RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 LRP1BQ9NZR2 4599 aa4.37□□□□□ -1.71
PDLIM5-201ENST00000317968 PRAC1Q96KF2 57 aa4.35□□□□□ -1.71
PDLIM5-201ENST00000317968 FAT2Q9NYQ8 4349 aa4.32□□□□□ -1.72
PDLIM5-201ENST00000317968 KRTAP4-5Q9BYR2 181 aa4.32□□□□□ -1.72
PDLIM5-201ENST00000317968 SACSQ9NZJ4 4579 aa4.32□□□□□ -1.72
PDLIM5-201ENST00000317968 RYR1P21817 5038 aa4.31□□□□□ -1.72
PDLIM5-201ENST00000317968 CSMD3Q7Z407 3707 aa4.31□□□□□ -1.72
PDLIM5-201ENST00000317968 H0YAA0 97 aa4.28□□□□□ -1.72
PDLIM5-201ENST00000317968 PP632Q6XCG6 107 aa4.26□□□□□ -1.73
PDLIM5-201ENST00000317968 KMT2AQ03164 3969 aa4.26□□□□□ -1.73
PDLIM5-201ENST00000317968 KIAA1109Q2LD37 5005 aa4.25□□□□□ -1.73
PDLIM5-201ENST00000317968 KRTAP3-1Q9BYR8 98 aa4.24□□□□□ -1.73
PDLIM5-201ENST00000317968 FAT1Q14517 4588 aa4.22□□□□□ -1.73
PDLIM5-201ENST00000317968 RYR3Q15413 4870 aa4.21□□□□□ -1.74
PDLIM5-201ENST00000317968 APOBP04114 4563 aaKnown RBP4.2□□□□□ -1.74
PDLIM5-201ENST00000317968 HECTD4Q9Y4D8 3996 aa4.2□□□□□ -1.74
PDLIM5-201ENST00000317968 A8MU10 97 aa4.2□□□□□ -1.74
PDLIM5-201ENST00000317968 BIRC6Q9NR09 4857 aa4.2□□□□□ -1.74
PDLIM5-201ENST00000317968 HYDINQ4G0P3 5121 aa4.19□□□□□ -1.74
PDLIM5-201ENST00000317968 KRTAP25-1Q3LHN0 102 aa4.18□□□□□ -1.74
PDLIM5-201ENST00000317968 LYSTQ99698 3801 aa4.15□□□□□ -1.75
PDLIM5-201ENST00000317968 PKD1P98161 4303 aa4.14□□□□□ -1.75
PDLIM5-201ENST00000317968 KRTAP17-1Q9BYP8 105 aa4.12□□□□□ -1.75
PDLIM5-201ENST00000317968 KMT2CQ8NEZ4 4911 aaKnown RBP4.1□□□□□ -1.75
PDLIM5-201ENST00000317968 VPS13BQ7Z7G8 4022 aa4.1□□□□□ -1.75
PDLIM5-201ENST00000317968 P0C880 135 aa4.07□□□□□ -1.76
PDLIM5-201ENST00000317968 KRTAP3-3Q9BYR6 98 aa4.06□□□□□ -1.76
PDLIM5-201ENST00000317968 FRAS1Q86XX4 4008 aa4.04□□□□□ -1.76
PDLIM5-201ENST00000317968 KRTAP10-6P60371 365 aaPredicted RBP4.03□□□□□ -1.76
PDLIM5-201ENST00000317968 HSPG2P98160 4391 aa4.03□□□□□ -1.76
PDLIM5-201ENST00000317968 HERC2O95714 4834 aa4.02□□□□□ -1.77
PDLIM5-201ENST00000317968 NDUFAF8A1L188 74 aa4□□□□□ -1.77
PDLIM5-201ENST00000317968 C10orf95Q9H7T3 257 aa4□□□□□ -1.77
PDLIM5-201ENST00000317968 PKHD1P08F94 4074 aa3.99□□□□□ -1.77
PDLIM5-201ENST00000317968 KRTAP3-2Q9BYR7 98 aa3.99□□□□□ -1.77
PDLIM5-201ENST00000317968 FAT3Q8TDW7 4589 aa3.97□□□□□ -1.77
PDLIM5-201ENST00000317968 KRTAP4-1Q9BYQ7 146 aa3.95□□□□□ -1.78
PDLIM5-201ENST00000317968 PKHD1L1Q86WI1 4243 aa3.94□□□□□ -1.78
PDLIM5-201ENST00000317968 LRP1Q07954 4544 aaKnown RBP3.94□□□□□ -1.78
PDLIM5-201ENST00000317968 MYCBP2O75592 4640 aa3.94□□□□□ -1.78
PDLIM5-201ENST00000317968 EPPK1P58107 5090 aaKnown RBP3.92□□□□□ -1.78
PDLIM5-201ENST00000317968 KRTAP12-1P59990 96 aa3.9□□□□□ -1.79
PDLIM5-201ENST00000317968 KRTAP13-4Q3LI77 160 aa3.9□□□□□ -1.79
PDLIM5-201ENST00000317968 ABCA13Q86UQ4 5058 aa3.87□□□□□ -1.79
PDLIM5-201ENST00000317968 HERC1Q15751 4861 aa3.86□□□□□ -1.79
PDLIM5-201ENST00000317968 KRTAP12-2P59991 146 aa3.83□□□□□ -1.8
PDLIM5-201ENST00000317968 MT1HP80294 61 aa3.82□□□□□ -1.8
PDLIM5-201ENST00000317968 TNXBP22105 4242 aa3.82□□□□□ -1.8
PDLIM5-201ENST00000317968 PCLOQ9Y6V0 5065 aa3.79□□□□□ -1.8
PDLIM5-201ENST00000317968 KRTAP15-1Q3LI76 137 aa3.75□□□□□ -1.81
PDLIM5-201ENST00000317968 KRTAP10-12P60413 245 aa3.75□□□□□ -1.81
PDLIM5-201ENST00000317968 SPRR2GQ9BYE4 73 aa3.75□□□□□ -1.81
PDLIM5-201ENST00000317968 MT2AP02795 61 aa3.73□□□□□ -1.81
PDLIM5-201ENST00000317968 KRTAP19-2Q3LHN2 52 aa3.73□□□□□ -1.81
PDLIM5-201ENST00000317968 LCE2CQ5TA81 110 aa3.72□□□□□ -1.81
PDLIM5-201ENST00000317968 KRTAP23-1A1A580 65 aa3.72□□□□□ -1.81
PDLIM5-201ENST00000317968 LRP2P98164 4655 aa3.7□□□□□ -1.82
PDLIM5-201ENST00000317968 KRTAP8-1Q8IUC2 63 aa3.7□□□□□ -1.82
PDLIM5-201ENST00000317968 LORP23490 312 aaPredicted RBP3.68□□□□□ -1.82
PDLIM5-201ENST00000317968 MUC17Q685J3 4493 aa3.66□□□□□ -1.82
PDLIM5-201ENST00000317968 HMCN2Q8NDA2 5059 aa3.65□□□□□ -1.82
PDLIM5-201ENST00000317968 MT1FP04733 61 aa3.64□□□□□ -1.83
PDLIM5-201ENST00000317968 KRTAP19-8Q3LI54 63 aa3.64□□□□□ -1.83
PDLIM5-201ENST00000317968 KRTAP9-8Q9BYQ0 159 aa3.6□□□□□ -1.83
PDLIM5-201ENST00000317968 KRTAP19-1Q8IUB9 90 aa3.58□□□□□ -1.84
PDLIM5-201ENST00000317968 RNF213Q63HN8 5207 aa3.57□□□□□ -1.84
PDLIM5-201ENST00000317968 FLGP20930 4061 aaPredicted RBP3.54□□□□□ -1.84
PDLIM5-201ENST00000317968 KRTAP12-3P60328 96 aa3.54□□□□□ -1.84
PDLIM5-201ENST00000317968 CRCT1Q9UGL9 99 aa3.51□□□□□ -1.85
PDLIM5-201ENST00000317968 LCE2AQ5TA79 106 aaPredicted RBP3.5□□□□□ -1.85
PDLIM5-201ENST00000317968 KRTAP9-3Q9BYQ3 159 aa3.5□□□□□ -1.85
PDLIM5-201ENST00000317968 LPAP08519 4548 aa3.5□□□□□ -1.85
PDLIM5-201ENST00000317968 MT1BP07438 61 aa3.45□□□□□ -1.86
PDLIM5-201ENST00000317968 SPRR2FQ96RM1 72 aa3.45□□□□□ -1.86
PDLIM5-201ENST00000317968 KRTAP19-4Q3LI73 84 aa3.44□□□□□ -1.86
PDLIM5-201ENST00000317968 FAT4Q6V0I7 4981 aa3.43□□□□□ -1.86
PDLIM5-201ENST00000317968 INE1O15225 51 aa3.43□□□□□ -1.86
PDLIM5-201ENST00000317968 LCE3AQ5TA76 89 aa3.43□□□□□ -1.86
PDLIM5-201ENST00000317968 UBR4Q5T4S7 5183 aa3.41□□□□□ -1.86
PDLIM5-201ENST00000317968 KRTAP10-5P60370 271 aa3.4□□□□□ -1.86
PDLIM5-201ENST00000317968 KRTAP10-7P60409 375 aaPredicted RBP3.4□□□□□ -1.86
PDLIM5-201ENST00000317968 SPRR2EP22531 72 aa3.37□□□□□ -1.87
PDLIM5-201ENST00000317968 SPRR2BP35325 72 aa3.37□□□□□ -1.87
PDLIM5-201ENST00000317968 SPRR2AP35326 72 aa3.37□□□□□ -1.87
PDLIM5-201ENST00000317968 MT1XP80297 61 aa3.36□□□□□ -1.87
PDLIM5-201ENST00000317968 LCE2DQ5TA82 110 aaPredicted RBP3.35□□□□□ -1.87
PDLIM5-201ENST00000317968 LCE2BO14633 110 aa3.32□□□□□ -1.88
PDLIM5-201ENST00000317968 SPRR2DP22532 72 aa3.29□□□□□ -1.88
PDLIM5-201ENST00000317968 KRTAP19-6Q3LI70 58 aa3.28□□□□□ -1.88
PDLIM5-201ENST00000317968 KRTAP9-2Q9BYQ4 174 aa3.24□□□□□ -1.89
PDLIM5-201ENST00000317968 KRTAP9-6A0A140TA67 174 aa3.22□□□□□ -1.89
PDLIM5-201ENST00000317968 KRTAP19-5Q3LI72 72 aa3.19□□□□□ -1.9
PDLIM5-201ENST00000317968 MUC2Q02817 5179 aa3.17□□□□□ -1.9
PDLIM5-201ENST00000317968 KRTAP12-4P60329 112 aa3.12□□□□□ -1.91
PDLIM5-201ENST00000317968 LCE3CQ5T5A8 94 aa3.09□□□□□ -1.91
PDLIM5-201ENST00000317968 MT1GP13640 62 aa3.08□□□□□ -1.92
PDLIM5-201ENST00000317968 SPRR5A0A1B0GTR4 108 aa3.05□□□□□ -1.92
PDLIM5-201ENST00000317968 USH2AO75445 5202 aa3.02□□□□□ -1.93
PDLIM5-201ENST00000317968 KRTAP4-8A0A0G2JLE6 195 aa3.01□□□□□ -1.93
PDLIM5-201ENST00000317968 MT1EP04732 61 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 137.4 ms