RNA–Protein interactions for RNA: ENST00000336904.7

SNCA-201, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 3,041 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-201ENST00000336904 XP32Q5T750 250 aa4.63□□□□□ -1.67
SNCA-201ENST00000336904 MIR22HGQ0VDD5 57 aa4.61□□□□□ -1.67
SNCA-201ENST00000336904 A6NN06 94 aa4.6□□□□□ -1.67
SNCA-201ENST00000336904 ADM2Q7Z4H4 148 aa4.6□□□□□ -1.67
SNCA-201ENST00000336904 UQCR11O14957 56 aa4.59□□□□□ -1.68
SNCA-201ENST00000336904 SPATA8Q6RVD6 105 aa4.58□□□□□ -1.68
SNCA-201ENST00000336904 PRAC1Q96KF2 57 aa4.58□□□□□ -1.68
SNCA-201ENST00000336904 SEC61GP60059 68 aa4.58□□□□□ -1.68
SNCA-201ENST00000336904 RPL37P61927 97 aaKnown RBP4.57□□□□□ -1.68
SNCA-201ENST00000336904 COX6B2Q6YFQ2 88 aa4.57□□□□□ -1.68
SNCA-201ENST00000336904 H0YAA0 97 aa4.54□□□□□ -1.68
SNCA-201ENST00000336904 KTN1-AS1Q86SY8 53 aa4.53□□□□□ -1.68
SNCA-201ENST00000336904 A0A1B0GU33 70 aa4.51□□□□□ -1.69
SNCA-201ENST00000336904 MUC2Q02817 5179 aa4.5□□□□□ -1.69
SNCA-201ENST00000336904 A0A0D9SG42 100 aa4.48□□□□□ -1.69
SNCA-201ENST00000336904 HERC2O95714 4834 aa4.47□□□□□ -1.69
SNCA-201ENST00000336904 H1FX-AS1Q4G0G2 97 aa4.47□□□□□ -1.69
SNCA-201ENST00000336904 S4R3F8 94 aa4.46□□□□□ -1.69
SNCA-201ENST00000336904 RBM12B-AS1Q9P1G2 102 aa4.46□□□□□ -1.7
SNCA-201ENST00000336904 KRTAP13-4Q3LI77 160 aa4.45□□□□□ -1.7
SNCA-201ENST00000336904 CRIPTQ9P021 101 aa4.45□□□□□ -1.7
SNCA-201ENST00000336904 P0C880 135 aa4.44□□□□□ -1.7
SNCA-201ENST00000336904 J3QL48 77 aa4.42□□□□□ -1.7
SNCA-201ENST00000336904 KRTAP10-6P60371 365 aaPredicted RBP4.42□□□□□ -1.7
SNCA-201ENST00000336904 TPRXLQ17RH7 258 aa4.4□□□□□ -1.71
SNCA-201ENST00000336904 HERC1Q15751 4861 aa4.39□□□□□ -1.71
SNCA-201ENST00000336904 CSAG1Q6PB30 78 aa4.38□□□□□ -1.71
SNCA-201ENST00000336904 PCLOQ9Y6V0 5065 aa4.38□□□□□ -1.71
SNCA-201ENST00000336904 KRTAP4-1Q9BYQ7 146 aa4.37□□□□□ -1.71
SNCA-201ENST00000336904 LINC01554Q52M75 96 aa4.32□□□□□ -1.72
SNCA-201ENST00000336904 MUC17Q685J3 4493 aa4.31□□□□□ -1.72
SNCA-201ENST00000336904 SPINT4Q6UDR6 99 aa4.29□□□□□ -1.72
SNCA-201ENST00000336904 BIRC6Q9NR09 4857 aa4.29□□□□□ -1.72
SNCA-201ENST00000336904 KRTAP12-2P59991 146 aa4.27□□□□□ -1.73
SNCA-201ENST00000336904 RNF213Q63HN8 5207 aa4.26□□□□□ -1.73
SNCA-201ENST00000336904 K7ERS5 55 aa4.26□□□□□ -1.73
SNCA-201ENST00000336904 LORP23490 312 aaPredicted RBP4.26□□□□□ -1.73
SNCA-201ENST00000336904 FAT4Q6V0I7 4981 aa4.25□□□□□ -1.73
SNCA-201ENST00000336904 SEC61BP60468 96 aaKnown RBP4.25□□□□□ -1.73
SNCA-201ENST00000336904 C10orf95Q9H7T3 257 aa4.23□□□□□ -1.73
SNCA-201ENST00000336904 M0QZ58 72 aa4.21□□□□□ -1.73
SNCA-201ENST00000336904 KRTAP12-1P59990 96 aa4.19□□□□□ -1.74
SNCA-201ENST00000336904 UBR4Q5T4S7 5183 aa4.18□□□□□ -1.74
SNCA-201ENST00000336904 KRTAP25-1Q3LHN0 102 aa4.18□□□□□ -1.74
SNCA-201ENST00000336904 ROMO1P60602 79 aa4.18□□□□□ -1.74
SNCA-201ENST00000336904 R4GN34 69 aa4.18□□□□□ -1.74
SNCA-201ENST00000336904 HMCN2Q8NDA2 5059 aa4.17□□□□□ -1.74
SNCA-201ENST00000336904 KRTAP19-2Q3LHN2 52 aa4.15□□□□□ -1.75
SNCA-201ENST00000336904 LCE2BO14633 110 aa4.13□□□□□ -1.75
SNCA-201ENST00000336904 LOC100996750A0A140TA64 210 aa4.07□□□□□ -1.76
SNCA-201ENST00000336904 KRTAP4-6Q9BYQ5 205 aa4.07□□□□□ -1.76
SNCA-201ENST00000336904 FLGP20930 4061 aaPredicted RBP4.07□□□□□ -1.76
SNCA-201ENST00000336904 LCE2AQ5TA79 106 aaPredicted RBP4.05□□□□□ -1.76
SNCA-201ENST00000336904 M0R2T5 61 aa4.01□□□□□ -1.77
SNCA-201ENST00000336904 LCE2CQ5TA81 110 aa3.98□□□□□ -1.77
SNCA-201ENST00000336904 CAMK2N1Q7Z7J9 78 aa3.97□□□□□ -1.77
SNCA-201ENST00000336904 MT1HP80294 61 aa3.9□□□□□ -1.79
SNCA-201ENST00000336904 KRTAP10-10P60014 251 aa3.85□□□□□ -1.79
SNCA-201ENST00000336904 MT1FP04733 61 aa3.84□□□□□ -1.79
SNCA-201ENST00000336904 KRTAP19-1Q8IUB9 90 aa3.82□□□□□ -1.8
SNCA-201ENST00000336904 MT2AP02795 61 aa3.81□□□□□ -1.8
SNCA-201ENST00000336904 USH2AO75445 5202 aa3.78□□□□□ -1.8
SNCA-201ENST00000336904 KRTAP15-1Q3LI76 137 aa3.77□□□□□ -1.81
SNCA-201ENST00000336904 KRTAP9-8Q9BYQ0 159 aa3.77□□□□□ -1.81
SNCA-201ENST00000336904 H3BS24 57 aa3.77□□□□□ -1.81
SNCA-201ENST00000336904 NDUFAF8A1L188 74 aa3.76□□□□□ -1.81
SNCA-201ENST00000336904 PLAC4Q8WY50 150 aa3.76□□□□□ -1.81
SNCA-201ENST00000336904 SPRR2GQ9BYE4 73 aa3.74□□□□□ -1.81
SNCA-201ENST00000336904 TNP1P09430 55 aa3.72□□□□□ -1.81
SNCA-201ENST00000336904 KMT2DO14686 5537 aa3.64□□□□□ -1.83
SNCA-201ENST00000336904 MT1BP07438 61 aa3.64□□□□□ -1.83
SNCA-201ENST00000336904 LCE3AQ5TA76 89 aa3.64□□□□□ -1.83
SNCA-201ENST00000336904 FSIP2Q5CZC0 6907 aa3.62□□□□□ -1.83
SNCA-201ENST00000336904 PP632Q6XCG6 107 aa3.61□□□□□ -1.83
SNCA-201ENST00000336904 KRTAP9-3Q9BYQ3 159 aa3.6□□□□□ -1.83
SNCA-201ENST00000336904 KRTAP10-5P60370 271 aa3.59□□□□□ -1.83
SNCA-201ENST00000336904 MT1XP80297 61 aa3.59□□□□□ -1.83
SNCA-201ENST00000336904 KRTAP4-8Q9BYQ9 185 aa3.58□□□□□ -1.84
SNCA-201ENST00000336904 KRTAP19-8Q3LI54 63 aa3.57□□□□□ -1.84
SNCA-201ENST00000336904 KRTAP10-7P60409 375 aaPredicted RBP3.56□□□□□ -1.84
SNCA-201ENST00000336904 KRTAP10-12P60413 245 aa3.48□□□□□ -1.85
SNCA-201ENST00000336904 LUZP6Q538Z0 58 aa3.47□□□□□ -1.85
SNCA-201ENST00000336904 KRTAP9-2Q9BYQ4 174 aa3.46□□□□□ -1.86
SNCA-201ENST00000336904 KRTAP4-8A0A0G2JLE6 195 aa3.44□□□□□ -1.86
SNCA-201ENST00000336904 KRTAP9-6A0A140TA67 174 aa3.43□□□□□ -1.86
SNCA-201ENST00000336904 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.43□□□□□ -1.86
SNCA-201ENST00000336904 KRTAP23-1A1A580 65 aa3.42□□□□□ -1.86
SNCA-201ENST00000336904 KRTAP12-3P60328 96 aa3.41□□□□□ -1.86
SNCA-201ENST00000336904 KRTAP8-1Q8IUC2 63 aa3.39□□□□□ -1.87
SNCA-201ENST00000336904 KRTAP4-12Q9BQ66 201 aa3.39□□□□□ -1.87
SNCA-201ENST00000336904 PRO2289Q9P1D8 64 aa3.38□□□□□ -1.87
SNCA-201ENST00000336904 SSPOA2VEC9 5147 aa3.37□□□□□ -1.87
SNCA-201ENST00000336904 KRTAP19-5Q3LI72 72 aa3.36□□□□□ -1.87
SNCA-201ENST00000336904 LCE3BQ5TA77 95 aa3.35□□□□□ -1.87
SNCA-201ENST00000336904 SPRR5A0A1B0GTR4 108 aa3.34□□□□□ -1.87
SNCA-201ENST00000336904 KRTAP9-9Q9BYP9 154 aa3.28□□□□□ -1.88
SNCA-201ENST00000336904 KRTAP9-4Q9BYQ2 154 aa3.28□□□□□ -1.88
SNCA-201ENST00000336904 KRTAP4-7Q9BYR0 210 aa3.28□□□□□ -1.88
SNCA-201ENST00000336904 KRTAP5-3Q6L8H2 238 aa3.27□□□□□ -1.89
SNCA-201ENST00000336904 FCGBPQ9Y6R7 5405 aaPredicted RBP3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms