RNA–Protein interactions for RNA: ENST00000316097.12

SCAMP4-201, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP4, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-201ENST00000316097 DMBT1Q9UGM3 2413 aaPredicted RBP9.28□□□□□ -0.92
SCAMP4-201ENST00000316097 KRTAP10-8P60410 259 aa9.28□□□□□ -0.92
SCAMP4-201ENST00000316097 FAT3Q8TDW7 4589 aa9.27□□□□□ -0.93
SCAMP4-201ENST00000316097 KRTAP4-5Q9BYR2 181 aa9.25□□□□□ -0.93
SCAMP4-201ENST00000316097 A0A1B0GU33 70 aa9.25□□□□□ -0.93
SCAMP4-201ENST00000316097 KRTAP25-1Q3LHN0 102 aa9.22□□□□□ -0.93
SCAMP4-201ENST00000316097 H1FX-AS1Q4G0G2 97 aa9.19□□□□□ -0.94
SCAMP4-201ENST00000316097 KRTAP3-1Q9BYR8 98 aa9.19□□□□□ -0.94
SCAMP4-201ENST00000316097 MT1HL1P0DM35 61 aa9.16□□□□□ -0.94
SCAMP4-201ENST00000316097 C20orf166-AS1Q96NR2 134 aa9.1□□□□□ -0.95
SCAMP4-201ENST00000316097 ABCA13Q86UQ4 5058 aa9.09□□□□□ -0.95
SCAMP4-201ENST00000316097 CRIPTQ9P021 101 aa9.08□□□□□ -0.96
SCAMP4-201ENST00000316097 ROMO1P60602 79 aa9.06□□□□□ -0.96
SCAMP4-201ENST00000316097 K7ERS5 55 aa9.04□□□□□ -0.96
SCAMP4-201ENST00000316097 COX6B2Q6YFQ2 88 aa9.03□□□□□ -0.96
SCAMP4-201ENST00000316097 BIRC6Q9NR09 4857 aa8.97□□□□□ -0.97
SCAMP4-201ENST00000316097 HERC2O95714 4834 aa8.96□□□□□ -0.97
SCAMP4-201ENST00000316097 LPAP08519 4548 aa8.91□□□□□ -0.98
SCAMP4-201ENST00000316097 XP32Q5T750 250 aa8.89□□□□□ -0.99
SCAMP4-201ENST00000316097 LRP2P98164 4655 aa8.84□□□□□ -0.99
SCAMP4-201ENST00000316097 RPL37P61927 97 aaKnown RBP8.84□□□□□ -0.99
SCAMP4-201ENST00000316097 A0A0D9SG42 100 aa8.83□□□□□ -1
SCAMP4-201ENST00000316097 P0C880 135 aa8.82□□□□□ -1
SCAMP4-201ENST00000316097 KRTAP10-6P60371 365 aaPredicted RBP8.82□□□□□ -1
SCAMP4-201ENST00000316097 J3QL48 77 aa8.81□□□□□ -1
SCAMP4-201ENST00000316097 KRTAP13-4Q3LI77 160 aa8.81□□□□□ -1
SCAMP4-201ENST00000316097 PCLOQ9Y6V0 5065 aa8.78□□□□□ -1
SCAMP4-201ENST00000316097 KRTAP3-3Q9BYR6 98 aa8.77□□□□□ -1.01
SCAMP4-201ENST00000316097 TPRXLQ17RH7 258 aa8.74□□□□□ -1.01
SCAMP4-201ENST00000316097 KRTAP3-2Q9BYR7 98 aa8.72□□□□□ -1.01
SCAMP4-201ENST00000316097 SPINT4Q6UDR6 99 aa8.71□□□□□ -1.02
SCAMP4-201ENST00000316097 C10orf95Q9H7T3 257 aa8.68□□□□□ -1.02
SCAMP4-201ENST00000316097 S4R3F8 94 aa8.65□□□□□ -1.03
SCAMP4-201ENST00000316097 HERC1Q15751 4861 aa8.64□□□□□ -1.03
SCAMP4-201ENST00000316097 KRTAP12-2P59991 146 aa8.56□□□□□ -1.04
SCAMP4-201ENST00000316097 MUC2Q02817 5179 aa8.49□□□□□ -1.05
SCAMP4-201ENST00000316097 KRTAP15-1Q3LI76 137 aa8.47□□□□□ -1.05
SCAMP4-201ENST00000316097 NDUFAF8A1L188 74 aa8.46□□□□□ -1.06
SCAMP4-201ENST00000316097 KRTAP12-1P59990 96 aa8.45□□□□□ -1.06
SCAMP4-201ENST00000316097 KRTAP4-1Q9BYQ7 146 aa8.43□□□□□ -1.06
SCAMP4-201ENST00000316097 HMCN2Q8NDA2 5059 aa8.41□□□□□ -1.06
SCAMP4-201ENST00000316097 SEC61BP60468 96 aaKnown RBP8.39□□□□□ -1.07
SCAMP4-201ENST00000316097 MUC17Q685J3 4493 aa8.37□□□□□ -1.07
SCAMP4-201ENST00000316097 A0A0A0MQY5 61 aa8.29□□□□□ -1.08
SCAMP4-201ENST00000316097 M0QZ58 72 aa8.27□□□□□ -1.08
SCAMP4-201ENST00000316097 UBR4Q5T4S7 5183 aa8.2□□□□□ -1.1
SCAMP4-201ENST00000316097 RNF213Q63HN8 5207 aa8.18□□□□□ -1.1
SCAMP4-201ENST00000316097 KRTAP19-2Q3LHN2 52 aa8.13□□□□□ -1.11
SCAMP4-201ENST00000316097 FAT4Q6V0I7 4981 aa8.08□□□□□ -1.12
SCAMP4-201ENST00000316097 R4GN34 69 aa8.07□□□□□ -1.12
SCAMP4-201ENST00000316097 PLAC4Q8WY50 150 aa7.96□□□□□ -1.14
SCAMP4-201ENST00000316097 LORP23490 312 aaPredicted RBP7.93□□□□□ -1.14
SCAMP4-201ENST00000316097 FLGP20930 4061 aaPredicted RBP7.9□□□□□ -1.15
SCAMP4-201ENST00000316097 LCE2CQ5TA81 110 aa7.89□□□□□ -1.15
SCAMP4-201ENST00000316097 CAMK2N1Q7Z7J9 78 aa7.72□□□□□ -1.17
SCAMP4-201ENST00000316097 M0R2T5 61 aa7.71□□□□□ -1.17
SCAMP4-201ENST00000316097 MT1HP80294 61 aa7.71□□□□□ -1.17
SCAMP4-201ENST00000316097 PP632Q6XCG6 107 aa7.7□□□□□ -1.18
SCAMP4-201ENST00000316097 LUZP6Q538Z0 58 aa7.69□□□□□ -1.18
SCAMP4-201ENST00000316097 KRTAP9-8Q9BYQ0 159 aa7.45□□□□□ -1.22
SCAMP4-201ENST00000316097 MT2AP02795 61 aa7.45□□□□□ -1.22
SCAMP4-201ENST00000316097 MT1FP04733 61 aa7.45□□□□□ -1.22
SCAMP4-201ENST00000316097 TNP1P09430 55 aa7.44□□□□□ -1.22
SCAMP4-201ENST00000316097 KRTAP10-10P60014 251 aa7.43□□□□□ -1.22
SCAMP4-201ENST00000316097 KRTAP19-1Q8IUB9 90 aa7.36□□□□□ -1.23
SCAMP4-201ENST00000316097 SPRR5A0A1B0GTR4 108 aa7.31□□□□□ -1.24
SCAMP4-201ENST00000316097 KRTAP23-1A1A580 65 aa7.31□□□□□ -1.24
SCAMP4-201ENST00000316097 SPRR2GQ9BYE4 73 aa7.29□□□□□ -1.24
SCAMP4-201ENST00000316097 LCE2AQ5TA79 106 aaPredicted RBP7.23□□□□□ -1.25
SCAMP4-201ENST00000316097 KRTAP9-3Q9BYQ3 159 aa7.16□□□□□ -1.26
SCAMP4-201ENST00000316097 USH2AO75445 5202 aa7.08□□□□□ -1.28
SCAMP4-201ENST00000316097 MT1BP07438 61 aa7.05□□□□□ -1.28
SCAMP4-201ENST00000316097 KRTAP19-8Q3LI54 63 aa7.04□□□□□ -1.28
SCAMP4-201ENST00000316097 LCE3AQ5TA76 89 aa7.03□□□□□ -1.28
SCAMP4-201ENST00000316097 LCE2BO14633 110 aa7□□□□□ -1.29
SCAMP4-201ENST00000316097 KRTAP10-5P60370 271 aa6.87□□□□□ -1.31
SCAMP4-201ENST00000316097 MT1XP80297 61 aa6.87□□□□□ -1.31
SCAMP4-201ENST00000316097 FSIP2Q5CZC0 6907 aa6.84□□□□□ -1.31
SCAMP4-201ENST00000316097 PRO2289Q9P1D8 64 aa6.81□□□□□ -1.32
SCAMP4-201ENST00000316097 KRTAP8-1Q8IUC2 63 aa6.79□□□□□ -1.32
SCAMP4-201ENST00000316097 INE1O15225 51 aa6.7□□□□□ -1.34
SCAMP4-201ENST00000316097 KRTAP10-7P60409 375 aaPredicted RBP6.69□□□□□ -1.34
SCAMP4-201ENST00000316097 SSPOA2VEC9 5147 aa6.65□□□□□ -1.34
SCAMP4-201ENST00000316097 KRTAP12-3P60328 96 aa6.65□□□□□ -1.34
SCAMP4-201ENST00000316097 KMT2DO14686 5537 aa6.63□□□□□ -1.35
SCAMP4-201ENST00000316097 KRTAP10-12P60413 245 aa6.62□□□□□ -1.35
SCAMP4-201ENST00000316097 KRTAP4-8A0A0G2JLE6 195 aa6.45□□□□□ -1.38
SCAMP4-201ENST00000316097 KRTAP4-8Q9BYQ9 185 aa6.45□□□□□ -1.38
SCAMP4-201ENST00000316097 KRTAP19-6Q3LI70 58 aa6.38□□□□□ -1.39
SCAMP4-201ENST00000316097 LCE2DQ5TA82 110 aaPredicted RBP6.38□□□□□ -1.39
SCAMP4-201ENST00000316097 FCGBPQ9Y6R7 5405 aaPredicted RBP6.31□□□□□ -1.4
SCAMP4-201ENST00000316097 KRTAP19-5Q3LI72 72 aa6.29□□□□□ -1.4
SCAMP4-201ENST00000316097 LCE3CQ5T5A8 94 aa6.27□□□□□ -1.41
SCAMP4-201ENST00000316097 KRTAP9-2Q9BYQ4 174 aa6.2□□□□□ -1.42
SCAMP4-201ENST00000316097 KRTAP19-7Q3SYF9 63 aa6.13□□□□□ -1.43
SCAMP4-201ENST00000316097 KRTAP9-6A8MVA2 160 aa6.12□□□□□ -1.43
SCAMP4-201ENST00000316097 MACF1Q9UPN3 7388 aaKnown RBP6.07□□□□□ -1.44
SCAMP4-201ENST00000316097 MUC12Q9UKN1 5478 aa6.01□□□□□ -1.45
SCAMP4-201ENST00000316097 CRCT1Q9UGL9 99 aa5.98□□□□□ -1.45
SCAMP4-201ENST00000316097 MT1EP04732 61 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms