RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 A0A0A0MQY5 61 aa5.32□□□□□ -1.56
CAPN3-201ENST00000318023 H0YAA0 97 aa5.31□□□□□ -1.56
CAPN3-201ENST00000318023 SSBP3-AS1Q7Z2R9 100 aa5.3□□□□□ -1.56
CAPN3-201ENST00000318023 IGKV2D-30A0A075B6S6 120 aa5.29□□□□□ -1.56
CAPN3-201ENST00000318023 IGKV2-30P06310 120 aa5.29□□□□□ -1.56
CAPN3-201ENST00000318023 NDUFAF8A1L188 74 aa5.28□□□□□ -1.56
CAPN3-201ENST00000318023 PKHD1L1Q86WI1 4243 aa5.27□□□□□ -1.57
CAPN3-201ENST00000318023 MT1HL1P0DM35 61 aa5.27□□□□□ -1.57
CAPN3-201ENST00000318023 LRP2P98164 4655 aa5.27□□□□□ -1.57
CAPN3-201ENST00000318023 KRTAP13-1Q8IUC0 172 aa5.27□□□□□ -1.57
CAPN3-201ENST00000318023 UBR4Q5T4S7 5183 aa5.27□□□□□ -1.57
CAPN3-201ENST00000318023 SPINT4Q6UDR6 99 aa5.26□□□□□ -1.57
CAPN3-201ENST00000318023 KRTAP16-1A8MUX0 517 aa5.22□□□□□ -1.57
CAPN3-201ENST00000318023 KRTAP1-4P0C5Y4 121 aa5.21□□□□□ -1.58
CAPN3-201ENST00000318023 TYMSOSQ8TAI1 123 aa5.21□□□□□ -1.58
CAPN3-201ENST00000318023 HMCN2Q8NDA2 5059 aa5.19□□□□□ -1.58
CAPN3-201ENST00000318023 RNF213Q63HN8 5207 aa5.19□□□□□ -1.58
CAPN3-201ENST00000318023 C20orf166-AS1Q96NR2 134 aa5.19□□□□□ -1.58
CAPN3-201ENST00000318023 LPAP08519 4548 aa5.18□□□□□ -1.58
CAPN3-201ENST00000318023 TNXBP22105 4242 aa5.18□□□□□ -1.58
CAPN3-201ENST00000318023 KRTAP10-8P60410 259 aa5.18□□□□□ -1.58
CAPN3-201ENST00000318023 A0A1B0GU33 70 aa5.17□□□□□ -1.58
CAPN3-201ENST00000318023 KRTAP13-2Q52LG2 175 aa5.16□□□□□ -1.58
CAPN3-201ENST00000318023 C10orf95Q9H7T3 257 aa5.11□□□□□ -1.59
CAPN3-201ENST00000318023 TPRXLQ17RH7 258 aa5.11□□□□□ -1.59
CAPN3-201ENST00000318023 H1FX-AS1Q4G0G2 97 aa5.11□□□□□ -1.59
CAPN3-201ENST00000318023 K7ERS5 55 aa5.1□□□□□ -1.59
CAPN3-201ENST00000318023 MUC2Q02817 5179 aa5.1□□□□□ -1.59
CAPN3-201ENST00000318023 KRTAP15-1Q3LI76 137 aa5.09□□□□□ -1.59
CAPN3-201ENST00000318023 COX6B2Q6YFQ2 88 aa5.02□□□□□ -1.61
CAPN3-201ENST00000318023 A0A0D9SG42 100 aa5□□□□□ -1.61
CAPN3-201ENST00000318023 C9orf92A6NGG3 77 aa4.97□□□□□ -1.61
CAPN3-201ENST00000318023 LUZP6Q538Z0 58 aa4.97□□□□□ -1.61
CAPN3-201ENST00000318023 KRTAP3-1Q9BYR8 98 aa4.94□□□□□ -1.62
CAPN3-201ENST00000318023 RPL37P61927 97 aaKnown RBP4.94□□□□□ -1.62
CAPN3-201ENST00000318023 KRTAP13-4Q3LI77 160 aa4.9□□□□□ -1.62
CAPN3-201ENST00000318023 FAT4Q6V0I7 4981 aa4.9□□□□□ -1.63
CAPN3-201ENST00000318023 KRTAP10-6P60371 365 aaPredicted RBP4.8□□□□□ -1.64
CAPN3-201ENST00000318023 XP32Q5T750 250 aa4.79□□□□□ -1.64
CAPN3-201ENST00000318023 S4R3F8 94 aa4.79□□□□□ -1.64
CAPN3-201ENST00000318023 KRTAP12-2P59991 146 aa4.78□□□□□ -1.64
CAPN3-201ENST00000318023 KRTAP4-1Q9BYQ7 146 aa4.76□□□□□ -1.65
CAPN3-201ENST00000318023 RPS29P62273 56 aaKnown RBP4.76□□□□□ -1.65
CAPN3-201ENST00000318023 SEC61BP60468 96 aaKnown RBP4.73□□□□□ -1.65
CAPN3-201ENST00000318023 KRTAP3-2Q9BYR7 98 aa4.71□□□□□ -1.65
CAPN3-201ENST00000318023 FSIP2Q5CZC0 6907 aa4.7□□□□□ -1.66
CAPN3-201ENST00000318023 KRTAP3-3Q9BYR6 98 aa4.67□□□□□ -1.66
CAPN3-201ENST00000318023 KRTAP12-1P59990 96 aa4.66□□□□□ -1.66
CAPN3-201ENST00000318023 PLAC4Q8WY50 150 aa4.65□□□□□ -1.67
CAPN3-201ENST00000318023 M0R2T5 61 aa4.6□□□□□ -1.67
CAPN3-201ENST00000318023 MUC17Q685J3 4493 aa4.58□□□□□ -1.68
CAPN3-201ENST00000318023 LCE2AQ5TA79 106 aaPredicted RBP4.52□□□□□ -1.69
CAPN3-201ENST00000318023 LCE2CQ5TA81 110 aa4.52□□□□□ -1.69
CAPN3-201ENST00000318023 KRTAP19-2Q3LHN2 52 aa4.5□□□□□ -1.69
CAPN3-201ENST00000318023 MT1HP80294 61 aa4.49□□□□□ -1.69
CAPN3-201ENST00000318023 KRTAP9-2Q9BYQ4 174 aa4.42□□□□□ -1.7
CAPN3-201ENST00000318023 M0QZ58 72 aa4.4□□□□□ -1.71
CAPN3-201ENST00000318023 FLGP20930 4061 aaPredicted RBP4.36□□□□□ -1.71
CAPN3-201ENST00000318023 USH2AO75445 5202 aa4.36□□□□□ -1.71
CAPN3-201ENST00000318023 LORP23490 312 aaPredicted RBP4.33□□□□□ -1.72
CAPN3-201ENST00000318023 R4GN34 69 aa4.3□□□□□ -1.72
CAPN3-201ENST00000318023 KRTAP10-10P60014 251 aa4.28□□□□□ -1.72
CAPN3-201ENST00000318023 CAMK2N1Q7Z7J9 78 aa4.27□□□□□ -1.73
CAPN3-201ENST00000318023 KRTAP9-8Q9BYQ0 159 aa4.24□□□□□ -1.73
CAPN3-201ENST00000318023 PRO2289Q9P1D8 64 aa4.23□□□□□ -1.73
CAPN3-201ENST00000318023 MT2AP02795 61 aa4.22□□□□□ -1.73
CAPN3-201ENST00000318023 MT1FP04733 61 aa4.22□□□□□ -1.73
CAPN3-201ENST00000318023 PP632Q6XCG6 107 aa4.22□□□□□ -1.73
CAPN3-201ENST00000318023 KRTAP9-6A0A140TA67 174 aa4.2□□□□□ -1.74
CAPN3-201ENST00000318023 CRCT1Q9UGL9 99 aa4.18□□□□□ -1.74
CAPN3-201ENST00000318023 LCE2DQ5TA82 110 aaPredicted RBP4.16□□□□□ -1.74
CAPN3-201ENST00000318023 SSPOA2VEC9 5147 aa4.16□□□□□ -1.74
CAPN3-201ENST00000318023 SPRR5A0A1B0GTR4 108 aa4.14□□□□□ -1.75
CAPN3-201ENST00000318023 LCE2BO14633 110 aa4.11□□□□□ -1.75
CAPN3-201ENST00000318023 KRTAP9-3Q9BYQ3 159 aa4.08□□□□□ -1.76
CAPN3-201ENST00000318023 SYNE2Q8WXH0 6885 aaKnown RBP4.03□□□□□ -1.76
CAPN3-201ENST00000318023 FCGBPQ9Y6R7 5405 aaPredicted RBP4.03□□□□□ -1.77
CAPN3-201ENST00000318023 INE1O15225 51 aa4.02□□□□□ -1.77
CAPN3-201ENST00000318023 MACF1Q9UPN3 7388 aaKnown RBP4□□□□□ -1.77
CAPN3-201ENST00000318023 TNP1P09430 55 aa4□□□□□ -1.77
CAPN3-201ENST00000318023 KRTAP19-1Q8IUB9 90 aa4□□□□□ -1.77
CAPN3-201ENST00000318023 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.87□□□□□ -1.79
CAPN3-201ENST00000318023 KRTAP23-1A1A580 65 aa3.86□□□□□ -1.79
CAPN3-201ENST00000318023 MT1BP07438 61 aa3.85□□□□□ -1.79
CAPN3-201ENST00000318023 SPRR2GQ9BYE4 73 aa3.83□□□□□ -1.8
CAPN3-201ENST00000318023 KMT2DO14686 5537 aa3.82□□□□□ -1.8
CAPN3-201ENST00000318023 KRTAP9-7A8MTY7 169 aa3.82□□□□□ -1.8
CAPN3-201ENST00000318023 KRTAP19-6Q3LI70 58 aa3.82□□□□□ -1.8
CAPN3-201ENST00000318023 LCE3AQ5TA76 89 aa3.79□□□□□ -1.8
CAPN3-201ENST00000318023 KRTAP19-8Q3LI54 63 aa3.76□□□□□ -1.81
CAPN3-201ENST00000318023 MUC12Q9UKN1 5478 aa3.71□□□□□ -1.81
CAPN3-201ENST00000318023 KRTAP10-5P60370 271 aa3.69□□□□□ -1.82
CAPN3-201ENST00000318023 MT1XP80297 61 aa3.65□□□□□ -1.83
CAPN3-201ENST00000318023 MDN1Q9NU22 5596 aa3.63□□□□□ -1.83
CAPN3-201ENST00000318023 KRTAP4-8A0A0G2JLE6 195 aa3.61□□□□□ -1.83
CAPN3-201ENST00000318023 KRTAP4-8Q9BYQ9 185 aa3.61□□□□□ -1.83
CAPN3-201ENST00000318023 KRTAP10-12P60413 245 aa3.59□□□□□ -1.83
CAPN3-201ENST00000318023 KRTAP8-1Q8IUC2 63 aa3.58□□□□□ -1.84
CAPN3-201ENST00000318023 KRTAP10-7P60409 375 aaPredicted RBP3.56□□□□□ -1.84
CAPN3-201ENST00000318023 SPRR2FQ96RM1 72 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms