RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 VPS13BQ7Z7G8 4022 aa4.81□□□□□ -1.64
PDGFC-201ENST00000274071 KRTAP10-1P60331 282 aa4.8□□□□□ -1.64
PDGFC-201ENST00000274071 KRTAP3-2Q9BYR7 98 aa4.79□□□□□ -1.64
PDGFC-201ENST00000274071 S4R3F8 94 aa4.79□□□□□ -1.64
PDGFC-201ENST00000274071 KMT2CQ8NEZ4 4911 aaKnown RBP4.78□□□□□ -1.64
PDGFC-201ENST00000274071 XP32Q5T750 250 aa4.77□□□□□ -1.65
PDGFC-201ENST00000274071 KRTAP12-2P59991 146 aa4.77□□□□□ -1.65
PDGFC-201ENST00000274071 PLAC4Q8WY50 150 aa4.72□□□□□ -1.65
PDGFC-201ENST00000274071 DYNC1H1Q14204 4646 aaKnown RBP4.72□□□□□ -1.65
PDGFC-201ENST00000274071 RYR2Q92736 4967 aa4.71□□□□□ -1.66
PDGFC-201ENST00000274071 KRTAP3-3Q9BYR6 98 aa4.68□□□□□ -1.66
PDGFC-201ENST00000274071 KRTAP12-1P59990 96 aa4.67□□□□□ -1.66
PDGFC-201ENST00000274071 KRTAP1-4P0C5Y4 121 aa4.67□□□□□ -1.66
PDGFC-201ENST00000274071 APOBP04114 4563 aaKnown RBP4.66□□□□□ -1.66
PDGFC-201ENST00000274071 FAT1Q14517 4588 aa4.66□□□□□ -1.66
PDGFC-201ENST00000274071 RYR3Q15413 4870 aa4.66□□□□□ -1.66
PDGFC-201ENST00000274071 J3QL48 77 aa4.65□□□□□ -1.67
PDGFC-201ENST00000274071 A0A1B0GVY2 172 aa4.64□□□□□ -1.67
PDGFC-201ENST00000274071 SMR3BP02814 79 aaPredicted RBP4.64□□□□□ -1.67
PDGFC-201ENST00000274071 LCE2DQ5TA82 110 aaPredicted RBP4.62□□□□□ -1.67
PDGFC-201ENST00000274071 C9orf92A6NGG3 77 aa4.62□□□□□ -1.67
PDGFC-201ENST00000274071 KRTAP10-4P60372 401 aaPredicted RBP4.55□□□□□ -1.68
PDGFC-201ENST00000274071 PKHD1L1Q86WI1 4243 aa4.54□□□□□ -1.68
PDGFC-201ENST00000274071 CAMK2N1Q7Z7J9 78 aa4.53□□□□□ -1.68
PDGFC-201ENST00000274071 RPS29P62273 56 aaKnown RBP4.5□□□□□ -1.69
PDGFC-201ENST00000274071 HSPG2P98160 4391 aa4.5□□□□□ -1.69
PDGFC-201ENST00000274071 EPPK1P58107 5090 aaKnown RBP4.5□□□□□ -1.69
PDGFC-201ENST00000274071 KRTAP10-8P60410 259 aa4.5□□□□□ -1.69
PDGFC-201ENST00000274071 MYCBP2O75592 4640 aa4.49□□□□□ -1.69
PDGFC-201ENST00000274071 RYR1P21817 5038 aa4.48□□□□□ -1.69
PDGFC-201ENST00000274071 LRP1Q07954 4544 aaKnown RBP4.48□□□□□ -1.69
PDGFC-201ENST00000274071 KIAA1109Q2LD37 5005 aa4.47□□□□□ -1.69
PDGFC-201ENST00000274071 TNXBP22105 4242 aa4.46□□□□□ -1.7
PDGFC-201ENST00000274071 M0QZ58 72 aa4.43□□□□□ -1.7
PDGFC-201ENST00000274071 Q5VSD8 79 aa4.43□□□□□ -1.7
PDGFC-201ENST00000274071 PRO2289Q9P1D8 64 aa4.43□□□□□ -1.7
PDGFC-201ENST00000274071 FAT3Q8TDW7 4589 aa4.42□□□□□ -1.7
PDGFC-201ENST00000274071 KRTAP17-1Q9BYP8 105 aa4.38□□□□□ -1.71
PDGFC-201ENST00000274071 PP632Q6XCG6 107 aa4.32□□□□□ -1.72
PDGFC-201ENST00000274071 SPRR5A0A1B0GTR4 108 aa4.29□□□□□ -1.72
PDGFC-201ENST00000274071 MT1HL1P0DM35 61 aa4.28□□□□□ -1.72
PDGFC-201ENST00000274071 KRTAP4-5Q9BYR2 181 aa4.27□□□□□ -1.73
PDGFC-201ENST00000274071 R4GN34 69 aa4.26□□□□□ -1.73
PDGFC-201ENST00000274071 ABCA13Q86UQ4 5058 aa4.25□□□□□ -1.73
PDGFC-201ENST00000274071 HERC2O95714 4834 aa4.21□□□□□ -1.74
PDGFC-201ENST00000274071 INE1O15225 51 aa4.2□□□□□ -1.74
PDGFC-201ENST00000274071 BIRC6Q9NR09 4857 aa4.2□□□□□ -1.74
PDGFC-201ENST00000274071 LRP2P98164 4655 aa4.19□□□□□ -1.74
PDGFC-201ENST00000274071 LPAP08519 4548 aa4.18□□□□□ -1.74
PDGFC-201ENST00000274071 LORP23490 312 aaPredicted RBP4.12□□□□□ -1.75
PDGFC-201ENST00000274071 PCLOQ9Y6V0 5065 aa4.11□□□□□ -1.75
PDGFC-201ENST00000274071 LOC100996750A0A140TA64 210 aa4.11□□□□□ -1.75
PDGFC-201ENST00000274071 KRTAP4-6Q9BYQ5 205 aa4.11□□□□□ -1.75
PDGFC-201ENST00000274071 HERC1Q15751 4861 aa4.09□□□□□ -1.76
PDGFC-201ENST00000274071 LCE2BO14633 110 aa4.05□□□□□ -1.76
PDGFC-201ENST00000274071 KRTAP23-1A1A580 65 aa4.02□□□□□ -1.77
PDGFC-201ENST00000274071 MUC17Q685J3 4493 aa4□□□□□ -1.77
PDGFC-201ENST00000274071 TNP1P09430 55 aa3.99□□□□□ -1.77
PDGFC-201ENST00000274071 LCE2CQ5TA81 110 aa3.98□□□□□ -1.77
PDGFC-201ENST00000274071 MUC2Q02817 5179 aa3.97□□□□□ -1.77
PDGFC-201ENST00000274071 KRTAP4-1Q9BYQ7 146 aa3.93□□□□□ -1.78
PDGFC-201ENST00000274071 HMCN2Q8NDA2 5059 aa3.91□□□□□ -1.78
PDGFC-201ENST00000274071 LCE2AQ5TA79 106 aaPredicted RBP3.9□□□□□ -1.79
PDGFC-201ENST00000274071 UBR4Q5T4S7 5183 aa3.87□□□□□ -1.79
PDGFC-201ENST00000274071 RNF213Q63HN8 5207 aa3.86□□□□□ -1.79
PDGFC-201ENST00000274071 KRTAP19-2Q3LHN2 52 aa3.83□□□□□ -1.8
PDGFC-201ENST00000274071 FLGP20930 4061 aaPredicted RBP3.82□□□□□ -1.8
PDGFC-201ENST00000274071 FAT4Q6V0I7 4981 aa3.8□□□□□ -1.8
PDGFC-201ENST00000274071 LCE3AQ5TA76 89 aa3.73□□□□□ -1.81
PDGFC-201ENST00000274071 KRTAP10-10P60014 251 aa3.69□□□□□ -1.82
PDGFC-201ENST00000274071 KRTAP10-12P60413 245 aa3.63□□□□□ -1.83
PDGFC-201ENST00000274071 KRTAP8-1Q8IUC2 63 aa3.62□□□□□ -1.83
PDGFC-201ENST00000274071 M0R2T5 61 aa3.61□□□□□ -1.83
PDGFC-201ENST00000274071 MT1HP80294 61 aa3.59□□□□□ -1.83
PDGFC-201ENST00000274071 KRTAP12-3P60328 96 aa3.52□□□□□ -1.85
PDGFC-201ENST00000274071 SPRR2GQ9BYE4 73 aa3.5□□□□□ -1.85
PDGFC-201ENST00000274071 MT2AP02795 61 aa3.49□□□□□ -1.85
PDGFC-201ENST00000274071 KRTAP19-1Q8IUB9 90 aa3.49□□□□□ -1.85
PDGFC-201ENST00000274071 KRTAP9-8Q9BYQ0 159 aa3.49□□□□□ -1.85
PDGFC-201ENST00000274071 MT1FP04733 61 aa3.48□□□□□ -1.85
PDGFC-201ENST00000274071 KRTAP4-8Q9BYQ9 185 aa3.46□□□□□ -1.86
PDGFC-201ENST00000274071 KRTAP10-5P60370 271 aa3.44□□□□□ -1.86
PDGFC-201ENST00000274071 KRTAP2-3P0C7H8 128 aa3.37□□□□□ -1.87
PDGFC-201ENST00000274071 KRTAP2-4Q9BYR9 128 aa3.37□□□□□ -1.87
PDGFC-201ENST00000274071 KRTAP2-1Q9BYU5 128 aa3.37□□□□□ -1.87
PDGFC-201ENST00000274071 KRTAP19-8Q3LI54 63 aa3.36□□□□□ -1.87
PDGFC-201ENST00000274071 LCE3CQ5T5A8 94 aa3.35□□□□□ -1.87
PDGFC-201ENST00000274071 KRTAP9-3Q9BYQ3 159 aa3.35□□□□□ -1.87
PDGFC-201ENST00000274071 USH2AO75445 5202 aa3.35□□□□□ -1.87
PDGFC-201ENST00000274071 KRTAP9-6A8MVA2 160 aa3.33□□□□□ -1.88
PDGFC-201ENST00000274071 KRTAP4-8A0A0G2JLE6 195 aa3.33□□□□□ -1.88
PDGFC-201ENST00000274071 MT1BP07438 61 aa3.33□□□□□ -1.88
PDGFC-201ENST00000274071 KRTAP4-7Q9BYR0 210 aa3.3□□□□□ -1.88
PDGFC-201ENST00000274071 KRTAP5-3Q6L8H2 238 aa3.3□□□□□ -1.88
PDGFC-201ENST00000274071 KRTAP9-2Q9BYQ4 174 aa3.29□□□□□ -1.88
PDGFC-201ENST00000274071 KRTAP9-6A0A140TA67 174 aa3.28□□□□□ -1.88
PDGFC-201ENST00000274071 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.28□□□□□ -1.88
PDGFC-201ENST00000274071 KRTAP10-7P60409 375 aaPredicted RBP3.27□□□□□ -1.89
PDGFC-201ENST00000274071 FSIP2Q5CZC0 6907 aa3.27□□□□□ -1.89
PDGFC-201ENST00000274071 MT1XP80297 61 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms