RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 KTN1-AS1Q86SY8 53 aa7.67□□□□□ -1.18
TPM3-206ENST00000330188 COX6B2Q6YFQ2 88 aa7.64□□□□□ -1.19
TPM3-206ENST00000330188 SEC61GP60059 68 aa7.64□□□□□ -1.19
TPM3-206ENST00000330188 RPL37P61927 97 aaKnown RBP7.62□□□□□ -1.19
TPM3-206ENST00000330188 XP32Q5T750 250 aa7.6□□□□□ -1.19
TPM3-206ENST00000330188 MT1HL1P0DM35 61 aa7.6□□□□□ -1.19
TPM3-206ENST00000330188 KIAA1109Q2LD37 5005 aa7.59□□□□□ -1.19
TPM3-206ENST00000330188 DMBT1Q9UGM3 2413 aaPredicted RBP7.56□□□□□ -1.2
TPM3-206ENST00000330188 MYCBP2O75592 4640 aa7.53□□□□□ -1.2
TPM3-206ENST00000330188 LORP23490 312 aaPredicted RBP7.52□□□□□ -1.2
TPM3-206ENST00000330188 H0YAA0 97 aa7.49□□□□□ -1.21
TPM3-206ENST00000330188 A0A1B0GU33 70 aa7.48□□□□□ -1.21
TPM3-206ENST00000330188 EPPK1P58107 5090 aaKnown RBP7.47□□□□□ -1.21
TPM3-206ENST00000330188 H1FX-AS1Q4G0G2 97 aa7.46□□□□□ -1.21
TPM3-206ENST00000330188 RBM12B-AS1Q9P1G2 102 aa7.42□□□□□ -1.22
TPM3-206ENST00000330188 ADM2Q7Z4H4 148 aa7.39□□□□□ -1.23
TPM3-206ENST00000330188 TPRXLQ17RH7 258 aa7.38□□□□□ -1.23
TPM3-206ENST00000330188 S4R3F8 94 aa7.38□□□□□ -1.23
TPM3-206ENST00000330188 PRAC1Q96KF2 57 aa7.37□□□□□ -1.23
TPM3-206ENST00000330188 LPAP08519 4548 aa7.34□□□□□ -1.23
TPM3-206ENST00000330188 KRTAP10-6P60371 365 aaPredicted RBP7.33□□□□□ -1.24
TPM3-206ENST00000330188 KRTAP4-5Q9BYR2 181 aa7.33□□□□□ -1.24
TPM3-206ENST00000330188 LRP2P98164 4655 aa7.33□□□□□ -1.24
TPM3-206ENST00000330188 ABCA13Q86UQ4 5058 aa7.26□□□□□ -1.25
TPM3-206ENST00000330188 KRTAP13-4Q3LI77 160 aa7.24□□□□□ -1.25
TPM3-206ENST00000330188 P0C880 135 aa7.2□□□□□ -1.26
TPM3-206ENST00000330188 CSAG1Q6PB30 78 aa7.18□□□□□ -1.26
TPM3-206ENST00000330188 K7ERS5 55 aa7.18□□□□□ -1.26
TPM3-206ENST00000330188 A0A0D9SG42 100 aa7.13□□□□□ -1.27
TPM3-206ENST00000330188 BIRC6Q9NR09 4857 aa7.1□□□□□ -1.27
TPM3-206ENST00000330188 SEC61BP60468 96 aaKnown RBP7.09□□□□□ -1.28
TPM3-206ENST00000330188 MUC17Q685J3 4493 aa7.08□□□□□ -1.28
TPM3-206ENST00000330188 LINC01554Q52M75 96 aa7.07□□□□□ -1.28
TPM3-206ENST00000330188 HERC2O95714 4834 aa7.05□□□□□ -1.28
TPM3-206ENST00000330188 KRTAP25-1Q3LHN0 102 aa7.02□□□□□ -1.29
TPM3-206ENST00000330188 KRTAP4-1Q9BYQ7 146 aa7.02□□□□□ -1.29
TPM3-206ENST00000330188 ROMO1P60602 79 aa7.01□□□□□ -1.29
TPM3-206ENST00000330188 M0QZ58 72 aa6.97□□□□□ -1.29
TPM3-206ENST00000330188 KRTAP12-2P59991 146 aa6.97□□□□□ -1.29
TPM3-206ENST00000330188 KRTAP12-1P59990 96 aa6.94□□□□□ -1.3
TPM3-206ENST00000330188 CRIPTQ9P021 101 aa6.94□□□□□ -1.3
TPM3-206ENST00000330188 KRTAP19-2Q3LHN2 52 aa6.9□□□□□ -1.3
TPM3-206ENST00000330188 SPINT4Q6UDR6 99 aa6.9□□□□□ -1.3
TPM3-206ENST00000330188 R4GN34 69 aa6.82□□□□□ -1.32
TPM3-206ENST00000330188 PCLOQ9Y6V0 5065 aa6.79□□□□□ -1.32
TPM3-206ENST00000330188 C10orf95Q9H7T3 257 aa6.74□□□□□ -1.33
TPM3-206ENST00000330188 MUC2Q02817 5179 aa6.7□□□□□ -1.34
TPM3-206ENST00000330188 FLGP20930 4061 aaPredicted RBP6.68□□□□□ -1.34
TPM3-206ENST00000330188 HMCN2Q8NDA2 5059 aa6.67□□□□□ -1.34
TPM3-206ENST00000330188 HERC1Q15751 4861 aa6.67□□□□□ -1.34
TPM3-206ENST00000330188 A0A0A0MQY5 61 aa6.45□□□□□ -1.38
TPM3-206ENST00000330188 KRTAP23-1A1A580 65 aa6.45□□□□□ -1.38
TPM3-206ENST00000330188 CAMK2N1Q7Z7J9 78 aa6.44□□□□□ -1.38
TPM3-206ENST00000330188 FAT4Q6V0I7 4981 aa6.41□□□□□ -1.38
TPM3-206ENST00000330188 KRTAP15-1Q3LI76 137 aa6.37□□□□□ -1.39
TPM3-206ENST00000330188 RNF213Q63HN8 5207 aa6.35□□□□□ -1.39
TPM3-206ENST00000330188 MT1HP80294 61 aa6.35□□□□□ -1.39
TPM3-206ENST00000330188 M0R2T5 61 aa6.32□□□□□ -1.4
TPM3-206ENST00000330188 SPRR2GQ9BYE4 73 aa6.32□□□□□ -1.4
TPM3-206ENST00000330188 UBR4Q5T4S7 5183 aa6.31□□□□□ -1.4
TPM3-206ENST00000330188 KRTAP19-1Q8IUB9 90 aa6.29□□□□□ -1.4
TPM3-206ENST00000330188 PP632Q6XCG6 107 aa6.26□□□□□ -1.41
TPM3-206ENST00000330188 MT2AP02795 61 aa6.22□□□□□ -1.41
TPM3-206ENST00000330188 MT1FP04733 61 aa6.22□□□□□ -1.41
TPM3-206ENST00000330188 TNP1P09430 55 aa6.2□□□□□ -1.42
TPM3-206ENST00000330188 KRTAP9-8Q9BYQ0 159 aa6.2□□□□□ -1.42
TPM3-206ENST00000330188 PLAC4Q8WY50 150 aa6.19□□□□□ -1.42
TPM3-206ENST00000330188 KRTAP10-10P60014 251 aa6.18□□□□□ -1.42
TPM3-206ENST00000330188 NDUFAF8A1L188 74 aa6.11□□□□□ -1.43
TPM3-206ENST00000330188 KRTAP19-8Q3LI54 63 aa6.07□□□□□ -1.44
TPM3-206ENST00000330188 MT1BP07438 61 aa5.99□□□□□ -1.45
TPM3-206ENST00000330188 KRTAP9-3Q9BYQ3 159 aa5.95□□□□□ -1.46
TPM3-206ENST00000330188 LCE3AQ5TA76 89 aa5.91□□□□□ -1.46
TPM3-206ENST00000330188 KRTAP10-5P60370 271 aa5.9□□□□□ -1.46
TPM3-206ENST00000330188 MT1XP80297 61 aa5.9□□□□□ -1.46
TPM3-206ENST00000330188 KRTAP19-4Q3LI73 84 aa5.87□□□□□ -1.47
TPM3-206ENST00000330188 SPRR5A0A1B0GTR4 108 aa5.81□□□□□ -1.48
TPM3-206ENST00000330188 LUZP6Q538Z0 58 aa5.81□□□□□ -1.48
TPM3-206ENST00000330188 KRTAP8-1Q8IUC2 63 aa5.77□□□□□ -1.49
TPM3-206ENST00000330188 KRTAP10-12P60413 245 aa5.73□□□□□ -1.49
TPM3-206ENST00000330188 KRTAP10-7P60409 375 aaPredicted RBP5.72□□□□□ -1.49
TPM3-206ENST00000330188 PRO2289Q9P1D8 64 aa5.69□□□□□ -1.5
TPM3-206ENST00000330188 KRTAP12-3P60328 96 aa5.63□□□□□ -1.51
TPM3-206ENST00000330188 LCE4AQ5TA78 99 aa5.54□□□□□ -1.52
TPM3-206ENST00000330188 USH2AO75445 5202 aa5.53□□□□□ -1.52
TPM3-206ENST00000330188 KRTAP9-6A0A140TA67 174 aa5.5□□□□□ -1.53
TPM3-206ENST00000330188 KRTAP9-7A8MTY7 169 aa5.5□□□□□ -1.53
TPM3-206ENST00000330188 KRTAP19-5Q3LI72 72 aa5.45□□□□□ -1.54
TPM3-206ENST00000330188 LOC100996750A0A140TA64 210 aa5.43□□□□□ -1.54
TPM3-206ENST00000330188 KRTAP4-6Q9BYQ5 205 aa5.43□□□□□ -1.54
TPM3-206ENST00000330188 KRTAP4-8A0A0G2JLE6 195 aa5.39□□□□□ -1.55
TPM3-206ENST00000330188 KRTAP4-8Q9BYQ9 185 aa5.39□□□□□ -1.55
TPM3-206ENST00000330188 KMT2DO14686 5537 aa5.39□□□□□ -1.55
TPM3-206ENST00000330188 KRTAP9-4Q9BYQ2 154 aa5.36□□□□□ -1.55
TPM3-206ENST00000330188 KRTAP4-12Q9BQ66 201 aa5.36□□□□□ -1.55
TPM3-206ENST00000330188 KRTAP9-9Q9BYP9 154 aa5.32□□□□□ -1.56
TPM3-206ENST00000330188 LCE3CQ5T5A8 94 aa5.3□□□□□ -1.56
TPM3-206ENST00000330188 SSPOA2VEC9 5147 aa5.28□□□□□ -1.56
TPM3-206ENST00000330188 KRTAP19-7Q3SYF9 63 aa5.27□□□□□ -1.57
TPM3-206ENST00000330188 KRTAP9-2Q9BYQ4 174 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms