RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 A0A1B0GU33 70 aa11.46□□□□□ -0.57
UPF3A-201ENST00000351487 H1FX-AS1Q4G0G2 97 aa11.44□□□□□ -0.58
UPF3A-201ENST00000351487 MT1HL1P0DM35 61 aa11.43□□□□□ -0.58
UPF3A-201ENST00000351487 ADM2Q7Z4H4 148 aa11.36□□□□□ -0.59
UPF3A-201ENST00000351487 PRAC1Q96KF2 57 aa11.36□□□□□ -0.59
UPF3A-201ENST00000351487 KRTAP3-3Q9BYR6 98 aa11.33□□□□□ -0.59
UPF3A-201ENST00000351487 KIAA1109Q2LD37 5005 aa11.3□□□□□ -0.6
UPF3A-201ENST00000351487 MYCBP2O75592 4640 aa11.29□□□□□ -0.6
UPF3A-201ENST00000351487 S4R3F8 94 aa11.23□□□□□ -0.61
UPF3A-201ENST00000351487 KRTAP10-6P60371 365 aaPredicted RBP11.2□□□□□ -0.62
UPF3A-201ENST00000351487 TPRXLQ17RH7 258 aa11.18□□□□□ -0.62
UPF3A-201ENST00000351487 KRTAP3-2Q9BYR7 98 aa11.13□□□□□ -0.63
UPF3A-201ENST00000351487 EPPK1P58107 5090 aaKnown RBP11.1□□□□□ -0.63
UPF3A-201ENST00000351487 CSAG1Q6PB30 78 aa11.08□□□□□ -0.64
UPF3A-201ENST00000351487 K7ERS5 55 aa11.06□□□□□ -0.64
UPF3A-201ENST00000351487 KRTAP13-4Q3LI77 160 aa11.03□□□□□ -0.64
UPF3A-201ENST00000351487 LINC01554Q52M75 96 aa10.99□□□□□ -0.65
UPF3A-201ENST00000351487 LRP2P98164 4655 aa10.98□□□□□ -0.65
UPF3A-201ENST00000351487 P0C880 135 aa10.96□□□□□ -0.66
UPF3A-201ENST00000351487 LPAP08519 4548 aa10.93□□□□□ -0.66
UPF3A-201ENST00000351487 KRTAP4-5Q9BYR2 181 aa10.92□□□□□ -0.66
UPF3A-201ENST00000351487 A0A0D9SG42 100 aa10.85□□□□□ -0.67
UPF3A-201ENST00000351487 KRTAP25-1Q3LHN0 102 aa10.85□□□□□ -0.67
UPF3A-201ENST00000351487 ROMO1P60602 79 aa10.79□□□□□ -0.68
UPF3A-201ENST00000351487 ABCA13Q86UQ4 5058 aa10.79□□□□□ -0.68
UPF3A-201ENST00000351487 SEC61BP60468 96 aaKnown RBP10.73□□□□□ -0.69
UPF3A-201ENST00000351487 M0QZ58 72 aa10.68□□□□□ -0.7
UPF3A-201ENST00000351487 BIRC6Q9NR09 4857 aa10.68□□□□□ -0.7
UPF3A-201ENST00000351487 KRTAP12-2P59991 146 aa10.65□□□□□ -0.7
UPF3A-201ENST00000351487 KRTAP12-1P59990 96 aa10.62□□□□□ -0.71
UPF3A-201ENST00000351487 CRIPTQ9P021 101 aa10.61□□□□□ -0.71
UPF3A-201ENST00000351487 J3QL48 77 aa10.6□□□□□ -0.71
UPF3A-201ENST00000351487 MUC17Q685J3 4493 aa10.58□□□□□ -0.72
UPF3A-201ENST00000351487 KRTAP4-1Q9BYQ7 146 aa10.54□□□□□ -0.72
UPF3A-201ENST00000351487 SPINT4Q6UDR6 99 aa10.52□□□□□ -0.73
UPF3A-201ENST00000351487 HERC2O95714 4834 aa10.5□□□□□ -0.73
UPF3A-201ENST00000351487 KRTAP19-2Q3LHN2 52 aa10.42□□□□□ -0.74
UPF3A-201ENST00000351487 R4GN34 69 aa10.39□□□□□ -0.75
UPF3A-201ENST00000351487 C10orf95Q9H7T3 257 aa10.33□□□□□ -0.76
UPF3A-201ENST00000351487 LORP23490 312 aaPredicted RBP10.27□□□□□ -0.76
UPF3A-201ENST00000351487 PCLOQ9Y6V0 5065 aa10.25□□□□□ -0.77
UPF3A-201ENST00000351487 FLGP20930 4061 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-201ENST00000351487 MUC2Q02817 5179 aa9.96□□□□□ -0.81
UPF3A-201ENST00000351487 HERC1Q15751 4861 aa9.96□□□□□ -0.81
UPF3A-201ENST00000351487 HMCN2Q8NDA2 5059 aa9.91□□□□□ -0.82
UPF3A-201ENST00000351487 KRTAP15-1Q3LI76 137 aa9.86□□□□□ -0.83
UPF3A-201ENST00000351487 CAMK2N1Q7Z7J9 78 aa9.83□□□□□ -0.84
UPF3A-201ENST00000351487 LCE2CQ5TA81 110 aa9.82□□□□□ -0.84
UPF3A-201ENST00000351487 H3BS24 57 aa9.7□□□□□ -0.86
UPF3A-201ENST00000351487 PP632Q6XCG6 107 aa9.67□□□□□ -0.86
UPF3A-201ENST00000351487 SPRR2GQ9BYE4 73 aa9.59□□□□□ -0.87
UPF3A-201ENST00000351487 MT1HP80294 61 aa9.55□□□□□ -0.88
UPF3A-201ENST00000351487 FAT4Q6V0I7 4981 aa9.55□□□□□ -0.88
UPF3A-201ENST00000351487 KRTAP19-1Q8IUB9 90 aa9.51□□□□□ -0.89
UPF3A-201ENST00000351487 PLAC4Q8WY50 150 aa9.51□□□□□ -0.89
UPF3A-201ENST00000351487 M0R2T5 61 aa9.5□□□□□ -0.89
UPF3A-201ENST00000351487 TNP1P09430 55 aa9.49□□□□□ -0.89
UPF3A-201ENST00000351487 NDUFAF8A1L188 74 aa9.47□□□□□ -0.89
UPF3A-201ENST00000351487 KRTAP23-1A1A580 65 aa9.44□□□□□ -0.9
UPF3A-201ENST00000351487 RNF213Q63HN8 5207 aa9.42□□□□□ -0.9
UPF3A-201ENST00000351487 UBR4Q5T4S7 5183 aa9.38□□□□□ -0.91
UPF3A-201ENST00000351487 MT2AP02795 61 aa9.37□□□□□ -0.91
UPF3A-201ENST00000351487 MT1FP04733 61 aa9.36□□□□□ -0.91
UPF3A-201ENST00000351487 KRTAP9-8Q9BYQ0 159 aa9.33□□□□□ -0.92
UPF3A-201ENST00000351487 KRTAP10-10P60014 251 aa9.3□□□□□ -0.92
UPF3A-201ENST00000351487 KRTAP19-8Q3LI54 63 aa9.2□□□□□ -0.94
UPF3A-201ENST00000351487 MT1BP07438 61 aa9.05□□□□□ -0.96
UPF3A-201ENST00000351487 LUZP6Q538Z0 58 aa9.01□□□□□ -0.97
UPF3A-201ENST00000351487 LCE3AQ5TA76 89 aa8.99□□□□□ -0.97
UPF3A-201ENST00000351487 SPRR5A0A1B0GTR4 108 aa8.97□□□□□ -0.97
UPF3A-201ENST00000351487 KRTAP9-3Q9BYQ3 159 aa8.95□□□□□ -0.98
UPF3A-201ENST00000351487 KRTAP10-5P60370 271 aa8.95□□□□□ -0.98
UPF3A-201ENST00000351487 MT1XP80297 61 aa8.94□□□□□ -0.98
UPF3A-201ENST00000351487 KRTAP8-1Q8IUC2 63 aa8.84□□□□□ -0.99
UPF3A-201ENST00000351487 KRTAP10-12P60413 245 aa8.72□□□□□ -1.01
UPF3A-201ENST00000351487 PRO2289Q9P1D8 64 aa8.65□□□□□ -1.02
UPF3A-201ENST00000351487 KRTAP10-7P60409 375 aaPredicted RBP8.64□□□□□ -1.03
UPF3A-201ENST00000351487 KRTAP12-3P60328 96 aa8.58□□□□□ -1.04
UPF3A-201ENST00000351487 LCE2BO14633 110 aa8.58□□□□□ -1.04
UPF3A-201ENST00000351487 LCE2AQ5TA79 106 aaPredicted RBP8.57□□□□□ -1.04
UPF3A-201ENST00000351487 A0A0A0MQY5 61 aa8.44□□□□□ -1.06
UPF3A-201ENST00000351487 KRTAP19-5Q3LI72 72 aa8.26□□□□□ -1.09
UPF3A-201ENST00000351487 USH2AO75445 5202 aa8.19□□□□□ -1.1
UPF3A-201ENST00000351487 KRTAP4-8A0A0G2JLE6 195 aa8.1□□□□□ -1.11
UPF3A-201ENST00000351487 KRTAP4-8Q9BYQ9 185 aa8.1□□□□□ -1.11
UPF3A-201ENST00000351487 LCE3CQ5T5A8 94 aa8.08□□□□□ -1.12
UPF3A-201ENST00000351487 KMT2DO14686 5537 aa7.99□□□□□ -1.13
UPF3A-201ENST00000351487 KRTAP19-7Q3SYF9 63 aa7.98□□□□□ -1.13
UPF3A-201ENST00000351487 SSPOA2VEC9 5147 aa7.85□□□□□ -1.15
UPF3A-201ENST00000351487 KRTAP19-4Q3LI73 84 aa7.83□□□□□ -1.16
UPF3A-201ENST00000351487 KRTAP19-6Q3LI70 58 aa7.81□□□□□ -1.16
UPF3A-201ENST00000351487 LCE2DQ5TA82 110 aaPredicted RBP7.8□□□□□ -1.16
UPF3A-201ENST00000351487 FSIP2Q5CZC0 6907 aa7.8□□□□□ -1.16
UPF3A-201ENST00000351487 MT1EP04732 61 aa7.76□□□□□ -1.17
UPF3A-201ENST00000351487 KRTAP9-6A8MVA2 160 aa7.75□□□□□ -1.17
UPF3A-201ENST00000351487 INE1O15225 51 aa7.74□□□□□ -1.17
UPF3A-201ENST00000351487 MT1LQ93083 61 aa7.73□□□□□ -1.17
UPF3A-201ENST00000351487 KRTAP9-2Q9BYQ4 174 aa7.67□□□□□ -1.18
UPF3A-201ENST00000351487 KRTAP4-7Q9BYR0 210 aa7.67□□□□□ -1.18
UPF3A-201ENST00000351487 KRTAP2-3P0C7H8 128 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms