RNA–Protein interactions for RNA: ENST00000322344.7

PNKP-201, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PNKP, Length 2,041 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-201ENST00000322344 KRTAP17-1Q9BYP8 105 aa11.56□□□□□ -0.56
PNKP-201ENST00000322344 RYR3Q15413 4870 aa11.56□□□□□ -0.56
PNKP-201ENST00000322344 DMBT1Q9UGM3 2413 aaPredicted RBP11.43□□□□□ -0.58
PNKP-201ENST00000322344 KRTAP3-3Q9BYR6 98 aa11.42□□□□□ -0.58
PNKP-201ENST00000322344 PRAC1Q96KF2 57 aa11.41□□□□□ -0.58
PNKP-201ENST00000322344 ADM2Q7Z4H4 148 aa11.4□□□□□ -0.59
PNKP-201ENST00000322344 S4R3F8 94 aa11.4□□□□□ -0.59
PNKP-201ENST00000322344 KIAA1109Q2LD37 5005 aa11.35□□□□□ -0.59
PNKP-201ENST00000322344 TPRXLQ17RH7 258 aa11.35□□□□□ -0.59
PNKP-201ENST00000322344 KRTAP10-6P60371 365 aaPredicted RBP11.28□□□□□ -0.6
PNKP-201ENST00000322344 MYCBP2O75592 4640 aa11.27□□□□□ -0.61
PNKP-201ENST00000322344 K7ERS5 55 aa11.25□□□□□ -0.61
PNKP-201ENST00000322344 KRTAP3-2Q9BYR7 98 aa11.23□□□□□ -0.61
PNKP-201ENST00000322344 CSAG1Q6PB30 78 aa11.15□□□□□ -0.62
PNKP-201ENST00000322344 EPPK1P58107 5090 aaKnown RBP11.15□□□□□ -0.62
PNKP-201ENST00000322344 KRTAP13-4Q3LI77 160 aa11.08□□□□□ -0.64
PNKP-201ENST00000322344 LINC01554Q52M75 96 aa11.07□□□□□ -0.64
PNKP-201ENST00000322344 P0C880 135 aa11.05□□□□□ -0.64
PNKP-201ENST00000322344 KRTAP4-5Q9BYR2 181 aa11.03□□□□□ -0.64
PNKP-201ENST00000322344 LRP2P98164 4655 aa10.98□□□□□ -0.65
PNKP-201ENST00000322344 A0A0D9SG42 100 aa10.97□□□□□ -0.65
PNKP-201ENST00000322344 SEC61BP60468 96 aaKnown RBP10.94□□□□□ -0.66
PNKP-201ENST00000322344 KRTAP25-1Q3LHN0 102 aa10.94□□□□□ -0.66
PNKP-201ENST00000322344 LPAP08519 4548 aa10.93□□□□□ -0.66
PNKP-201ENST00000322344 ROMO1P60602 79 aa10.92□□□□□ -0.66
PNKP-201ENST00000322344 M0QZ58 72 aa10.84□□□□□ -0.67
PNKP-201ENST00000322344 J3QL48 77 aa10.83□□□□□ -0.68
PNKP-201ENST00000322344 ABCA13Q86UQ4 5058 aa10.83□□□□□ -0.68
PNKP-201ENST00000322344 KRTAP12-2P59991 146 aa10.73□□□□□ -0.69
PNKP-201ENST00000322344 KRTAP12-1P59990 96 aa10.71□□□□□ -0.69
PNKP-201ENST00000322344 CRIPTQ9P021 101 aa10.68□□□□□ -0.7
PNKP-201ENST00000322344 BIRC6Q9NR09 4857 aa10.67□□□□□ -0.7
PNKP-201ENST00000322344 SPINT4Q6UDR6 99 aa10.66□□□□□ -0.7
PNKP-201ENST00000322344 MUC17Q685J3 4493 aa10.65□□□□□ -0.7
PNKP-201ENST00000322344 KRTAP4-1Q9BYQ7 146 aa10.64□□□□□ -0.71
PNKP-201ENST00000322344 HERC2O95714 4834 aa10.56□□□□□ -0.72
PNKP-201ENST00000322344 R4GN34 69 aa10.55□□□□□ -0.72
PNKP-201ENST00000322344 KRTAP19-2Q3LHN2 52 aa10.49□□□□□ -0.73
PNKP-201ENST00000322344 C10orf95Q9H7T3 257 aa10.38□□□□□ -0.75
PNKP-201ENST00000322344 LORP23490 312 aaPredicted RBP10.34□□□□□ -0.75
PNKP-201ENST00000322344 PCLOQ9Y6V0 5065 aa10.19□□□□□ -0.78
PNKP-201ENST00000322344 FLGP20930 4061 aaPredicted RBP10.13□□□□□ -0.79
PNKP-201ENST00000322344 HERC1Q15751 4861 aa10.03□□□□□ -0.8
PNKP-201ENST00000322344 HMCN2Q8NDA2 5059 aa10.03□□□□□ -0.8
PNKP-201ENST00000322344 CAMK2N1Q7Z7J9 78 aa9.99□□□□□ -0.81
PNKP-201ENST00000322344 MUC2Q02817 5179 aa9.94□□□□□ -0.82
PNKP-201ENST00000322344 LCE2CQ5TA81 110 aa9.92□□□□□ -0.82
PNKP-201ENST00000322344 KRTAP15-1Q3LI76 137 aa9.91□□□□□ -0.82
PNKP-201ENST00000322344 PP632Q6XCG6 107 aa9.82□□□□□ -0.84
PNKP-201ENST00000322344 H3BS24 57 aa9.72□□□□□ -0.85
PNKP-201ENST00000322344 SPRR2GQ9BYE4 73 aa9.7□□□□□ -0.86
PNKP-201ENST00000322344 M0R2T5 61 aa9.68□□□□□ -0.86
PNKP-201ENST00000322344 MT1HP80294 61 aa9.67□□□□□ -0.86
PNKP-201ENST00000322344 TNP1P09430 55 aa9.63□□□□□ -0.87
PNKP-201ENST00000322344 PLAC4Q8WY50 150 aa9.6□□□□□ -0.87
PNKP-201ENST00000322344 KRTAP19-1Q8IUB9 90 aa9.6□□□□□ -0.87
PNKP-201ENST00000322344 KRTAP23-1A1A580 65 aa9.58□□□□□ -0.88
PNKP-201ENST00000322344 RNF213Q63HN8 5207 aa9.53□□□□□ -0.88
PNKP-201ENST00000322344 FAT4Q6V0I7 4981 aa9.53□□□□□ -0.88
PNKP-201ENST00000322344 NDUFAF8A1L188 74 aa9.52□□□□□ -0.89
PNKP-201ENST00000322344 MT2AP02795 61 aa9.49□□□□□ -0.89
PNKP-201ENST00000322344 MT1FP04733 61 aa9.46□□□□□ -0.9
PNKP-201ENST00000322344 KRTAP10-10P60014 251 aa9.46□□□□□ -0.9
PNKP-201ENST00000322344 KRTAP9-8Q9BYQ0 159 aa9.43□□□□□ -0.9
PNKP-201ENST00000322344 UBR4Q5T4S7 5183 aa9.4□□□□□ -0.91
PNKP-201ENST00000322344 KRTAP19-8Q3LI54 63 aa9.32□□□□□ -0.92
PNKP-201ENST00000322344 LUZP6Q538Z0 58 aa9.14□□□□□ -0.95
PNKP-201ENST00000322344 MT1BP07438 61 aa9.14□□□□□ -0.95
PNKP-201ENST00000322344 LCE3AQ5TA76 89 aa9.07□□□□□ -0.96
PNKP-201ENST00000322344 KRTAP9-3Q9BYQ3 159 aa9.05□□□□□ -0.96
PNKP-201ENST00000322344 KRTAP10-5P60370 271 aa9.03□□□□□ -0.96
PNKP-201ENST00000322344 SPRR5A0A1B0GTR4 108 aa9.02□□□□□ -0.97
PNKP-201ENST00000322344 MT1XP80297 61 aa9.02□□□□□ -0.97
PNKP-201ENST00000322344 KRTAP8-1Q8IUC2 63 aa8.93□□□□□ -0.98
PNKP-201ENST00000322344 KRTAP10-12P60413 245 aa8.83□□□□□ -1
PNKP-201ENST00000322344 PRO2289Q9P1D8 64 aa8.83□□□□□ -1
PNKP-201ENST00000322344 KRTAP10-7P60409 375 aaPredicted RBP8.71□□□□□ -1.01
PNKP-201ENST00000322344 KRTAP12-3P60328 96 aa8.69□□□□□ -1.02
PNKP-201ENST00000322344 LCE2AQ5TA79 106 aaPredicted RBP8.68□□□□□ -1.02
PNKP-201ENST00000322344 LCE2BO14633 110 aa8.67□□□□□ -1.02
PNKP-201ENST00000322344 A0A0A0MQY5 61 aa8.56□□□□□ -1.04
PNKP-201ENST00000322344 KRTAP19-5Q3LI72 72 aa8.35□□□□□ -1.07
PNKP-201ENST00000322344 USH2AO75445 5202 aa8.19□□□□□ -1.1
PNKP-201ENST00000322344 LCE3CQ5T5A8 94 aa8.17□□□□□ -1.1
PNKP-201ENST00000322344 KRTAP4-8A0A0G2JLE6 195 aa8.15□□□□□ -1.1
PNKP-201ENST00000322344 KRTAP4-8Q9BYQ9 185 aa8.15□□□□□ -1.1
PNKP-201ENST00000322344 KRTAP19-7Q3SYF9 63 aa8.03□□□□□ -1.12
PNKP-201ENST00000322344 KRTAP19-4Q3LI73 84 aa8.01□□□□□ -1.13
PNKP-201ENST00000322344 KMT2DO14686 5537 aa7.96□□□□□ -1.14
PNKP-201ENST00000322344 KRTAP19-6Q3LI70 58 aa7.93□□□□□ -1.14
PNKP-201ENST00000322344 SSPOA2VEC9 5147 aa7.92□□□□□ -1.14
PNKP-201ENST00000322344 MT1EP04732 61 aa7.85□□□□□ -1.15
PNKP-201ENST00000322344 INE1O15225 51 aa7.84□□□□□ -1.15
PNKP-201ENST00000322344 MT1LQ93083 61 aa7.81□□□□□ -1.16
PNKP-201ENST00000322344 LCE2DQ5TA82 110 aaPredicted RBP7.78□□□□□ -1.16
PNKP-201ENST00000322344 KRTAP9-6A8MVA2 160 aa7.76□□□□□ -1.17
PNKP-201ENST00000322344 KRTAP4-7Q9BYR0 210 aa7.7□□□□□ -1.18
PNKP-201ENST00000322344 FSIP2Q5CZC0 6907 aa7.66□□□□□ -1.18
PNKP-201ENST00000322344 KRTAP2-3P0C7H8 128 aa7.54□□□□□ -1.2
PNKP-201ENST00000322344 KRTAP2-4Q9BYR9 128 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms