RNA–Protein interactions for RNA: ENST00000377340.6

CRNKL1-202, Transcript of crooked neck pre-mRNA splicing factor 1, humanhuman

TSL 1 (best) BASIC

Gene CRNKL1, Length 4,406 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNKL1-202ENST00000377340 ALMS1Q8TCU4 4167 aa4.21□□□□□ -1.74
CRNKL1-202ENST00000377340 KMT2AQ03164 3969 aa4.2□□□□□ -1.74
CRNKL1-202ENST00000377340 VPS13DQ5THJ4 4388 aa4.2□□□□□ -1.74
CRNKL1-202ENST00000377340 P0C880 135 aa4.2□□□□□ -1.74
CRNKL1-202ENST00000377340 KRTAP3-1Q9BYR8 98 aa4.1□□□□□ -1.75
CRNKL1-202ENST00000377340 MYCBP2O75592 4640 aa4.09□□□□□ -1.75
CRNKL1-202ENST00000377340 KMT2CQ8NEZ4 4911 aaKnown RBP4.09□□□□□ -1.75
CRNKL1-202ENST00000377340 C10orf95Q9H7T3 257 aa4.09□□□□□ -1.75
CRNKL1-202ENST00000377340 TNP1P09430 55 aa4.08□□□□□ -1.76
CRNKL1-202ENST00000377340 KRTAP17-1Q9BYP8 105 aa4.08□□□□□ -1.76
CRNKL1-202ENST00000377340 FAT3Q8TDW7 4589 aa4.08□□□□□ -1.76
CRNKL1-202ENST00000377340 VPS13BQ7Z7G8 4022 aa4.07□□□□□ -1.76
CRNKL1-202ENST00000377340 SACSQ9NZJ4 4579 aa4.07□□□□□ -1.76
CRNKL1-202ENST00000377340 HERC2O95714 4834 aa4.07□□□□□ -1.76
CRNKL1-202ENST00000377340 DNAH2Q9P225 4427 aa4.07□□□□□ -1.76
CRNKL1-202ENST00000377340 DNAH17Q9UFH2 4485 aa4.06□□□□□ -1.76
CRNKL1-202ENST00000377340 APOBP04114 4563 aaKnown RBP4.04□□□□□ -1.76
CRNKL1-202ENST00000377340 RYR2Q92736 4967 aa4.04□□□□□ -1.76
CRNKL1-202ENST00000377340 DNAH8Q96JB1 4490 aa4.04□□□□□ -1.76
CRNKL1-202ENST00000377340 PRO2289Q9P1D8 64 aa4.03□□□□□ -1.76
CRNKL1-202ENST00000377340 FAT2Q9NYQ8 4349 aa4.03□□□□□ -1.76
CRNKL1-202ENST00000377340 LRP1Q07954 4544 aaKnown RBP4.03□□□□□ -1.76
CRNKL1-202ENST00000377340 H0YAA0 97 aa4.02□□□□□ -1.77
CRNKL1-202ENST00000377340 CMYA5Q8N3K9 4069 aa4.02□□□□□ -1.77
CRNKL1-202ENST00000377340 DYNC2H1Q8NCM8 4307 aaKnown RBP4.01□□□□□ -1.77
CRNKL1-202ENST00000377340 DNAH3Q8TD57 4116 aa3.99□□□□□ -1.77
CRNKL1-202ENST00000377340 BIRC6Q9NR09 4857 aa3.97□□□□□ -1.77
CRNKL1-202ENST00000377340 PKHD1P08F94 4074 aa3.96□□□□□ -1.78
CRNKL1-202ENST00000377340 KRTAP4-1Q9BYQ7 146 aa3.95□□□□□ -1.78
CRNKL1-202ENST00000377340 DNAH6Q9C0G6 4158 aa3.94□□□□□ -1.78
CRNKL1-202ENST00000377340 DNAH7Q8WXX0 4024 aa3.93□□□□□ -1.78
CRNKL1-202ENST00000377340 PCLOQ9Y6V0 5065 aa3.92□□□□□ -1.78
CRNKL1-202ENST00000377340 EPPK1P58107 5090 aaKnown RBP3.9□□□□□ -1.79
CRNKL1-202ENST00000377340 LRP2P98164 4655 aa3.89□□□□□ -1.79
CRNKL1-202ENST00000377340 KRTAP12-2P59991 146 aa3.88□□□□□ -1.79
CRNKL1-202ENST00000377340 KRTAP10-6P60371 365 aaPredicted RBP3.86□□□□□ -1.79
CRNKL1-202ENST00000377340 KRTAP3-3Q9BYR6 98 aa3.86□□□□□ -1.79
CRNKL1-202ENST00000377340 KRTAP13-4Q3LI77 160 aa3.85□□□□□ -1.79
CRNKL1-202ENST00000377340 KRTAP12-1P59990 96 aa3.83□□□□□ -1.8
CRNKL1-202ENST00000377340 HSPG2P98160 4391 aa3.81□□□□□ -1.8
CRNKL1-202ENST00000377340 KRTAP15-1Q3LI76 137 aa3.81□□□□□ -1.8
CRNKL1-202ENST00000377340 MT1HP80294 61 aa3.79□□□□□ -1.8
CRNKL1-202ENST00000377340 LORP23490 312 aaPredicted RBP3.78□□□□□ -1.8
CRNKL1-202ENST00000377340 ABCA13Q86UQ4 5058 aa3.78□□□□□ -1.8
CRNKL1-202ENST00000377340 KRTAP3-2Q9BYR7 98 aa3.77□□□□□ -1.81
CRNKL1-202ENST00000377340 PP632Q6XCG6 107 aa3.77□□□□□ -1.81
CRNKL1-202ENST00000377340 FRAS1Q86XX4 4008 aa3.77□□□□□ -1.81
CRNKL1-202ENST00000377340 HECTD4Q9Y4D8 3996 aa3.76□□□□□ -1.81
CRNKL1-202ENST00000377340 FSIP2Q5CZC0 6907 aa3.73□□□□□ -1.81
CRNKL1-202ENST00000377340 MT2AP02795 61 aa3.69□□□□□ -1.82
CRNKL1-202ENST00000377340 HERC1Q15751 4861 aa3.69□□□□□ -1.82
CRNKL1-202ENST00000377340 PKD1P98161 4303 aa3.67□□□□□ -1.82
CRNKL1-202ENST00000377340 UBR4Q5T4S7 5183 aa3.67□□□□□ -1.82
CRNKL1-202ENST00000377340 LPAP08519 4548 aa3.65□□□□□ -1.83
CRNKL1-202ENST00000377340 MT1FP04733 61 aa3.64□□□□□ -1.83
CRNKL1-202ENST00000377340 KRTAP23-1A1A580 65 aa3.64□□□□□ -1.83
CRNKL1-202ENST00000377340 RNF213Q63HN8 5207 aa3.62□□□□□ -1.83
CRNKL1-202ENST00000377340 KRTAP10-12P60413 245 aa3.6□□□□□ -1.83
CRNKL1-202ENST00000377340 CRCT1Q9UGL9 99 aa3.54□□□□□ -1.84
CRNKL1-202ENST00000377340 KRTAP8-1Q8IUC2 63 aa3.52□□□□□ -1.85
CRNKL1-202ENST00000377340 LCE2CQ5TA81 110 aa3.5□□□□□ -1.85
CRNKL1-202ENST00000377340 SPRR2GQ9BYE4 73 aa3.49□□□□□ -1.85
CRNKL1-202ENST00000377340 MUC2Q02817 5179 aa3.48□□□□□ -1.85
CRNKL1-202ENST00000377340 INE1O15225 51 aa3.47□□□□□ -1.85
CRNKL1-202ENST00000377340 LCE3AQ5TA76 89 aa3.47□□□□□ -1.85
CRNKL1-202ENST00000377340 KRTAP12-3P60328 96 aa3.46□□□□□ -1.86
CRNKL1-202ENST00000377340 KRTAP9-8Q9BYQ0 159 aa3.44□□□□□ -1.86
CRNKL1-202ENST00000377340 PKHD1L1Q86WI1 4243 aa3.44□□□□□ -1.86
CRNKL1-202ENST00000377340 FAT4Q6V0I7 4981 aa3.44□□□□□ -1.86
CRNKL1-202ENST00000377340 KRTAP19-1Q8IUB9 90 aa3.43□□□□□ -1.86
CRNKL1-202ENST00000377340 SPRR2FQ96RM1 72 aa3.41□□□□□ -1.86
CRNKL1-202ENST00000377340 TNXBP22105 4242 aa3.4□□□□□ -1.86
CRNKL1-202ENST00000377340 HMCN2Q8NDA2 5059 aa3.39□□□□□ -1.87
CRNKL1-202ENST00000377340 KRTAP19-2Q3LHN2 52 aa3.38□□□□□ -1.87
CRNKL1-202ENST00000377340 KRTAP9-3Q9BYQ3 159 aa3.34□□□□□ -1.88
CRNKL1-202ENST00000377340 KRTAP9-2Q9BYQ4 174 aa3.32□□□□□ -1.88
CRNKL1-202ENST00000377340 KRTAP19-8Q3LI54 63 aa3.31□□□□□ -1.88
CRNKL1-202ENST00000377340 MT1BP07438 61 aa3.3□□□□□ -1.88
CRNKL1-202ENST00000377340 MUC17Q685J3 4493 aa3.3□□□□□ -1.88
CRNKL1-202ENST00000377340 LCE2BO14633 110 aa3.29□□□□□ -1.88
CRNKL1-202ENST00000377340 KRTAP10-7P60409 375 aaPredicted RBP3.27□□□□□ -1.89
CRNKL1-202ENST00000377340 LCE2AQ5TA79 106 aaPredicted RBP3.27□□□□□ -1.89
CRNKL1-202ENST00000377340 FLGP20930 4061 aaPredicted RBP3.25□□□□□ -1.89
CRNKL1-202ENST00000377340 KRTAP10-5P60370 271 aa3.25□□□□□ -1.89
CRNKL1-202ENST00000377340 KRTAP19-5Q3LI72 72 aa3.24□□□□□ -1.89
CRNKL1-202ENST00000377340 MT1XP80297 61 aa3.24□□□□□ -1.89
CRNKL1-202ENST00000377340 KRTAP4-8A0A0G2JLE6 195 aa3.24□□□□□ -1.89
CRNKL1-202ENST00000377340 KRTAP4-8Q9BYQ9 185 aa3.24□□□□□ -1.89
CRNKL1-202ENST00000377340 SYNE1Q8NF91 8797 aaKnown RBP3.22□□□□□ -1.89
CRNKL1-202ENST00000377340 SPRR2EP22531 72 aa3.19□□□□□ -1.9
CRNKL1-202ENST00000377340 SPRR2BP35325 72 aa3.19□□□□□ -1.9
CRNKL1-202ENST00000377340 SPRR2AP35326 72 aa3.19□□□□□ -1.9
CRNKL1-202ENST00000377340 KRTAP9-6A0A140TA67 174 aa3.13□□□□□ -1.91
CRNKL1-202ENST00000377340 OBSCNQ5VST9 7968 aa3.12□□□□□ -1.91
CRNKL1-202ENST00000377340 USH2AO75445 5202 aa3.08□□□□□ -1.92
CRNKL1-202ENST00000377340 SPRR2DP22532 72 aa3.07□□□□□ -1.92
CRNKL1-202ENST00000377340 SYNE2Q8WXH0 6885 aaKnown RBP3.07□□□□□ -1.92
CRNKL1-202ENST00000377340 LCE2DQ5TA82 110 aaPredicted RBP3.07□□□□□ -1.92
CRNKL1-202ENST00000377340 KRTAP19-6Q3LI70 58 aa3.05□□□□□ -1.92
CRNKL1-202ENST00000377340 LCE3CQ5T5A8 94 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms