RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ANK2Q01484 3957 aa3.79□□□□□ -1.8
HMGB1-203ENST00000341423 KRTAP10-7P60409 375 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-203ENST00000341423 MT1HP80294 61 aa3.76□□□□□ -1.81
HMGB1-203ENST00000341423 ANK3Q12955 4377 aaKnown RBP3.74□□□□□ -1.81
HMGB1-203ENST00000341423 SPRR2DP22532 72 aa3.73□□□□□ -1.81
HMGB1-203ENST00000341423 SPRR5A0A1B0GTR4 108 aa3.69□□□□□ -1.82
HMGB1-203ENST00000341423 KRTAP12-2P59991 146 aa3.68□□□□□ -1.82
HMGB1-203ENST00000341423 KRTAP13-4Q3LI77 160 aa3.67□□□□□ -1.82
HMGB1-203ENST00000341423 BIRC6Q9NR09 4857 aa3.66□□□□□ -1.82
HMGB1-203ENST00000341423 KRTAP9-7A8MTY7 169 aa3.63□□□□□ -1.83
HMGB1-203ENST00000341423 PLECQ15149 4684 aaKnown RBP3.61□□□□□ -1.83
HMGB1-203ENST00000341423 MT2AP02795 61 aa3.6□□□□□ -1.83
HMGB1-203ENST00000341423 KRTAP20-1Q3LI63 56 aa3.6□□□□□ -1.83
HMGB1-203ENST00000341423 LCE2BO14633 110 aa3.59□□□□□ -1.83
HMGB1-203ENST00000341423 ALMS1Q8TCU4 4167 aa3.57□□□□□ -1.84
HMGB1-203ENST00000341423 EPPK1P58107 5090 aaKnown RBP3.57□□□□□ -1.84
HMGB1-203ENST00000341423 DNAH1Q9P2D7 4330 aa3.57□□□□□ -1.84
HMGB1-203ENST00000341423 HERC2O95714 4834 aa3.57□□□□□ -1.84
HMGB1-203ENST00000341423 LCE2CQ5TA81 110 aa3.55□□□□□ -1.84
HMGB1-203ENST00000341423 RYR1P21817 5038 aa3.54□□□□□ -1.84
HMGB1-203ENST00000341423 PCLOQ9Y6V0 5065 aa3.54□□□□□ -1.84
HMGB1-203ENST00000341423 DNAH11Q96DT5 4516 aa3.54□□□□□ -1.84
HMGB1-203ENST00000341423 KRTAP12-3P60328 96 aa3.53□□□□□ -1.84
HMGB1-203ENST00000341423 KRTAP12-4P60329 112 aa3.52□□□□□ -1.85
HMGB1-203ENST00000341423 DNAH6Q9C0G6 4158 aa3.5□□□□□ -1.85
HMGB1-203ENST00000341423 DNAH7Q8WXX0 4024 aa3.5□□□□□ -1.85
HMGB1-203ENST00000341423 NDUFAF8A1L188 74 aa3.5□□□□□ -1.85
HMGB1-203ENST00000341423 KRTAP19-1Q8IUB9 90 aa3.49□□□□□ -1.85
HMGB1-203ENST00000341423 FRAS1Q86XX4 4008 aa3.48□□□□□ -1.85
HMGB1-203ENST00000341423 HUWE1Q7Z6Z7 4374 aaKnown RBP3.48□□□□□ -1.85
HMGB1-203ENST00000341423 LCE2DQ5TA82 110 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-203ENST00000341423 RYR3Q15413 4870 aa3.46□□□□□ -1.86
HMGB1-203ENST00000341423 MT1FP04733 61 aa3.45□□□□□ -1.86
HMGB1-203ENST00000341423 KRTAP4-1Q9BYQ7 146 aa3.44□□□□□ -1.86
HMGB1-203ENST00000341423 DNAH3Q8TD57 4116 aa3.44□□□□□ -1.86
HMGB1-203ENST00000341423 CMYA5Q8N3K9 4069 aa3.44□□□□□ -1.86
HMGB1-203ENST00000341423 KRTAP12-1P59990 96 aa3.43□□□□□ -1.86
HMGB1-203ENST00000341423 GPR98Q8WXG9 6306 aa3.43□□□□□ -1.86
HMGB1-203ENST00000341423 DNAH5Q8TE73 4624 aa3.4□□□□□ -1.87
HMGB1-203ENST00000341423 KRTAP3-1Q9BYR8 98 aa3.39□□□□□ -1.87
HMGB1-203ENST00000341423 VPS13DQ5THJ4 4388 aa3.38□□□□□ -1.87
HMGB1-203ENST00000341423 KMT2AQ03164 3969 aa3.36□□□□□ -1.87
HMGB1-203ENST00000341423 KIAA1109Q2LD37 5005 aa3.36□□□□□ -1.87
HMGB1-203ENST00000341423 KRTAP10-5P60370 271 aa3.35□□□□□ -1.87
HMGB1-203ENST00000341423 KRTAP2-3P0C7H8 128 aa3.34□□□□□ -1.88
HMGB1-203ENST00000341423 KRTAP2-4Q9BYR9 128 aa3.34□□□□□ -1.88
HMGB1-203ENST00000341423 PRKDCP78527 4128 aaKnown RBP3.33□□□□□ -1.88
HMGB1-203ENST00000341423 SPRR2GQ9BYE4 73 aa3.31□□□□□ -1.88
HMGB1-203ENST00000341423 SYNE2Q8WXH0 6885 aaKnown RBP3.3□□□□□ -1.88
HMGB1-203ENST00000341423 LCE3AQ5TA76 89 aa3.3□□□□□ -1.88
HMGB1-203ENST00000341423 LCE3BQ5TA77 95 aa3.29□□□□□ -1.88
HMGB1-203ENST00000341423 DNAH10Q8IVF4 4471 aa3.28□□□□□ -1.88
HMGB1-203ENST00000341423 HECTD4Q9Y4D8 3996 aa3.28□□□□□ -1.88
HMGB1-203ENST00000341423 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-203ENST00000341423 LRP1BQ9NZR2 4599 aa3.27□□□□□ -1.89
HMGB1-203ENST00000341423 KRTAP6-3Q3LI67 103 aa3.26□□□□□ -1.89
HMGB1-203ENST00000341423 KRTAP19-4Q3LI73 84 aa3.25□□□□□ -1.89
HMGB1-203ENST00000341423 UBR4Q5T4S7 5183 aa3.25□□□□□ -1.89
HMGB1-203ENST00000341423 MACF1Q9UPN3 7388 aaKnown RBP3.24□□□□□ -1.89
HMGB1-203ENST00000341423 FAT1Q14517 4588 aa3.24□□□□□ -1.89
HMGB1-203ENST00000341423 MT4P47944 62 aa3.24□□□□□ -1.89
HMGB1-203ENST00000341423 HERC1Q15751 4861 aa3.23□□□□□ -1.89
HMGB1-203ENST00000341423 DNAH9Q9NYC9 4486 aa3.21□□□□□ -1.89
HMGB1-203ENST00000341423 RYR2Q92736 4967 aa3.2□□□□□ -1.9
HMGB1-203ENST00000341423 DYNC1H1Q14204 4646 aaKnown RBP3.2□□□□□ -1.9
HMGB1-203ENST00000341423 FAT3Q8TDW7 4589 aa3.19□□□□□ -1.9
HMGB1-203ENST00000341423 KRTAP2-2Q9BYT5 123 aa3.18□□□□□ -1.9
HMGB1-203ENST00000341423 KRTAP2-1Q9BYU5 128 aa3.18□□□□□ -1.9
HMGB1-203ENST00000341423 PKHD1P08F94 4074 aa3.17□□□□□ -1.9
HMGB1-203ENST00000341423 MT1GP13640 62 aa3.17□□□□□ -1.9
HMGB1-203ENST00000341423 KRTAP23-1A1A580 65 aa3.16□□□□□ -1.9
HMGB1-203ENST00000341423 FAT2Q9NYQ8 4349 aa3.16□□□□□ -1.9
HMGB1-203ENST00000341423 HYDINQ4G0P3 5121 aa3.16□□□□□ -1.9
HMGB1-203ENST00000341423 KRTAP3-3Q9BYR6 98 aa3.16□□□□□ -1.9
HMGB1-203ENST00000341423 DYNC2H1Q8NCM8 4307 aaKnown RBP3.15□□□□□ -1.9
HMGB1-203ENST00000341423 SACSQ9NZJ4 4579 aa3.15□□□□□ -1.91
HMGB1-203ENST00000341423 KRTAP19-6Q3LI70 58 aa3.14□□□□□ -1.91
HMGB1-203ENST00000341423 KRTAP19-8Q3LI54 63 aa3.13□□□□□ -1.91
HMGB1-203ENST00000341423 KRTAP19-5Q3LI72 72 aa3.13□□□□□ -1.91
HMGB1-203ENST00000341423 VPS13BQ7Z7G8 4022 aa3.13□□□□□ -1.91
HMGB1-203ENST00000341423 KMT2CQ8NEZ4 4911 aaKnown RBP3.12□□□□□ -1.91
HMGB1-203ENST00000341423 TNXBP22105 4242 aa3.12□□□□□ -1.91
HMGB1-203ENST00000341423 LRP1Q07954 4544 aaKnown RBP3.12□□□□□ -1.91
HMGB1-203ENST00000341423 ABCA13Q86UQ4 5058 aa3.1□□□□□ -1.91
HMGB1-203ENST00000341423 LCE2AQ5TA79 106 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-203ENST00000341423 STARD9Q9P2P6 4700 aa3.1□□□□□ -1.91
HMGB1-203ENST00000341423 SYNE1Q8NF91 8797 aaKnown RBP3.1□□□□□ -1.91
HMGB1-203ENST00000341423 KRTAP9-8Q9BYQ0 159 aa3.09□□□□□ -1.91
HMGB1-203ENST00000341423 KRTAP9-3Q9BYQ3 159 aa3.09□□□□□ -1.91
HMGB1-203ENST00000341423 APOBP04114 4563 aaKnown RBP3.09□□□□□ -1.92
HMGB1-203ENST00000341423 FSIP2Q5CZC0 6907 aa3.09□□□□□ -1.92
HMGB1-203ENST00000341423 KRTAP3-2Q9BYR7 98 aa3.08□□□□□ -1.92
HMGB1-203ENST00000341423 DNAH8Q96JB1 4490 aa3.06□□□□□ -1.92
HMGB1-203ENST00000341423 PKHD1L1Q86WI1 4243 aa3.04□□□□□ -1.92
HMGB1-203ENST00000341423 MYCBP2O75592 4640 aa3.03□□□□□ -1.92
HMGB1-203ENST00000341423 DNAH17Q9UFH2 4485 aa3.03□□□□□ -1.92
HMGB1-203ENST00000341423 DNAH2Q9P225 4427 aa3□□□□□ -1.93
HMGB1-203ENST00000341423 KRTAP19-3Q7Z4W3 81 aa3□□□□□ -1.93
HMGB1-203ENST00000341423 LRP2P98164 4655 aa2.98□□□□□ -1.93
HMGB1-203ENST00000341423 LCE1AQ5T7P2 110 aa2.96□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms