RNA–Protein interactions for RNA: ENST00000372276.7

CD40-201, Transcript of CD40 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD40, Length 1,623 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-201ENST00000372276 FAT3Q8TDW7 4589 aa9.48□□□□□ -0.89
CD40-201ENST00000372276 TNXBP22105 4242 aa9.48□□□□□ -0.89
CD40-201ENST00000372276 XP32Q5T750 250 aa9.44□□□□□ -0.9
CD40-201ENST00000372276 A0A1B0GU33 70 aa9.42□□□□□ -0.9
CD40-201ENST00000372276 MYCBP2O75592 4640 aa9.41□□□□□ -0.9
CD40-201ENST00000372276 H1FX-AS1Q4G0G2 97 aa9.38□□□□□ -0.91
CD40-201ENST00000372276 MT1HL1P0DM35 61 aa9.35□□□□□ -0.91
CD40-201ENST00000372276 DMBT1Q9UGM3 2413 aaPredicted RBP9.31□□□□□ -0.92
CD40-201ENST00000372276 LRP1Q07954 4544 aaKnown RBP9.31□□□□□ -0.92
CD40-201ENST00000372276 RBM12B-AS1Q9P1G2 102 aa9.31□□□□□ -0.92
CD40-201ENST00000372276 H0YAA0 97 aa9.3□□□□□ -0.92
CD40-201ENST00000372276 TPRXLQ17RH7 258 aa9.27□□□□□ -0.92
CD40-201ENST00000372276 J3QL48 77 aa9.26□□□□□ -0.93
CD40-201ENST00000372276 S4R3F8 94 aa9.26□□□□□ -0.93
CD40-201ENST00000372276 K7ERS5 55 aa9.23□□□□□ -0.93
CD40-201ENST00000372276 KRTAP3-3Q9BYR6 98 aa9.2□□□□□ -0.94
CD40-201ENST00000372276 HERC1Q15751 4861 aa9.14□□□□□ -0.95
CD40-201ENST00000372276 KRTAP10-6P60371 365 aaPredicted RBP9.1□□□□□ -0.95
CD40-201ENST00000372276 PRAC1Q96KF2 57 aa9.09□□□□□ -0.95
CD40-201ENST00000372276 ADM2Q7Z4H4 148 aa9.06□□□□□ -0.96
CD40-201ENST00000372276 KRTAP3-2Q9BYR7 98 aa9.05□□□□□ -0.96
CD40-201ENST00000372276 CSAG1Q6PB30 78 aa9.02□□□□□ -0.96
CD40-201ENST00000372276 SEC61BP60468 96 aaKnown RBP8.98□□□□□ -0.97
CD40-201ENST00000372276 LINC01554Q52M75 96 aa8.94□□□□□ -0.98
CD40-201ENST00000372276 HMCN2Q8NDA2 5059 aa8.9□□□□□ -0.99
CD40-201ENST00000372276 M0QZ58 72 aa8.88□□□□□ -0.99
CD40-201ENST00000372276 P0C880 135 aa8.88□□□□□ -0.99
CD40-201ENST00000372276 KRTAP13-4Q3LI77 160 aa8.87□□□□□ -0.99
CD40-201ENST00000372276 ROMO1P60602 79 aa8.87□□□□□ -0.99
CD40-201ENST00000372276 KRTAP25-1Q3LHN0 102 aa8.85□□□□□ -0.99
CD40-201ENST00000372276 A0A0D9SG42 100 aa8.81□□□□□ -1
CD40-201ENST00000372276 LRP2P98164 4655 aa8.78□□□□□ -1
CD40-201ENST00000372276 KRTAP12-1P59990 96 aa8.65□□□□□ -1.03
CD40-201ENST00000372276 LPAP08519 4548 aa8.64□□□□□ -1.03
CD40-201ENST00000372276 KRTAP12-2P59991 146 aa8.62□□□□□ -1.03
CD40-201ENST00000372276 UBR4Q5T4S7 5183 aa8.61□□□□□ -1.03
CD40-201ENST00000372276 SPINT4Q6UDR6 99 aa8.61□□□□□ -1.03
CD40-201ENST00000372276 R4GN34 69 aa8.58□□□□□ -1.04
CD40-201ENST00000372276 MUC17Q685J3 4493 aa8.54□□□□□ -1.04
CD40-201ENST00000372276 CRIPTQ9P021 101 aa8.54□□□□□ -1.04
CD40-201ENST00000372276 KRTAP4-1Q9BYQ7 146 aa8.53□□□□□ -1.04
CD40-201ENST00000372276 KRTAP19-2Q3LHN2 52 aa8.45□□□□□ -1.06
CD40-201ENST00000372276 RNF213Q63HN8 5207 aa8.39□□□□□ -1.07
CD40-201ENST00000372276 MUC2Q02817 5179 aa8.3□□□□□ -1.08
CD40-201ENST00000372276 C10orf95Q9H7T3 257 aa8.27□□□□□ -1.09
CD40-201ENST00000372276 LORP23490 312 aaPredicted RBP8.26□□□□□ -1.09
CD40-201ENST00000372276 FLGP20930 4061 aaPredicted RBP8.23□□□□□ -1.09
CD40-201ENST00000372276 CAMK2N1Q7Z7J9 78 aa8.12□□□□□ -1.11
CD40-201ENST00000372276 PP632Q6XCG6 107 aa8.07□□□□□ -1.12
CD40-201ENST00000372276 FAT4Q6V0I7 4981 aa8.03□□□□□ -1.12
CD40-201ENST00000372276 LCE2CQ5TA81 110 aa8□□□□□ -1.13
CD40-201ENST00000372276 KRTAP15-1Q3LI76 137 aa7.98□□□□□ -1.13
CD40-201ENST00000372276 LCE2AQ5TA79 106 aaPredicted RBP7.95□□□□□ -1.14
CD40-201ENST00000372276 KRTAP23-1A1A580 65 aa7.92□□□□□ -1.14
CD40-201ENST00000372276 SPRR2GQ9BYE4 73 aa7.9□□□□□ -1.14
CD40-201ENST00000372276 M0R2T5 61 aa7.87□□□□□ -1.15
CD40-201ENST00000372276 TNP1P09430 55 aa7.87□□□□□ -1.15
CD40-201ENST00000372276 PLAC4Q8WY50 150 aa7.85□□□□□ -1.15
CD40-201ENST00000372276 MT1HP80294 61 aa7.82□□□□□ -1.16
CD40-201ENST00000372276 H3BS24 57 aa7.77□□□□□ -1.17
CD40-201ENST00000372276 KRTAP19-1Q8IUB9 90 aa7.74□□□□□ -1.17
CD40-201ENST00000372276 KRTAP10-10P60014 251 aa7.68□□□□□ -1.18
CD40-201ENST00000372276 MT2AP02795 61 aa7.67□□□□□ -1.18
CD40-201ENST00000372276 NDUFAF8A1L188 74 aa7.63□□□□□ -1.19
CD40-201ENST00000372276 KRTAP9-8Q9BYQ0 159 aa7.62□□□□□ -1.19
CD40-201ENST00000372276 MT1FP04733 61 aa7.61□□□□□ -1.19
CD40-201ENST00000372276 KRTAP19-8Q3LI54 63 aa7.6□□□□□ -1.19
CD40-201ENST00000372276 LUZP6Q538Z0 58 aa7.49□□□□□ -1.21
CD40-201ENST00000372276 KRTAP9-2Q9BYQ4 174 aa7.48□□□□□ -1.21
CD40-201ENST00000372276 LCE2DQ5TA82 110 aaPredicted RBP7.45□□□□□ -1.22
CD40-201ENST00000372276 MT1BP07438 61 aa7.36□□□□□ -1.23
CD40-201ENST00000372276 KRTAP9-3Q9BYQ3 159 aa7.33□□□□□ -1.24
CD40-201ENST00000372276 SPRR5A0A1B0GTR4 108 aa7.31□□□□□ -1.24
CD40-201ENST00000372276 LCE3AQ5TA76 89 aa7.3□□□□□ -1.24
CD40-201ENST00000372276 KRTAP10-5P60370 271 aa7.28□□□□□ -1.24
CD40-201ENST00000372276 PRO2289Q9P1D8 64 aa7.28□□□□□ -1.24
CD40-201ENST00000372276 MT1XP80297 61 aa7.27□□□□□ -1.25
CD40-201ENST00000372276 KRTAP8-1Q8IUC2 63 aa7.27□□□□□ -1.25
CD40-201ENST00000372276 KRTAP9-6A0A140TA67 174 aa7.17□□□□□ -1.26
CD40-201ENST00000372276 KRTAP10-12P60413 245 aa7.16□□□□□ -1.26
CD40-201ENST00000372276 FSIP2Q5CZC0 6907 aa7.13□□□□□ -1.27
CD40-201ENST00000372276 CRCT1Q9UGL9 99 aa7.12□□□□□ -1.27
CD40-201ENST00000372276 LCE2BO14633 110 aa7.09□□□□□ -1.28
CD40-201ENST00000372276 KRTAP12-3P60328 96 aa7.05□□□□□ -1.28
CD40-201ENST00000372276 USH2AO75445 5202 aa7.04□□□□□ -1.28
CD40-201ENST00000372276 A0A0A0MQY5 61 aa7.01□□□□□ -1.29
CD40-201ENST00000372276 KRTAP10-7P60409 375 aaPredicted RBP6.98□□□□□ -1.29
CD40-201ENST00000372276 SSPOA2VEC9 5147 aa6.92□□□□□ -1.3
CD40-201ENST00000372276 KRTAP19-6Q3LI70 58 aa6.81□□□□□ -1.32
CD40-201ENST00000372276 FCGBPQ9Y6R7 5405 aaPredicted RBP6.73□□□□□ -1.33
CD40-201ENST00000372276 KRTAP19-4Q3LI73 84 aa6.73□□□□□ -1.33
CD40-201ENST00000372276 KRTAP19-5Q3LI72 72 aa6.72□□□□□ -1.33
CD40-201ENST00000372276 LCE3CQ5T5A8 94 aa6.64□□□□□ -1.35
CD40-201ENST00000372276 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.61□□□□□ -1.35
CD40-201ENST00000372276 KRTAP4-8A0A0G2JLE6 195 aa6.5□□□□□ -1.37
CD40-201ENST00000372276 KRTAP4-8Q9BYQ9 185 aa6.5□□□□□ -1.37
CD40-201ENST00000372276 KRTAP19-7Q3SYF9 63 aa6.47□□□□□ -1.37
CD40-201ENST00000372276 MACF1Q9UPN3 7388 aaKnown RBP6.46□□□□□ -1.38
CD40-201ENST00000372276 KRTAP9-7A8MTY7 169 aa6.46□□□□□ -1.38
CD40-201ENST00000372276 INE1O15225 51 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms