RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 SEC61GP60059 68 aa8.04□□□□□ -1.12
UPF3B-202ENST00000345865 RPL37P61927 97 aaKnown RBP8.04□□□□□ -1.12
UPF3B-202ENST00000345865 LPAP08519 4548 aa7.99□□□□□ -1.13
UPF3B-202ENST00000345865 H0YAA0 97 aa7.96□□□□□ -1.14
UPF3B-202ENST00000345865 LRP2P98164 4655 aa7.93□□□□□ -1.14
UPF3B-202ENST00000345865 KRTAP3-3Q9BYR6 98 aa7.91□□□□□ -1.14
UPF3B-202ENST00000345865 A0A1B0GU33 70 aa7.91□□□□□ -1.14
UPF3B-202ENST00000345865 ADM2Q7Z4H4 148 aa7.9□□□□□ -1.14
UPF3B-202ENST00000345865 ABCA13Q86UQ4 5058 aa7.9□□□□□ -1.15
UPF3B-202ENST00000345865 H1FX-AS1Q4G0G2 97 aa7.89□□□□□ -1.15
UPF3B-202ENST00000345865 RBM12B-AS1Q9P1G2 102 aa7.89□□□□□ -1.15
UPF3B-202ENST00000345865 PRAC1Q96KF2 57 aa7.87□□□□□ -1.15
UPF3B-202ENST00000345865 KRTAP4-5Q9BYR2 181 aa7.83□□□□□ -1.16
UPF3B-202ENST00000345865 KRTAP10-6P60371 365 aaPredicted RBP7.79□□□□□ -1.16
UPF3B-202ENST00000345865 S4R3F8 94 aa7.78□□□□□ -1.16
UPF3B-202ENST00000345865 TPRXLQ17RH7 258 aa7.77□□□□□ -1.17
UPF3B-202ENST00000345865 KRTAP3-2Q9BYR7 98 aa7.75□□□□□ -1.17
UPF3B-202ENST00000345865 KRTAP13-4Q3LI77 160 aa7.7□□□□□ -1.18
UPF3B-202ENST00000345865 P0C880 135 aa7.66□□□□□ -1.18
UPF3B-202ENST00000345865 CSAG1Q6PB30 78 aa7.63□□□□□ -1.19
UPF3B-202ENST00000345865 MUC17Q685J3 4493 aa7.6□□□□□ -1.19
UPF3B-202ENST00000345865 HERC2O95714 4834 aa7.6□□□□□ -1.19
UPF3B-202ENST00000345865 A0A0D9SG42 100 aa7.57□□□□□ -1.2
UPF3B-202ENST00000345865 K7ERS5 55 aa7.53□□□□□ -1.2
UPF3B-202ENST00000345865 LINC01554Q52M75 96 aa7.49□□□□□ -1.21
UPF3B-202ENST00000345865 KRTAP4-1Q9BYQ7 146 aa7.48□□□□□ -1.21
UPF3B-202ENST00000345865 J3QL48 77 aa7.44□□□□□ -1.22
UPF3B-202ENST00000345865 SEC61BP60468 96 aaKnown RBP7.44□□□□□ -1.22
UPF3B-202ENST00000345865 KRTAP25-1Q3LHN0 102 aa7.44□□□□□ -1.22
UPF3B-202ENST00000345865 CRIPTQ9P021 101 aa7.44□□□□□ -1.22
UPF3B-202ENST00000345865 KRTAP12-2P59991 146 aa7.42□□□□□ -1.22
UPF3B-202ENST00000345865 ROMO1P60602 79 aa7.4□□□□□ -1.22
UPF3B-202ENST00000345865 BIRC6Q9NR09 4857 aa7.4□□□□□ -1.22
UPF3B-202ENST00000345865 MUC2Q02817 5179 aa7.38□□□□□ -1.23
UPF3B-202ENST00000345865 KRTAP12-1P59990 96 aa7.36□□□□□ -1.23
UPF3B-202ENST00000345865 M0QZ58 72 aa7.34□□□□□ -1.23
UPF3B-202ENST00000345865 KRTAP19-2Q3LHN2 52 aa7.33□□□□□ -1.24
UPF3B-202ENST00000345865 SPINT4Q6UDR6 99 aa7.32□□□□□ -1.24
UPF3B-202ENST00000345865 HERC1Q15751 4861 aa7.28□□□□□ -1.24
UPF3B-202ENST00000345865 LORP23490 312 aaPredicted RBP7.26□□□□□ -1.25
UPF3B-202ENST00000345865 PCLOQ9Y6V0 5065 aa7.25□□□□□ -1.25
UPF3B-202ENST00000345865 R4GN34 69 aa7.21□□□□□ -1.26
UPF3B-202ENST00000345865 FLGP20930 4061 aaPredicted RBP7.2□□□□□ -1.26
UPF3B-202ENST00000345865 C10orf95Q9H7T3 257 aa7.2□□□□□ -1.26
UPF3B-202ENST00000345865 HMCN2Q8NDA2 5059 aa7.19□□□□□ -1.26
UPF3B-202ENST00000345865 FAT4Q6V0I7 4981 aa7.02□□□□□ -1.29
UPF3B-202ENST00000345865 LCE2CQ5TA81 110 aa6.94□□□□□ -1.3
UPF3B-202ENST00000345865 RNF213Q63HN8 5207 aa6.89□□□□□ -1.31
UPF3B-202ENST00000345865 UBR4Q5T4S7 5183 aa6.88□□□□□ -1.31
UPF3B-202ENST00000345865 CAMK2N1Q7Z7J9 78 aa6.81□□□□□ -1.32
UPF3B-202ENST00000345865 KRTAP15-1Q3LI76 137 aa6.77□□□□□ -1.33
UPF3B-202ENST00000345865 MT1HP80294 61 aa6.73□□□□□ -1.33
UPF3B-202ENST00000345865 M0R2T5 61 aa6.68□□□□□ -1.34
UPF3B-202ENST00000345865 KRTAP19-1Q8IUB9 90 aa6.68□□□□□ -1.34
UPF3B-202ENST00000345865 SPRR2GQ9BYE4 73 aa6.67□□□□□ -1.34
UPF3B-202ENST00000345865 MT1FP04733 61 aa6.6□□□□□ -1.35
UPF3B-202ENST00000345865 H3BS24 57 aa6.59□□□□□ -1.35
UPF3B-202ENST00000345865 MT2AP02795 61 aa6.59□□□□□ -1.35
UPF3B-202ENST00000345865 KRTAP9-8Q9BYQ0 159 aa6.58□□□□□ -1.36
UPF3B-202ENST00000345865 PP632Q6XCG6 107 aa6.57□□□□□ -1.36
UPF3B-202ENST00000345865 TNP1P09430 55 aa6.54□□□□□ -1.36
UPF3B-202ENST00000345865 KRTAP10-10P60014 251 aa6.54□□□□□ -1.36
UPF3B-202ENST00000345865 PLAC4Q8WY50 150 aa6.53□□□□□ -1.36
UPF3B-202ENST00000345865 NDUFAF8A1L188 74 aa6.51□□□□□ -1.37
UPF3B-202ENST00000345865 KRTAP23-1A1A580 65 aa6.41□□□□□ -1.38
UPF3B-202ENST00000345865 KRTAP19-8Q3LI54 63 aa6.39□□□□□ -1.39
UPF3B-202ENST00000345865 MT1BP07438 61 aa6.35□□□□□ -1.39
UPF3B-202ENST00000345865 KRTAP9-3Q9BYQ3 159 aa6.3□□□□□ -1.4
UPF3B-202ENST00000345865 LCE3AQ5TA76 89 aa6.28□□□□□ -1.4
UPF3B-202ENST00000345865 KRTAP10-5P60370 271 aa6.27□□□□□ -1.41
UPF3B-202ENST00000345865 MT1XP80297 61 aa6.27□□□□□ -1.41
UPF3B-202ENST00000345865 SPRR5A0A1B0GTR4 108 aa6.15□□□□□ -1.43
UPF3B-202ENST00000345865 LUZP6Q538Z0 58 aa6.12□□□□□ -1.43
UPF3B-202ENST00000345865 KRTAP8-1Q8IUC2 63 aa6.1□□□□□ -1.43
UPF3B-202ENST00000345865 USH2AO75445 5202 aa6.1□□□□□ -1.43
UPF3B-202ENST00000345865 KRTAP10-7P60409 375 aaPredicted RBP6.09□□□□□ -1.43
UPF3B-202ENST00000345865 LCE2BO14633 110 aa6.09□□□□□ -1.43
UPF3B-202ENST00000345865 LCE2AQ5TA79 106 aaPredicted RBP6.07□□□□□ -1.44
UPF3B-202ENST00000345865 KRTAP10-12P60413 245 aa6.05□□□□□ -1.44
UPF3B-202ENST00000345865 KRTAP12-3P60328 96 aa5.96□□□□□ -1.46
UPF3B-202ENST00000345865 PRO2289Q9P1D8 64 aa5.96□□□□□ -1.46
UPF3B-202ENST00000345865 KMT2DO14686 5537 aa5.94□□□□□ -1.46
UPF3B-202ENST00000345865 KRTAP19-5Q3LI72 72 aa5.79□□□□□ -1.48
UPF3B-202ENST00000345865 KRTAP4-8A0A0G2JLE6 195 aa5.77□□□□□ -1.49
UPF3B-202ENST00000345865 KRTAP4-8Q9BYQ9 185 aa5.77□□□□□ -1.49
UPF3B-202ENST00000345865 SSPOA2VEC9 5147 aa5.68□□□□□ -1.5
UPF3B-202ENST00000345865 A0A0A0MQY5 61 aa5.68□□□□□ -1.5
UPF3B-202ENST00000345865 LCE3CQ5T5A8 94 aa5.6□□□□□ -1.51
UPF3B-202ENST00000345865 KRTAP19-7Q3SYF9 63 aa5.6□□□□□ -1.51
UPF3B-202ENST00000345865 FSIP2Q5CZC0 6907 aa5.57□□□□□ -1.52
UPF3B-202ENST00000345865 KRTAP19-6Q3LI70 58 aa5.47□□□□□ -1.53
UPF3B-202ENST00000345865 KRTAP9-6A8MVA2 160 aa5.46□□□□□ -1.54
UPF3B-202ENST00000345865 KRTAP4-7Q9BYR0 210 aa5.46□□□□□ -1.54
UPF3B-202ENST00000345865 LCE2DQ5TA82 110 aaPredicted RBP5.43□□□□□ -1.54
UPF3B-202ENST00000345865 MT1EP04732 61 aa5.42□□□□□ -1.54
UPF3B-202ENST00000345865 MT1LQ93083 61 aa5.4□□□□□ -1.55
UPF3B-202ENST00000345865 FCGBPQ9Y6R7 5405 aaPredicted RBP5.33□□□□□ -1.56
UPF3B-202ENST00000345865 KRTAP19-4Q3LI73 84 aa5.27□□□□□ -1.57
UPF3B-202ENST00000345865 MUC12Q9UKN1 5478 aa5.27□□□□□ -1.57
UPF3B-202ENST00000345865 INE1O15225 51 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms