RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 A6NN06 94 aa8□□□□□ -1.13
TPM3-208ENST00000341485 KRTAP3-1Q9BYR8 98 aa7.98□□□□□ -1.13
TPM3-208ENST00000341485 SPATA8Q6RVD6 105 aa7.93□□□□□ -1.14
TPM3-208ENST00000341485 UQCR11O14957 56 aa7.91□□□□□ -1.14
TPM3-208ENST00000341485 XP32Q5T750 250 aa7.9□□□□□ -1.14
TPM3-208ENST00000341485 KTN1-AS1Q86SY8 53 aa7.9□□□□□ -1.14
TPM3-208ENST00000341485 MIR22HGQ0VDD5 57 aa7.89□□□□□ -1.15
TPM3-208ENST00000341485 RPL37P61927 97 aaKnown RBP7.87□□□□□ -1.15
TPM3-208ENST00000341485 TPRXLQ17RH7 258 aa7.87□□□□□ -1.15
TPM3-208ENST00000341485 SEC61GP60059 68 aa7.85□□□□□ -1.15
TPM3-208ENST00000341485 COX6B2Q6YFQ2 88 aa7.84□□□□□ -1.15
TPM3-208ENST00000341485 PCLOQ9Y6V0 5065 aa7.71□□□□□ -1.18
TPM3-208ENST00000341485 H0YAA0 97 aa7.71□□□□□ -1.18
TPM3-208ENST00000341485 A0A1B0GU33 70 aa7.69□□□□□ -1.18
TPM3-208ENST00000341485 LPAP08519 4548 aa7.69□□□□□ -1.18
TPM3-208ENST00000341485 H1FX-AS1Q4G0G2 97 aa7.67□□□□□ -1.18
TPM3-208ENST00000341485 RBM12B-AS1Q9P1G2 102 aa7.66□□□□□ -1.18
TPM3-208ENST00000341485 SEC61BP60468 96 aaKnown RBP7.63□□□□□ -1.19
TPM3-208ENST00000341485 ADM2Q7Z4H4 148 aa7.63□□□□□ -1.19
TPM3-208ENST00000341485 LRP2P98164 4655 aa7.62□□□□□ -1.19
TPM3-208ENST00000341485 PRAC1Q96KF2 57 aa7.62□□□□□ -1.19
TPM3-208ENST00000341485 S4R3F8 94 aa7.57□□□□□ -1.2
TPM3-208ENST00000341485 LCE2BO14633 110 aa7.54□□□□□ -1.2
TPM3-208ENST00000341485 KRTAP10-6P60371 365 aaPredicted RBP7.54□□□□□ -1.2
TPM3-208ENST00000341485 HERC1Q15751 4861 aa7.5□□□□□ -1.21
TPM3-208ENST00000341485 HMCN2Q8NDA2 5059 aa7.47□□□□□ -1.21
TPM3-208ENST00000341485 MUC17Q685J3 4493 aa7.45□□□□□ -1.22
TPM3-208ENST00000341485 KRTAP13-4Q3LI77 160 aa7.44□□□□□ -1.22
TPM3-208ENST00000341485 KRTAP4-1Q9BYQ7 146 aa7.42□□□□□ -1.22
TPM3-208ENST00000341485 P0C880 135 aa7.4□□□□□ -1.22
TPM3-208ENST00000341485 CSAG1Q6PB30 78 aa7.4□□□□□ -1.22
TPM3-208ENST00000341485 K7ERS5 55 aa7.37□□□□□ -1.23
TPM3-208ENST00000341485 A0A0D9SG42 100 aa7.34□□□□□ -1.23
TPM3-208ENST00000341485 LINC01554Q52M75 96 aa7.29□□□□□ -1.24
TPM3-208ENST00000341485 LCE2CQ5TA81 110 aa7.27□□□□□ -1.25
TPM3-208ENST00000341485 KRTAP25-1Q3LHN0 102 aa7.23□□□□□ -1.25
TPM3-208ENST00000341485 ROMO1P60602 79 aa7.21□□□□□ -1.25
TPM3-208ENST00000341485 KRTAP19-2Q3LHN2 52 aa7.18□□□□□ -1.26
TPM3-208ENST00000341485 KRTAP12-2P59991 146 aa7.17□□□□□ -1.26
TPM3-208ENST00000341485 CRIPTQ9P021 101 aa7.16□□□□□ -1.26
TPM3-208ENST00000341485 M0QZ58 72 aa7.15□□□□□ -1.27
TPM3-208ENST00000341485 LCE2AQ5TA79 106 aaPredicted RBP7.15□□□□□ -1.27
TPM3-208ENST00000341485 KRTAP12-1P59990 96 aa7.14□□□□□ -1.27
TPM3-208ENST00000341485 MUC2Q02817 5179 aa7.14□□□□□ -1.27
TPM3-208ENST00000341485 UBR4Q5T4S7 5183 aa7.11□□□□□ -1.27
TPM3-208ENST00000341485 RNF213Q63HN8 5207 aa7.1□□□□□ -1.27
TPM3-208ENST00000341485 SPINT4Q6UDR6 99 aa7.1□□□□□ -1.27
TPM3-208ENST00000341485 LORP23490 312 aaPredicted RBP6.99□□□□□ -1.29
TPM3-208ENST00000341485 R4GN34 69 aa6.99□□□□□ -1.29
TPM3-208ENST00000341485 FLGP20930 4061 aaPredicted RBP6.96□□□□□ -1.3
TPM3-208ENST00000341485 C10orf95Q9H7T3 257 aa6.96□□□□□ -1.3
TPM3-208ENST00000341485 M0R2T5 61 aa6.92□□□□□ -1.3
TPM3-208ENST00000341485 MT1HP80294 61 aa6.91□□□□□ -1.3
TPM3-208ENST00000341485 FAT4Q6V0I7 4981 aa6.87□□□□□ -1.31
TPM3-208ENST00000341485 H3BS24 57 aa6.74□□□□□ -1.33
TPM3-208ENST00000341485 MT2AP02795 61 aa6.64□□□□□ -1.35
TPM3-208ENST00000341485 KRTAP9-8Q9BYQ0 159 aa6.64□□□□□ -1.35
TPM3-208ENST00000341485 KRTAP10-10P60014 251 aa6.63□□□□□ -1.35
TPM3-208ENST00000341485 CAMK2N1Q7Z7J9 78 aa6.62□□□□□ -1.35
TPM3-208ENST00000341485 MT1FP04733 61 aa6.61□□□□□ -1.35
TPM3-208ENST00000341485 KRTAP15-1Q3LI76 137 aa6.57□□□□□ -1.36
TPM3-208ENST00000341485 SPRR2GQ9BYE4 73 aa6.51□□□□□ -1.37
TPM3-208ENST00000341485 KRTAP19-1Q8IUB9 90 aa6.49□□□□□ -1.37
TPM3-208ENST00000341485 PP632Q6XCG6 107 aa6.43□□□□□ -1.38
TPM3-208ENST00000341485 KRTAP9-3Q9BYQ3 159 aa6.4□□□□□ -1.39
TPM3-208ENST00000341485 PLAC4Q8WY50 150 aa6.38□□□□□ -1.39
TPM3-208ENST00000341485 TNP1P09430 55 aa6.37□□□□□ -1.39
TPM3-208ENST00000341485 KRTAP19-8Q3LI54 63 aa6.34□□□□□ -1.4
TPM3-208ENST00000341485 NDUFAF8A1L188 74 aa6.31□□□□□ -1.4
TPM3-208ENST00000341485 KRTAP23-1A1A580 65 aa6.27□□□□□ -1.41
TPM3-208ENST00000341485 MT1BP07438 61 aa6.26□□□□□ -1.41
TPM3-208ENST00000341485 LCE3AQ5TA76 89 aa6.08□□□□□ -1.44
TPM3-208ENST00000341485 KRTAP10-5P60370 271 aa6.06□□□□□ -1.44
TPM3-208ENST00000341485 MT1XP80297 61 aa6.06□□□□□ -1.44
TPM3-208ENST00000341485 PRO2289Q9P1D8 64 aa6.04□□□□□ -1.44
TPM3-208ENST00000341485 USH2AO75445 5202 aa6.02□□□□□ -1.45
TPM3-208ENST00000341485 A0A0A0MQY5 61 aa5.98□□□□□ -1.45
TPM3-208ENST00000341485 SPRR5A0A1B0GTR4 108 aa5.97□□□□□ -1.45
TPM3-208ENST00000341485 LUZP6Q538Z0 58 aa5.97□□□□□ -1.45
TPM3-208ENST00000341485 KRTAP8-1Q8IUC2 63 aa5.92□□□□□ -1.46
TPM3-208ENST00000341485 KRTAP10-12P60413 245 aa5.88□□□□□ -1.47
TPM3-208ENST00000341485 KRTAP10-7P60409 375 aaPredicted RBP5.87□□□□□ -1.47
TPM3-208ENST00000341485 KRTAP19-6Q3LI70 58 aa5.83□□□□□ -1.48
TPM3-208ENST00000341485 SSPOA2VEC9 5147 aa5.81□□□□□ -1.48
TPM3-208ENST00000341485 KRTAP12-3P60328 96 aa5.78□□□□□ -1.48
TPM3-208ENST00000341485 KRTAP9-2Q9BYQ4 174 aa5.73□□□□□ -1.49
TPM3-208ENST00000341485 FSIP2Q5CZC0 6907 aa5.71□□□□□ -1.5
TPM3-208ENST00000341485 LOC100996750A0A140TA64 210 aa5.63□□□□□ -1.51
TPM3-208ENST00000341485 KRTAP4-6Q9BYQ5 205 aa5.63□□□□□ -1.51
TPM3-208ENST00000341485 KRTAP19-5Q3LI72 72 aa5.6□□□□□ -1.51
TPM3-208ENST00000341485 KRTAP4-8A0A0G2JLE6 195 aa5.6□□□□□ -1.51
TPM3-208ENST00000341485 KRTAP4-8Q9BYQ9 185 aa5.6□□□□□ -1.51
TPM3-208ENST00000341485 CRCT1Q9UGL9 99 aa5.55□□□□□ -1.52
TPM3-208ENST00000341485 FCGBPQ9Y6R7 5405 aaPredicted RBP5.55□□□□□ -1.52
TPM3-208ENST00000341485 KMT2DO14686 5537 aa5.54□□□□□ -1.52
TPM3-208ENST00000341485 LCE3CQ5T5A8 94 aa5.44□□□□□ -1.54
TPM3-208ENST00000341485 KRTAP19-7Q3SYF9 63 aa5.4□□□□□ -1.54
TPM3-208ENST00000341485 KRTAP19-4Q3LI73 84 aa5.37□□□□□ -1.55
TPM3-208ENST00000341485 KRTAP9-6A0A140TA67 174 aa5.33□□□□□ -1.56
TPM3-208ENST00000341485 MT1EP04732 61 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms