202ENST00000394633 KRTAP10-10P60014 251 aa7.69□□□□□ -1.18
PCDHA1-202ENST00000394633 SPRR5A0A1B0GTR4 108 aa7.67□□□□□ -1.18
PCDHA1-202ENST00000394633 LCE3AQ5TA76 89 aa7.52□□□□□ -1.2
PCDHA1-202ENST00000394633 KRTAP9-3Q9BYQ3 159 aa7.52□□□□□ -1.21
PCDHA1-202ENST00000394633 A0A0A0MQY5 61 aa7.5□□□□□ -1.21
PCDHA1-202ENST00000394633 KRTAP19-8Q3LI54 63 aa7.4□□□□□ -1.23
PCDHA1-202ENST00000394633 USH2AO75445 5202 aa7.39□□□□□ -1.23
PCDHA1-202ENST00000394633 LCE2BO14633 110 aa7.36□□□□□ -1.23
PCDHA1-202ENST00000394633 MT1BP07438 61 aa7.33□□□□□ -1.24
PCDHA1-202ENST00000394633 KRTAP8-1Q8IUC2 63 aa7.32□□□□□ -1.24
PCDHA1-202ENST00000394633 KRTAP10-5P60370 271 aa7.31□□□□□ -1.24
PCDHA1-202ENST00000394633 MT1XP80297 61 aa7.29□□□□□ -1.24
PCDHA1-202ENST00000394633 FSIP2Q5CZC0 6907 aa7.18□□□□□ -1.26
PCDHA1-202ENST00000394633 KRTAP10-12P60413 245 aa7.16□□□□□ -1.26
PCDHA1-202ENST00000394633 KRTAP12-3P60328 96 aa7.13□□□□□ -1.27
PCDHA1-202ENST00000394633 KRTAP10-7P60409 375 aaPredicted RBP7.11□□□□□ -1.27
PCDHA1-202ENST00000394633 SSPOA2VEC9 5147 aa7.07□□□□□ -1.28
PCDHA1-202ENST00000394633 LCE2DQ5TA82 110 aaPredicted RBP6.99□□□□□ -1.29
PCDHA1-202ENST00000394633 PRO2289Q9P1D8 64 aa6.93□□□□□ -1.3
PCDHA1-202ENST00000394633 KMT2DO14686 5537 aa6.83□□□□□ -1.32
PCDHA1-202ENST00000394633 KRTAP9-2Q9BYQ4 174 aa6.82□□□□□ -1.32
PCDHA1-202ENST00000394633 KRTAP19-6Q3LI70 58 aa6.82□□□□□ -1.32
PCDHA1-202ENST00000394633 KRTAP19-5Q3LI72 72 aa6.82□□□□□ -1.32
PCDHA1-202ENST00000394633 INE1O15225 51 aa6.8□□□□□ -1.32
PCDHA1-202ENST00000394633 FCGBPQ9Y6R7 5405 aaPredicted RBP6.75□□□□□ -1.33
PCDHA1-202ENST00000394633 LCE3CQ5T5A8 94 aa6.73□□□□□ -1.33
PCDHA1-202ENST00000394633 KRTAP4-8A0A0G2JLE6 195 aa6.64□□□□□ -1.35
PCDHA1-202ENST00000394633 KRTAP4-8Q9BYQ9 185 aa6.64□□□□□ -1.35
PCDHA1-202ENST00000394633 CRCT1Q9UGL9 99 aa6.55□□□□□ -1.36
PCDHA1-202ENST00000394633 KRTAP9-6A8MVA2 160 aa6.53□□□□□ -1.36
PCDHA1-202ENST00000394633 KRTAP19-7Q3SYF9 63 aa6.5□□□□□ -1.37
PCDHA1-202ENST00000394633 MACF1Q9UPN3 7388 aaKnown RBP6.49□□□□□ -1.37
PCDHA1-202ENST00000394633 KRTAP4-7Q9BYR0 210 aa6.41□□□□□ -1.38
PCDHA1-202ENST00000394633 KRTAP2-3P0C7H8 128 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms