RNA–Protein interactions for RNA: ENST00000374198.4

PRPF4-201, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRPF4, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-201ENST00000374198 HERC2O95714 4834 aa6.88□□□□□ -1.31
PRPF4-201ENST00000374198 DNAH5Q8TE73 4624 aa6.87□□□□□ -1.31
PRPF4-201ENST00000374198 RYR1P21817 5038 aa6.85□□□□□ -1.31
PRPF4-201ENST00000374198 SMR3BP02814 79 aaPredicted RBP6.84□□□□□ -1.31
PRPF4-201ENST00000374198 C10orf95Q9H7T3 257 aa6.84□□□□□ -1.31
PRPF4-201ENST00000374198 KRTAP17-1Q9BYP8 105 aa6.82□□□□□ -1.32
PRPF4-201ENST00000374198 KRTAP4-5Q9BYR2 181 aa6.82□□□□□ -1.32
PRPF4-201ENST00000374198 APOBP04114 4563 aaKnown RBP6.81□□□□□ -1.32
PRPF4-201ENST00000374198 HSPG2P98160 4391 aa6.8□□□□□ -1.32
PRPF4-201ENST00000374198 Q5VSD8 79 aa6.8□□□□□ -1.32
PRPF4-201ENST00000374198 A0A0D9SG42 100 aa6.78□□□□□ -1.32
PRPF4-201ENST00000374198 KRTAP13-4Q3LI77 160 aa6.78□□□□□ -1.32
PRPF4-201ENST00000374198 KRTAP10-6P60371 365 aaPredicted RBP6.76□□□□□ -1.33
PRPF4-201ENST00000374198 A0A0A0MQY5 61 aa6.74□□□□□ -1.33
PRPF4-201ENST00000374198 C9orf92A6NGG3 77 aa6.74□□□□□ -1.33
PRPF4-201ENST00000374198 RPS29P62273 56 aaKnown RBP6.71□□□□□ -1.33
PRPF4-201ENST00000374198 PCLOQ9Y6V0 5065 aa6.71□□□□□ -1.34
PRPF4-201ENST00000374198 ABCA13Q86UQ4 5058 aa6.7□□□□□ -1.34
PRPF4-201ENST00000374198 FAT1Q14517 4588 aa6.68□□□□□ -1.34
PRPF4-201ENST00000374198 KRTAP3-2Q9BYR7 98 aa6.67□□□□□ -1.34
PRPF4-201ENST00000374198 S4R3F8 94 aa6.66□□□□□ -1.34
PRPF4-201ENST00000374198 KRTAP3-3Q9BYR6 98 aa6.64□□□□□ -1.35
PRPF4-201ENST00000374198 DMBT1Q9UGM3 2413 aaPredicted RBP6.62□□□□□ -1.35
PRPF4-201ENST00000374198 KRTAP10-4P60372 401 aaPredicted RBP6.62□□□□□ -1.35
PRPF4-201ENST00000374198 KRTAP12-2P59991 146 aa6.61□□□□□ -1.35
PRPF4-201ENST00000374198 VPS13BQ7Z7G8 4022 aa6.6□□□□□ -1.35
PRPF4-201ENST00000374198 J3QL48 77 aa6.58□□□□□ -1.36
PRPF4-201ENST00000374198 XP32Q5T750 250 aa6.56□□□□□ -1.36
PRPF4-201ENST00000374198 KRTAP12-1P59990 96 aa6.52□□□□□ -1.37
PRPF4-201ENST00000374198 MYCBP2O75592 4640 aa6.51□□□□□ -1.37
PRPF4-201ENST00000374198 LUZP6Q538Z0 58 aa6.51□□□□□ -1.37
PRPF4-201ENST00000374198 LRP1Q07954 4544 aaKnown RBP6.43□□□□□ -1.38
PRPF4-201ENST00000374198 PKHD1L1Q86WI1 4243 aa6.43□□□□□ -1.38
PRPF4-201ENST00000374198 MT1HL1P0DM35 61 aa6.4□□□□□ -1.38
PRPF4-201ENST00000374198 FAT3Q8TDW7 4589 aa6.39□□□□□ -1.39
PRPF4-201ENST00000374198 HERC1Q15751 4861 aa6.39□□□□□ -1.39
PRPF4-201ENST00000374198 KRTAP10-8P60410 259 aa6.38□□□□□ -1.39
PRPF4-201ENST00000374198 PLAC4Q8WY50 150 aa6.36□□□□□ -1.39
PRPF4-201ENST00000374198 M0QZ58 72 aa6.33□□□□□ -1.4
PRPF4-201ENST00000374198 TNXBP22105 4242 aa6.26□□□□□ -1.41
PRPF4-201ENST00000374198 HMCN2Q8NDA2 5059 aa6.18□□□□□ -1.42
PRPF4-201ENST00000374198 R4GN34 69 aa6.06□□□□□ -1.44
PRPF4-201ENST00000374198 LRP2P98164 4655 aa6.04□□□□□ -1.44
PRPF4-201ENST00000374198 UBR4Q5T4S7 5183 aa6.04□□□□□ -1.44
PRPF4-201ENST00000374198 PP632Q6XCG6 107 aa6.03□□□□□ -1.44
PRPF4-201ENST00000374198 LPAP08519 4548 aa5.99□□□□□ -1.45
PRPF4-201ENST00000374198 SEC61BP60468 96 aaKnown RBP5.98□□□□□ -1.45
PRPF4-201ENST00000374198 LORP23490 312 aaPredicted RBP5.89□□□□□ -1.47
PRPF4-201ENST00000374198 RNF213Q63HN8 5207 aa5.89□□□□□ -1.47
PRPF4-201ENST00000374198 SPRR5A0A1B0GTR4 108 aa5.84□□□□□ -1.47
PRPF4-201ENST00000374198 CAMK2N1Q7Z7J9 78 aa5.82□□□□□ -1.48
PRPF4-201ENST00000374198 MUC2Q02817 5179 aa5.74□□□□□ -1.49
PRPF4-201ENST00000374198 PRO2289Q9P1D8 64 aa5.73□□□□□ -1.49
PRPF4-201ENST00000374198 MUC17Q685J3 4493 aa5.72□□□□□ -1.49
PRPF4-201ENST00000374198 KRTAP23-1A1A580 65 aa5.7□□□□□ -1.5
PRPF4-201ENST00000374198 KRTAP4-1Q9BYQ7 146 aa5.68□□□□□ -1.5
PRPF4-201ENST00000374198 TNP1P09430 55 aa5.67□□□□□ -1.5
PRPF4-201ENST00000374198 FAT4Q6V0I7 4981 aa5.59□□□□□ -1.51
PRPF4-201ENST00000374198 INE1O15225 51 aa5.56□□□□□ -1.52
PRPF4-201ENST00000374198 LCE2AQ5TA79 106 aaPredicted RBP5.56□□□□□ -1.52
PRPF4-201ENST00000374198 LCE2DQ5TA82 110 aaPredicted RBP5.55□□□□□ -1.52
PRPF4-201ENST00000374198 KRTAP19-2Q3LHN2 52 aa5.49□□□□□ -1.53
PRPF4-201ENST00000374198 LCE2CQ5TA81 110 aa5.49□□□□□ -1.53
PRPF4-201ENST00000374198 MT1HP80294 61 aa5.44□□□□□ -1.54
PRPF4-201ENST00000374198 M0R2T5 61 aa5.43□□□□□ -1.54
PRPF4-201ENST00000374198 KRTAP9-2Q9BYQ4 174 aa5.36□□□□□ -1.55
PRPF4-201ENST00000374198 LCE3AQ5TA76 89 aa5.31□□□□□ -1.56
PRPF4-201ENST00000374198 FLGP20930 4061 aaPredicted RBP5.28□□□□□ -1.56
PRPF4-201ENST00000374198 KRTAP8-1Q8IUC2 63 aa5.17□□□□□ -1.58
PRPF4-201ENST00000374198 KRTAP9-8Q9BYQ0 159 aa5.15□□□□□ -1.58
PRPF4-201ENST00000374198 KRTAP9-6A0A140TA67 174 aa5.14□□□□□ -1.59
PRPF4-201ENST00000374198 SPRR2GQ9BYE4 73 aa5.14□□□□□ -1.59
PRPF4-201ENST00000374198 MT2AP02795 61 aa5.1□□□□□ -1.59
PRPF4-201ENST00000374198 FSIP2Q5CZC0 6907 aa5.09□□□□□ -1.59
PRPF4-201ENST00000374198 KRTAP10-10P60014 251 aa5.09□□□□□ -1.59
PRPF4-201ENST00000374198 KRTAP19-1Q8IUB9 90 aa5.09□□□□□ -1.59
PRPF4-201ENST00000374198 CRCT1Q9UGL9 99 aa5.09□□□□□ -1.6
PRPF4-201ENST00000374198 MT1FP04733 61 aa5.07□□□□□ -1.6
PRPF4-201ENST00000374198 KRTAP10-12P60413 245 aa5.06□□□□□ -1.6
PRPF4-201ENST00000374198 KRTAP12-3P60328 96 aa5.03□□□□□ -1.6
PRPF4-201ENST00000374198 KRTAP9-3Q9BYQ3 159 aa4.98□□□□□ -1.61
PRPF4-201ENST00000374198 LCE2BO14633 110 aa4.94□□□□□ -1.62
PRPF4-201ENST00000374198 USH2AO75445 5202 aa4.91□□□□□ -1.62
PRPF4-201ENST00000374198 KRTAP10-5P60370 271 aa4.88□□□□□ -1.63
PRPF4-201ENST00000374198 SSPOA2VEC9 5147 aa4.84□□□□□ -1.63
PRPF4-201ENST00000374198 MT1XP80297 61 aa4.84□□□□□ -1.63
PRPF4-201ENST00000374198 KRTAP19-8Q3LI54 63 aa4.81□□□□□ -1.64
PRPF4-201ENST00000374198 LCE3CQ5T5A8 94 aa4.77□□□□□ -1.65
PRPF4-201ENST00000374198 KRTAP10-7P60409 375 aaPredicted RBP4.76□□□□□ -1.65
PRPF4-201ENST00000374198 MT1BP07438 61 aa4.75□□□□□ -1.65
PRPF4-201ENST00000374198 KRTAP19-6Q3LI70 58 aa4.74□□□□□ -1.65
PRPF4-201ENST00000374198 FCGBPQ9Y6R7 5405 aaPredicted RBP4.73□□□□□ -1.65
PRPF4-201ENST00000374198 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.72□□□□□ -1.65
PRPF4-201ENST00000374198 KRTAP2-3P0C7H8 128 aa4.68□□□□□ -1.66
PRPF4-201ENST00000374198 KRTAP2-4Q9BYR9 128 aa4.68□□□□□ -1.66
PRPF4-201ENST00000374198 KRTAP2-1Q9BYU5 128 aa4.68□□□□□ -1.66
PRPF4-201ENST00000374198 KRTAP9-6A8MVA2 160 aa4.66□□□□□ -1.66
PRPF4-201ENST00000374198 KRTAP19-5Q3LI72 72 aa4.65□□□□□ -1.67
PRPF4-201ENST00000374198 KRTAP9-7A8MTY7 169 aa4.64□□□□□ -1.67
PRPF4-201ENST00000374198 MACF1Q9UPN3 7388 aaKnown RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 144.6 ms