RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 KRTAP3-3Q9BYR6 98 aa5.57□□□□□ -1.52
NPHP4-202ENST00000378161 KRTAP23-1A1A580 65 aa5.56□□□□□ -1.52
NPHP4-202ENST00000378161 DNAH3Q8TD57 4116 aa5.52□□□□□ -1.53
NPHP4-202ENST00000378161 LYSTQ99698 3801 aa5.49□□□□□ -1.53
NPHP4-202ENST00000378161 PRKDCP78527 4128 aaKnown RBP5.47□□□□□ -1.53
NPHP4-202ENST00000378161 DNAH11Q96DT5 4516 aa5.47□□□□□ -1.53
NPHP4-202ENST00000378161 STARD9Q9P2P6 4700 aa5.46□□□□□ -1.54
NPHP4-202ENST00000378161 DNAH1Q9P2D7 4330 aa5.46□□□□□ -1.54
NPHP4-202ENST00000378161 KMT2AQ03164 3969 aa5.39□□□□□ -1.55
NPHP4-202ENST00000378161 KRTAP10-4P60372 401 aaPredicted RBP5.37□□□□□ -1.55
NPHP4-202ENST00000378161 DNAH5Q8TE73 4624 aa5.34□□□□□ -1.55
NPHP4-202ENST00000378161 DNAH7Q8WXX0 4024 aa5.31□□□□□ -1.56
NPHP4-202ENST00000378161 VPS13DQ5THJ4 4388 aa5.31□□□□□ -1.56
NPHP4-202ENST00000378161 FAT1Q14517 4588 aa5.31□□□□□ -1.56
NPHP4-202ENST00000378161 DNAH8Q96JB1 4490 aa5.29□□□□□ -1.56
NPHP4-202ENST00000378161 KRTAP10-10P60014 251 aa5.29□□□□□ -1.56
NPHP4-202ENST00000378161 LRP1BQ9NZR2 4599 aa5.28□□□□□ -1.56
NPHP4-202ENST00000378161 MT1HL1P0DM35 61 aa5.26□□□□□ -1.57
NPHP4-202ENST00000378161 DYNC2H1Q8NCM8 4307 aaKnown RBP5.25□□□□□ -1.57
NPHP4-202ENST00000378161 KRTAP4-5Q9BYR2 181 aa5.24□□□□□ -1.57
NPHP4-202ENST00000378161 DNAH17Q9UFH2 4485 aa5.22□□□□□ -1.57
NPHP4-202ENST00000378161 FRAS1Q86XX4 4008 aa5.22□□□□□ -1.57
NPHP4-202ENST00000378161 DNAH2Q9P225 4427 aa5.21□□□□□ -1.57
NPHP4-202ENST00000378161 DNAH6Q9C0G6 4158 aa5.19□□□□□ -1.58
NPHP4-202ENST00000378161 DYNC1H1Q14204 4646 aaKnown RBP5.16□□□□□ -1.58
NPHP4-202ENST00000378161 MYCBP2O75592 4640 aa5.13□□□□□ -1.59
NPHP4-202ENST00000378161 VPS13BQ7Z7G8 4022 aa5.12□□□□□ -1.59
NPHP4-202ENST00000378161 SPRR5A0A1B0GTR4 108 aa5.11□□□□□ -1.59
NPHP4-202ENST00000378161 HECTD4Q9Y4D8 3996 aa5.09□□□□□ -1.59
NPHP4-202ENST00000378161 HYDINQ4G0P3 5121 aa5.09□□□□□ -1.59
NPHP4-202ENST00000378161 KIAA1109Q2LD37 5005 aa5.06□□□□□ -1.6
NPHP4-202ENST00000378161 RYR1P21817 5038 aa5.05□□□□□ -1.6
NPHP4-202ENST00000378161 PKHD1P08F94 4074 aa5.03□□□□□ -1.6
NPHP4-202ENST00000378161 LRP1Q07954 4544 aaKnown RBP5.01□□□□□ -1.61
NPHP4-202ENST00000378161 FAT3Q8TDW7 4589 aa5.01□□□□□ -1.61
NPHP4-202ENST00000378161 SACSQ9NZJ4 4579 aa5□□□□□ -1.61
NPHP4-202ENST00000378161 APOBP04114 4563 aaKnown RBP4.97□□□□□ -1.61
NPHP4-202ENST00000378161 RYR3Q15413 4870 aa4.95□□□□□ -1.62
NPHP4-202ENST00000378161 LORP23490 312 aaPredicted RBP4.94□□□□□ -1.62
NPHP4-202ENST00000378161 FAT2Q9NYQ8 4349 aa4.93□□□□□ -1.62
NPHP4-202ENST00000378161 KMT2CQ8NEZ4 4911 aaKnown RBP4.9□□□□□ -1.62
NPHP4-202ENST00000378161 LCE3AQ5TA76 89 aa4.84□□□□□ -1.63
NPHP4-202ENST00000378161 KRTAP17-1Q9BYP8 105 aa4.84□□□□□ -1.63
NPHP4-202ENST00000378161 RYR2Q92736 4967 aa4.81□□□□□ -1.64
NPHP4-202ENST00000378161 PKD1P98161 4303 aa4.79□□□□□ -1.64
NPHP4-202ENST00000378161 LRP2P98164 4655 aa4.76□□□□□ -1.65
NPHP4-202ENST00000378161 KRTAP12-3P60328 96 aa4.75□□□□□ -1.65
NPHP4-202ENST00000378161 KRTAP4-1Q9BYQ7 146 aa4.74□□□□□ -1.65
NPHP4-202ENST00000378161 KRTAP10-12P60413 245 aa4.71□□□□□ -1.66
NPHP4-202ENST00000378161 HERC2O95714 4834 aa4.7□□□□□ -1.66
NPHP4-202ENST00000378161 PKHD1L1Q86WI1 4243 aa4.68□□□□□ -1.66
NPHP4-202ENST00000378161 HSPG2P98160 4391 aa4.67□□□□□ -1.66
NPHP4-202ENST00000378161 LPAP08519 4548 aa4.62□□□□□ -1.67
NPHP4-202ENST00000378161 EPPK1P58107 5090 aaKnown RBP4.6□□□□□ -1.67
NPHP4-202ENST00000378161 SPRR2GQ9BYE4 73 aa4.57□□□□□ -1.68
NPHP4-202ENST00000378161 KRTAP8-1Q8IUC2 63 aa4.55□□□□□ -1.68
NPHP4-202ENST00000378161 BIRC6Q9NR09 4857 aa4.53□□□□□ -1.68
NPHP4-202ENST00000378161 MT1HP80294 61 aa4.49□□□□□ -1.69
NPHP4-202ENST00000378161 ABCA13Q86UQ4 5058 aa4.46□□□□□ -1.69
NPHP4-202ENST00000378161 MT2AP02795 61 aa4.44□□□□□ -1.7
NPHP4-202ENST00000378161 TNXBP22105 4242 aa4.44□□□□□ -1.7
NPHP4-202ENST00000378161 MUC2Q02817 5179 aa4.42□□□□□ -1.7
NPHP4-202ENST00000378161 PCLOQ9Y6V0 5065 aa4.41□□□□□ -1.7
NPHP4-202ENST00000378161 MT1FP04733 61 aa4.38□□□□□ -1.71
NPHP4-202ENST00000378161 KRTAP19-1Q8IUB9 90 aa4.37□□□□□ -1.71
NPHP4-202ENST00000378161 HERC1Q15751 4861 aa4.35□□□□□ -1.71
NPHP4-202ENST00000378161 RNF213Q63HN8 5207 aa4.33□□□□□ -1.72
NPHP4-202ENST00000378161 LCE3CQ5T5A8 94 aa4.32□□□□□ -1.72
NPHP4-202ENST00000378161 KRTAP10-5P60370 271 aa4.32□□□□□ -1.72
NPHP4-202ENST00000378161 KRTAP19-8Q3LI54 63 aa4.29□□□□□ -1.72
NPHP4-202ENST00000378161 FAT4Q6V0I7 4981 aa4.25□□□□□ -1.73
NPHP4-202ENST00000378161 KRTAP12-4P60329 112 aa4.24□□□□□ -1.73
NPHP4-202ENST00000378161 CRCT1Q9UGL9 99 aa4.23□□□□□ -1.73
NPHP4-202ENST00000378161 KRTAP19-2Q3LHN2 52 aa4.23□□□□□ -1.73
NPHP4-202ENST00000378161 UBR4Q5T4S7 5183 aa4.21□□□□□ -1.74
NPHP4-202ENST00000378161 KRTAP19-5Q3LI72 72 aa4.2□□□□□ -1.74
NPHP4-202ENST00000378161 LCE2CQ5TA81 110 aa4.2□□□□□ -1.74
NPHP4-202ENST00000378161 MT1XP80297 61 aa4.17□□□□□ -1.74
NPHP4-202ENST00000378161 KRTAP10-7P60409 375 aaPredicted RBP4.15□□□□□ -1.74
NPHP4-202ENST00000378161 FSIP2Q5CZC0 6907 aa4.15□□□□□ -1.74
NPHP4-202ENST00000378161 MT1BP07438 61 aa4.15□□□□□ -1.75
NPHP4-202ENST00000378161 MUC17Q685J3 4493 aa4.15□□□□□ -1.75
NPHP4-202ENST00000378161 KRTAP9-8Q9BYQ0 159 aa4.14□□□□□ -1.75
NPHP4-202ENST00000378161 KRTAP19-4Q3LI73 84 aa4.13□□□□□ -1.75
NPHP4-202ENST00000378161 FLGP20930 4061 aaPredicted RBP4.08□□□□□ -1.76
NPHP4-202ENST00000378161 SPRR2FQ96RM1 72 aa4.06□□□□□ -1.76
NPHP4-202ENST00000378161 HMCN2Q8NDA2 5059 aa4.03□□□□□ -1.76
NPHP4-202ENST00000378161 KRTAP9-3Q9BYQ3 159 aa4□□□□□ -1.77
NPHP4-202ENST00000378161 KRTAP2-3P0C7H8 128 aa4□□□□□ -1.77
NPHP4-202ENST00000378161 KRTAP2-4Q9BYR9 128 aa4□□□□□ -1.77
NPHP4-202ENST00000378161 KRTAP2-1Q9BYU5 128 aa4□□□□□ -1.77
NPHP4-202ENST00000378161 KRTAP4-8A0A0G2JLE6 195 aa3.88□□□□□ -1.79
NPHP4-202ENST00000378161 KRTAP4-8Q9BYQ9 185 aa3.88□□□□□ -1.79
NPHP4-202ENST00000378161 LCE2BO14633 110 aa3.88□□□□□ -1.79
NPHP4-202ENST00000378161 SPRR2EP22531 72 aa3.88□□□□□ -1.79
NPHP4-202ENST00000378161 SPRR2BP35325 72 aa3.88□□□□□ -1.79
NPHP4-202ENST00000378161 SPRR2AP35326 72 aa3.88□□□□□ -1.79
NPHP4-202ENST00000378161 USH2AO75445 5202 aa3.82□□□□□ -1.8
NPHP4-202ENST00000378161 PRM1P04553 51 aa3.8□□□□□ -1.8
NPHP4-202ENST00000378161 KRTAP9-2Q9BYQ4 174 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 245.5 ms