RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 KRTAP10-8P60410 259 aa5.77□□□□□ -1.49
UPF3B-201ENST00000276201 ADM2Q7Z4H4 148 aa5.77□□□□□ -1.49
UPF3B-201ENST00000276201 KRTAP1-4P0C5Y4 121 aa5.77□□□□□ -1.49
UPF3B-201ENST00000276201 KRTAP13-2Q52LG2 175 aa5.76□□□□□ -1.49
UPF3B-201ENST00000276201 TNXBP22105 4242 aa5.75□□□□□ -1.49
UPF3B-201ENST00000276201 RPS29P62273 56 aaKnown RBP5.67□□□□□ -1.5
UPF3B-201ENST00000276201 CSAG1Q6PB30 78 aa5.67□□□□□ -1.5
UPF3B-201ENST00000276201 HMCN2Q8NDA2 5059 aa5.66□□□□□ -1.5
UPF3B-201ENST00000276201 SPINK1P00995 79 aa5.65□□□□□ -1.5
UPF3B-201ENST00000276201 A8MUU9 505 aa5.64□□□□□ -1.51
UPF3B-201ENST00000276201 TYMSOSQ8TAI1 123 aa5.63□□□□□ -1.51
UPF3B-201ENST00000276201 H3BS24 57 aa5.61□□□□□ -1.51
UPF3B-201ENST00000276201 H0YAA0 97 aa5.6□□□□□ -1.51
UPF3B-201ENST00000276201 KRTAP25-1Q3LHN0 102 aa5.57□□□□□ -1.52
UPF3B-201ENST00000276201 LINC00304Q8N9R0 145 aa5.57□□□□□ -1.52
UPF3B-201ENST00000276201 C20orf166-AS1Q96NR2 134 aa5.56□□□□□ -1.52
UPF3B-201ENST00000276201 A0A1B0GU33 70 aa5.56□□□□□ -1.52
UPF3B-201ENST00000276201 H1FX-AS1Q4G0G2 97 aa5.55□□□□□ -1.52
UPF3B-201ENST00000276201 LRP2P98164 4655 aa5.51□□□□□ -1.53
UPF3B-201ENST00000276201 UBR4Q5T4S7 5183 aa5.51□□□□□ -1.53
UPF3B-201ENST00000276201 KRTAP3-1Q9BYR8 98 aa5.51□□□□□ -1.53
UPF3B-201ENST00000276201 K7ERS5 55 aa5.47□□□□□ -1.53
UPF3B-201ENST00000276201 LPAP08519 4548 aa5.45□□□□□ -1.54
UPF3B-201ENST00000276201 ROMO1P60602 79 aa5.45□□□□□ -1.54
UPF3B-201ENST00000276201 COX6B2Q6YFQ2 88 aa5.43□□□□□ -1.54
UPF3B-201ENST00000276201 TPRXLQ17RH7 258 aa5.4□□□□□ -1.55
UPF3B-201ENST00000276201 RNF213Q63HN8 5207 aa5.35□□□□□ -1.55
UPF3B-201ENST00000276201 C9orf92A6NGG3 77 aa5.34□□□□□ -1.55
UPF3B-201ENST00000276201 RPL37P61927 97 aaKnown RBP5.33□□□□□ -1.56
UPF3B-201ENST00000276201 KRTAP10-6P60371 365 aaPredicted RBP5.31□□□□□ -1.56
UPF3B-201ENST00000276201 LOC100996750A0A140TA64 210 aa5.29□□□□□ -1.56
UPF3B-201ENST00000276201 KRTAP4-6Q9BYQ5 205 aa5.29□□□□□ -1.56
UPF3B-201ENST00000276201 XP32Q5T750 250 aa5.26□□□□□ -1.57
UPF3B-201ENST00000276201 P0C880 135 aa5.26□□□□□ -1.57
UPF3B-201ENST00000276201 MUC17Q685J3 4493 aa5.24□□□□□ -1.57
UPF3B-201ENST00000276201 MUC2Q02817 5179 aa5.24□□□□□ -1.57
UPF3B-201ENST00000276201 KRTAP13-4Q3LI77 160 aa5.23□□□□□ -1.57
UPF3B-201ENST00000276201 SEC61BP60468 96 aaKnown RBP5.21□□□□□ -1.58
UPF3B-201ENST00000276201 CRIPTQ9P021 101 aa5.2□□□□□ -1.58
UPF3B-201ENST00000276201 KRTAP4-1Q9BYQ7 146 aa5.19□□□□□ -1.58
UPF3B-201ENST00000276201 S4R3F8 94 aa5.19□□□□□ -1.58
UPF3B-201ENST00000276201 KRTAP15-1Q3LI76 137 aa5.15□□□□□ -1.59
UPF3B-201ENST00000276201 SPINT4Q6UDR6 99 aa5.13□□□□□ -1.59
UPF3B-201ENST00000276201 A0A0A0MQY5 61 aa5.13□□□□□ -1.59
UPF3B-201ENST00000276201 A0A0D9SG42 100 aa5.12□□□□□ -1.59
UPF3B-201ENST00000276201 FAT4Q6V0I7 4981 aa5.1□□□□□ -1.59
UPF3B-201ENST00000276201 LCE2BO14633 110 aa5.09□□□□□ -1.59
UPF3B-201ENST00000276201 KRTAP12-1P59990 96 aa5.08□□□□□ -1.6
UPF3B-201ENST00000276201 KRTAP12-2P59991 146 aa5.08□□□□□ -1.6
UPF3B-201ENST00000276201 M0QZ58 72 aa5.07□□□□□ -1.6
UPF3B-201ENST00000276201 LCE2AQ5TA79 106 aaPredicted RBP5.07□□□□□ -1.6
UPF3B-201ENST00000276201 LCE2CQ5TA81 110 aa5.07□□□□□ -1.6
UPF3B-201ENST00000276201 C10orf95Q9H7T3 257 aa5.05□□□□□ -1.6
UPF3B-201ENST00000276201 KRTAP19-2Q3LHN2 52 aa5.04□□□□□ -1.6
UPF3B-201ENST00000276201 NDUFAF8A1L188 74 aa4.97□□□□□ -1.61
UPF3B-201ENST00000276201 MT1HP80294 61 aa4.94□□□□□ -1.62
UPF3B-201ENST00000276201 FLGP20930 4061 aaPredicted RBP4.87□□□□□ -1.63
UPF3B-201ENST00000276201 M0R2T5 61 aa4.84□□□□□ -1.64
UPF3B-201ENST00000276201 KRTAP9-2Q9BYQ4 174 aa4.83□□□□□ -1.64
UPF3B-201ENST00000276201 LORP23490 312 aaPredicted RBP4.82□□□□□ -1.64
UPF3B-201ENST00000276201 PLAC4Q8WY50 150 aa4.78□□□□□ -1.64
UPF3B-201ENST00000276201 PP632Q6XCG6 107 aa4.78□□□□□ -1.64
UPF3B-201ENST00000276201 R4GN34 69 aa4.78□□□□□ -1.64
UPF3B-201ENST00000276201 KRTAP23-1A1A580 65 aa4.7□□□□□ -1.66
UPF3B-201ENST00000276201 KRTAP9-8Q9BYQ0 159 aa4.7□□□□□ -1.66
UPF3B-201ENST00000276201 MT2AP02795 61 aa4.65□□□□□ -1.66
UPF3B-201ENST00000276201 MT1FP04733 61 aa4.62□□□□□ -1.67
UPF3B-201ENST00000276201 KRTAP9-6A0A140TA67 174 aa4.62□□□□□ -1.67
UPF3B-201ENST00000276201 LUZP6Q538Z0 58 aa4.61□□□□□ -1.67
UPF3B-201ENST00000276201 KRTAP10-10P60014 251 aa4.58□□□□□ -1.68
UPF3B-201ENST00000276201 CRCT1Q9UGL9 99 aa4.57□□□□□ -1.68
UPF3B-201ENST00000276201 FSIP2Q5CZC0 6907 aa4.55□□□□□ -1.68
UPF3B-201ENST00000276201 KRTAP9-3Q9BYQ3 159 aa4.55□□□□□ -1.68
UPF3B-201ENST00000276201 SPRR5A0A1B0GTR4 108 aa4.55□□□□□ -1.68
UPF3B-201ENST00000276201 CAMK2N1Q7Z7J9 78 aa4.54□□□□□ -1.68
UPF3B-201ENST00000276201 USH2AO75445 5202 aa4.49□□□□□ -1.69
UPF3B-201ENST00000276201 TNP1P09430 55 aa4.48□□□□□ -1.69
UPF3B-201ENST00000276201 SSPOA2VEC9 5147 aa4.42□□□□□ -1.7
UPF3B-201ENST00000276201 KRTAP4-8Q9BYQ9 185 aa4.4□□□□□ -1.71
UPF3B-201ENST00000276201 KRTAP19-1Q8IUB9 90 aa4.38□□□□□ -1.71
UPF3B-201ENST00000276201 KRTAP5-3Q6L8H2 238 aa4.36□□□□□ -1.71
UPF3B-201ENST00000276201 FCGBPQ9Y6R7 5405 aaPredicted RBP4.32□□□□□ -1.72
UPF3B-201ENST00000276201 KRTAP19-6Q3LI70 58 aa4.32□□□□□ -1.72
UPF3B-201ENST00000276201 SPRR2GQ9BYE4 73 aa4.32□□□□□ -1.72
UPF3B-201ENST00000276201 KRTAP19-8Q3LI54 63 aa4.28□□□□□ -1.72
UPF3B-201ENST00000276201 KRTAP4-8A0A0G2JLE6 195 aa4.27□□□□□ -1.73
UPF3B-201ENST00000276201 MT1BP07438 61 aa4.27□□□□□ -1.73
UPF3B-201ENST00000276201 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.26□□□□□ -1.73
UPF3B-201ENST00000276201 KRTAP4-7Q9BYR0 210 aa4.24□□□□□ -1.73
UPF3B-201ENST00000276201 PRO2289Q9P1D8 64 aa4.2□□□□□ -1.74
UPF3B-201ENST00000276201 INE1O15225 51 aa4.19□□□□□ -1.74
UPF3B-201ENST00000276201 KRTAP8-1Q8IUC2 63 aa4.18□□□□□ -1.74
UPF3B-201ENST00000276201 LCE3AQ5TA76 89 aa4.17□□□□□ -1.74
UPF3B-201ENST00000276201 KRTAP9-7A8MTY7 169 aa4.16□□□□□ -1.74
UPF3B-201ENST00000276201 KRTAP10-5P60370 271 aa4.14□□□□□ -1.75
UPF3B-201ENST00000276201 LCE3BQ5TA77 95 aa4.11□□□□□ -1.75
UPF3B-201ENST00000276201 MACF1Q9UPN3 7388 aaKnown RBP4.11□□□□□ -1.75
UPF3B-201ENST00000276201 SYNE2Q8WXH0 6885 aaKnown RBP4.05□□□□□ -1.76
UPF3B-201ENST00000276201 MT1XP80297 61 aa4.03□□□□□ -1.76
UPF3B-201ENST00000276201 KRTAP6-3Q3LI67 103 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms