RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PRAC1Q96KF2 57 aa7.12□□□□□ -1.27
CLK3-201ENST00000345005 MIR22HGQ0VDD5 57 aa7.1□□□□□ -1.27
CLK3-201ENST00000345005 LRP1Q07954 4544 aaKnown RBP7.07□□□□□ -1.28
CLK3-201ENST00000345005 TNXBP22105 4242 aa7.06□□□□□ -1.28
CLK3-201ENST00000345005 IGKV2D-30A0A075B6S6 120 aa7.06□□□□□ -1.28
CLK3-201ENST00000345005 FAT3Q8TDW7 4589 aa7.04□□□□□ -1.28
CLK3-201ENST00000345005 MT1HL1P0DM35 61 aa7.04□□□□□ -1.28
CLK3-201ENST00000345005 DMBT1Q9UGM3 2413 aaPredicted RBP7.03□□□□□ -1.28
CLK3-201ENST00000345005 ADM2Q7Z4H4 148 aa7.03□□□□□ -1.28
CLK3-201ENST00000345005 C9orf92A6NGG3 77 aa7.01□□□□□ -1.29
CLK3-201ENST00000345005 C20orf166-AS1Q96NR2 134 aa6.98□□□□□ -1.29
CLK3-201ENST00000345005 A8MUU9 505 aa6.97□□□□□ -1.29
CLK3-201ENST00000345005 CSAG1Q6PB30 78 aa6.97□□□□□ -1.29
CLK3-201ENST00000345005 HMCN2Q8NDA2 5059 aa6.86□□□□□ -1.31
CLK3-201ENST00000345005 KRTAP25-1Q3LHN0 102 aa6.85□□□□□ -1.31
CLK3-201ENST00000345005 J3QL48 77 aa6.84□□□□□ -1.31
CLK3-201ENST00000345005 ROMO1P60602 79 aa6.83□□□□□ -1.32
CLK3-201ENST00000345005 XP32Q5T750 250 aa6.82□□□□□ -1.32
CLK3-201ENST00000345005 RPL37P61927 97 aaKnown RBP6.81□□□□□ -1.32
CLK3-201ENST00000345005 TPRXLQ17RH7 258 aa6.79□□□□□ -1.32
CLK3-201ENST00000345005 A0A1B0GU33 70 aa6.76□□□□□ -1.33
CLK3-201ENST00000345005 K7ERS5 55 aa6.74□□□□□ -1.33
CLK3-201ENST00000345005 UBR4Q5T4S7 5183 aa6.73□□□□□ -1.33
CLK3-201ENST00000345005 H1FX-AS1Q4G0G2 97 aa6.72□□□□□ -1.33
CLK3-201ENST00000345005 H0YAA0 97 aa6.71□□□□□ -1.34
CLK3-201ENST00000345005 COX6B2Q6YFQ2 88 aa6.64□□□□□ -1.35
CLK3-201ENST00000345005 LRP2P98164 4655 aa6.64□□□□□ -1.35
CLK3-201ENST00000345005 KRTAP3-1Q9BYR8 98 aa6.64□□□□□ -1.35
CLK3-201ENST00000345005 SEC61BP60468 96 aaKnown RBP6.57□□□□□ -1.36
CLK3-201ENST00000345005 LPAP08519 4548 aa6.56□□□□□ -1.36
CLK3-201ENST00000345005 RNF213Q63HN8 5207 aa6.54□□□□□ -1.36
CLK3-201ENST00000345005 P0C880 135 aa6.51□□□□□ -1.37
CLK3-201ENST00000345005 A0A0A0MQY5 61 aa6.45□□□□□ -1.38
CLK3-201ENST00000345005 S4R3F8 94 aa6.4□□□□□ -1.38
CLK3-201ENST00000345005 KRTAP10-6P60371 365 aaPredicted RBP6.39□□□□□ -1.39
CLK3-201ENST00000345005 SPINT4Q6UDR6 99 aa6.37□□□□□ -1.39
CLK3-201ENST00000345005 KRTAP4-1Q9BYQ7 146 aa6.37□□□□□ -1.39
CLK3-201ENST00000345005 MUC17Q685J3 4493 aa6.35□□□□□ -1.39
CLK3-201ENST00000345005 KRTAP15-1Q3LI76 137 aa6.35□□□□□ -1.39
CLK3-201ENST00000345005 MUC2Q02817 5179 aa6.34□□□□□ -1.39
CLK3-201ENST00000345005 CRIPTQ9P021 101 aa6.28□□□□□ -1.4
CLK3-201ENST00000345005 A0A0D9SG42 100 aa6.27□□□□□ -1.41
CLK3-201ENST00000345005 KRTAP13-4Q3LI77 160 aa6.27□□□□□ -1.41
CLK3-201ENST00000345005 LCE2BO14633 110 aa6.24□□□□□ -1.41
CLK3-201ENST00000345005 NDUFAF8A1L188 74 aa6.23□□□□□ -1.41
CLK3-201ENST00000345005 M0QZ58 72 aa6.23□□□□□ -1.41
CLK3-201ENST00000345005 KRTAP19-2Q3LHN2 52 aa6.22□□□□□ -1.41
CLK3-201ENST00000345005 FAT4Q6V0I7 4981 aa6.15□□□□□ -1.42
CLK3-201ENST00000345005 KRTAP12-1P59990 96 aa6.12□□□□□ -1.43
CLK3-201ENST00000345005 KRTAP12-2P59991 146 aa6.12□□□□□ -1.43
CLK3-201ENST00000345005 FLGP20930 4061 aaPredicted RBP6.07□□□□□ -1.44
CLK3-201ENST00000345005 C10orf95Q9H7T3 257 aa6.06□□□□□ -1.44
CLK3-201ENST00000345005 LCE2CQ5TA81 110 aa6.04□□□□□ -1.44
CLK3-201ENST00000345005 LCE2AQ5TA79 106 aaPredicted RBP6□□□□□ -1.45
CLK3-201ENST00000345005 LUZP6Q538Z0 58 aa5.95□□□□□ -1.46
CLK3-201ENST00000345005 R4GN34 69 aa5.93□□□□□ -1.46
CLK3-201ENST00000345005 MT1HP80294 61 aa5.92□□□□□ -1.46
CLK3-201ENST00000345005 M0R2T5 61 aa5.9□□□□□ -1.46
CLK3-201ENST00000345005 LORP23490 312 aaPredicted RBP5.85□□□□□ -1.47
CLK3-201ENST00000345005 PLAC4Q8WY50 150 aa5.85□□□□□ -1.47
CLK3-201ENST00000345005 PP632Q6XCG6 107 aa5.83□□□□□ -1.48
CLK3-201ENST00000345005 KRTAP9-2Q9BYQ4 174 aa5.83□□□□□ -1.48
CLK3-201ENST00000345005 KRTAP9-8Q9BYQ0 159 aa5.71□□□□□ -1.49
CLK3-201ENST00000345005 MT2AP02795 61 aa5.71□□□□□ -1.5
CLK3-201ENST00000345005 KRTAP10-10P60014 251 aa5.69□□□□□ -1.5
CLK3-201ENST00000345005 MT1FP04733 61 aa5.67□□□□□ -1.5
CLK3-201ENST00000345005 SPRR2GQ9BYE4 73 aa5.67□□□□□ -1.5
CLK3-201ENST00000345005 FSIP2Q5CZC0 6907 aa5.66□□□□□ -1.5
CLK3-201ENST00000345005 CAMK2N1Q7Z7J9 78 aa5.65□□□□□ -1.5
CLK3-201ENST00000345005 KRTAP23-1A1A580 65 aa5.64□□□□□ -1.51
CLK3-201ENST00000345005 KRTAP9-6A0A140TA67 174 aa5.62□□□□□ -1.51
CLK3-201ENST00000345005 KRTAP19-1Q8IUB9 90 aa5.62□□□□□ -1.51
CLK3-201ENST00000345005 TNP1P09430 55 aa5.53□□□□□ -1.52
CLK3-201ENST00000345005 KRTAP9-3Q9BYQ3 159 aa5.51□□□□□ -1.53
CLK3-201ENST00000345005 KRTAP19-8Q3LI54 63 aa5.5□□□□□ -1.53
CLK3-201ENST00000345005 CRCT1Q9UGL9 99 aa5.5□□□□□ -1.53
CLK3-201ENST00000345005 SPRR5A0A1B0GTR4 108 aa5.48□□□□□ -1.53
CLK3-201ENST00000345005 USH2AO75445 5202 aa5.41□□□□□ -1.54
CLK3-201ENST00000345005 PRO2289Q9P1D8 64 aa5.4□□□□□ -1.54
CLK3-201ENST00000345005 MT1BP07438 61 aa5.39□□□□□ -1.55
CLK3-201ENST00000345005 SSPOA2VEC9 5147 aa5.37□□□□□ -1.55
CLK3-201ENST00000345005 INE1O15225 51 aa5.32□□□□□ -1.56
CLK3-201ENST00000345005 MT1XP80297 61 aa5.25□□□□□ -1.57
CLK3-201ENST00000345005 KRTAP10-5P60370 271 aa5.24□□□□□ -1.57
CLK3-201ENST00000345005 FCGBPQ9Y6R7 5405 aaPredicted RBP5.22□□□□□ -1.57
CLK3-201ENST00000345005 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.13□□□□□ -1.59
CLK3-201ENST00000345005 KRTAP9-7A8MTY7 169 aa5.06□□□□□ -1.6
CLK3-201ENST00000345005 MACF1Q9UPN3 7388 aaKnown RBP5.06□□□□□ -1.6
CLK3-201ENST00000345005 LCE3AQ5TA76 89 aa5.05□□□□□ -1.6
CLK3-201ENST00000345005 KRTAP8-1Q8IUC2 63 aa5.05□□□□□ -1.6
CLK3-201ENST00000345005 KRTAP19-6Q3LI70 58 aa5.04□□□□□ -1.6
CLK3-201ENST00000345005 SYNE2Q8WXH0 6885 aaKnown RBP5.04□□□□□ -1.6
CLK3-201ENST00000345005 KRTAP10-7P60409 375 aaPredicted RBP5.04□□□□□ -1.6
CLK3-201ENST00000345005 KRTAP10-12P60413 245 aa5.02□□□□□ -1.61
CLK3-201ENST00000345005 KRTAP12-3P60328 96 aa4.88□□□□□ -1.63
CLK3-201ENST00000345005 LOC100996750A0A140TA64 210 aa4.86□□□□□ -1.63
CLK3-201ENST00000345005 KRTAP4-6Q9BYQ5 205 aa4.86□□□□□ -1.63
CLK3-201ENST00000345005 KRTAP4-8A0A0G2JLE6 195 aa4.81□□□□□ -1.64
CLK3-201ENST00000345005 KRTAP4-8Q9BYQ9 185 aa4.81□□□□□ -1.64
CLK3-201ENST00000345005 KRTAP6-3Q3LI67 103 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms