RNA–Protein interactions for RNA: ENST00000265810.8

PDLIM2-201, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 4,592 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-201ENST00000265810 FAT2Q9NYQ8 4349 aa7.23□□□□□ -1.25
PDLIM2-201ENST00000265810 PLAC4Q8WY50 150 aa7.23□□□□□ -1.25
PDLIM2-201ENST00000265810 KRTAP3-1Q9BYR8 98 aa7.23□□□□□ -1.25
PDLIM2-201ENST00000265810 HYDINQ4G0P3 5121 aa7.22□□□□□ -1.25
PDLIM2-201ENST00000265810 RYR1P21817 5038 aa7.2□□□□□ -1.26
PDLIM2-201ENST00000265810 DNAH8Q96JB1 4490 aa7.19□□□□□ -1.26
PDLIM2-201ENST00000265810 RYR3Q15413 4870 aa7.19□□□□□ -1.26
PDLIM2-201ENST00000265810 RYR2Q92736 4967 aa7.18□□□□□ -1.26
PDLIM2-201ENST00000265810 ROMO1P60602 79 aa7.16□□□□□ -1.26
PDLIM2-201ENST00000265810 P0C880 135 aa7.16□□□□□ -1.26
PDLIM2-201ENST00000265810 DNAH6Q9C0G6 4158 aa7.15□□□□□ -1.26
PDLIM2-201ENST00000265810 VPS13BQ7Z7G8 4022 aa7.12□□□□□ -1.27
PDLIM2-201ENST00000265810 HECTD4Q9Y4D8 3996 aa7.11□□□□□ -1.27
PDLIM2-201ENST00000265810 KRTAP25-1Q3LHN0 102 aa7.1□□□□□ -1.27
PDLIM2-201ENST00000265810 KRTAP10-10P60014 251 aa7.08□□□□□ -1.28
PDLIM2-201ENST00000265810 APOBP04114 4563 aaKnown RBP7.08□□□□□ -1.28
PDLIM2-201ENST00000265810 H0YAA0 97 aa7.08□□□□□ -1.28
PDLIM2-201ENST00000265810 LUZP6Q538Z0 58 aa7.06□□□□□ -1.28
PDLIM2-201ENST00000265810 KRTAP17-1Q9BYP8 105 aa7.06□□□□□ -1.28
PDLIM2-201ENST00000265810 KMT2CQ8NEZ4 4911 aaKnown RBP7.06□□□□□ -1.28
PDLIM2-201ENST00000265810 A0A0A0MQY5 61 aa7.01□□□□□ -1.29
PDLIM2-201ENST00000265810 PKHD1P08F94 4074 aa7.01□□□□□ -1.29
PDLIM2-201ENST00000265810 FRAS1Q86XX4 4008 aa7□□□□□ -1.29
PDLIM2-201ENST00000265810 LRP1Q07954 4544 aaKnown RBP6.95□□□□□ -1.3
PDLIM2-201ENST00000265810 MYCBP2O75592 4640 aa6.89□□□□□ -1.31
PDLIM2-201ENST00000265810 PKD1P98161 4303 aa6.87□□□□□ -1.31
PDLIM2-201ENST00000265810 KRTAP3-3Q9BYR6 98 aa6.86□□□□□ -1.31
PDLIM2-201ENST00000265810 KRTAP10-6P60371 365 aaPredicted RBP6.83□□□□□ -1.32
PDLIM2-201ENST00000265810 HSPG2P98160 4391 aa6.82□□□□□ -1.32
PDLIM2-201ENST00000265810 HERC2O95714 4834 aa6.82□□□□□ -1.32
PDLIM2-201ENST00000265810 TNP1P09430 55 aa6.81□□□□□ -1.32
PDLIM2-201ENST00000265810 BIRC6Q9NR09 4857 aa6.78□□□□□ -1.32
PDLIM2-201ENST00000265810 NDUFAF8A1L188 74 aa6.78□□□□□ -1.32
PDLIM2-201ENST00000265810 FAT3Q8TDW7 4589 aa6.77□□□□□ -1.33
PDLIM2-201ENST00000265810 KRTAP4-1Q9BYQ7 146 aa6.77□□□□□ -1.33
PDLIM2-201ENST00000265810 KRTAP13-4Q3LI77 160 aa6.75□□□□□ -1.33
PDLIM2-201ENST00000265810 KRTAP12-2P59991 146 aa6.74□□□□□ -1.33
PDLIM2-201ENST00000265810 EPPK1P58107 5090 aaKnown RBP6.72□□□□□ -1.33
PDLIM2-201ENST00000265810 KRTAP3-2Q9BYR7 98 aa6.71□□□□□ -1.33
PDLIM2-201ENST00000265810 C10orf95Q9H7T3 257 aa6.69□□□□□ -1.34
PDLIM2-201ENST00000265810 KRTAP12-1P59990 96 aa6.69□□□□□ -1.34
PDLIM2-201ENST00000265810 PRO2289Q9P1D8 64 aa6.62□□□□□ -1.35
PDLIM2-201ENST00000265810 LRP2P98164 4655 aa6.55□□□□□ -1.36
PDLIM2-201ENST00000265810 PP632Q6XCG6 107 aa6.52□□□□□ -1.37
PDLIM2-201ENST00000265810 LORP23490 312 aaPredicted RBP6.5□□□□□ -1.37
PDLIM2-201ENST00000265810 ABCA13Q86UQ4 5058 aa6.5□□□□□ -1.37
PDLIM2-201ENST00000265810 MT1HP80294 61 aa6.44□□□□□ -1.38
PDLIM2-201ENST00000265810 TNXBP22105 4242 aa6.4□□□□□ -1.39
PDLIM2-201ENST00000265810 LPAP08519 4548 aa6.39□□□□□ -1.39
PDLIM2-201ENST00000265810 PKHD1L1Q86WI1 4243 aa6.37□□□□□ -1.39
PDLIM2-201ENST00000265810 KRTAP15-1Q3LI76 137 aa6.36□□□□□ -1.39
PDLIM2-201ENST00000265810 HERC1Q15751 4861 aa6.34□□□□□ -1.39
PDLIM2-201ENST00000265810 PCLOQ9Y6V0 5065 aa6.28□□□□□ -1.4
PDLIM2-201ENST00000265810 MT2AP02795 61 aa6.27□□□□□ -1.41
PDLIM2-201ENST00000265810 MT1FP04733 61 aa6.2□□□□□ -1.42
PDLIM2-201ENST00000265810 SPRR2GQ9BYE4 73 aa6.11□□□□□ -1.43
PDLIM2-201ENST00000265810 LCE2CQ5TA81 110 aa6.11□□□□□ -1.43
PDLIM2-201ENST00000265810 KRTAP10-12P60413 245 aa6.06□□□□□ -1.44
PDLIM2-201ENST00000265810 KRTAP19-2Q3LHN2 52 aa6.01□□□□□ -1.45
PDLIM2-201ENST00000265810 HMCN2Q8NDA2 5059 aa5.96□□□□□ -1.45
PDLIM2-201ENST00000265810 KRTAP19-1Q8IUB9 90 aa5.96□□□□□ -1.46
PDLIM2-201ENST00000265810 KRTAP9-8Q9BYQ0 159 aa5.96□□□□□ -1.46
PDLIM2-201ENST00000265810 RNF213Q63HN8 5207 aa5.94□□□□□ -1.46
PDLIM2-201ENST00000265810 LCE3AQ5TA76 89 aa5.92□□□□□ -1.46
PDLIM2-201ENST00000265810 UBR4Q5T4S7 5183 aa5.91□□□□□ -1.46
PDLIM2-201ENST00000265810 MUC2Q02817 5179 aa5.87□□□□□ -1.47
PDLIM2-201ENST00000265810 MUC17Q685J3 4493 aa5.87□□□□□ -1.47
PDLIM2-201ENST00000265810 FAT4Q6V0I7 4981 aa5.85□□□□□ -1.47
PDLIM2-201ENST00000265810 KRTAP12-3P60328 96 aa5.85□□□□□ -1.47
PDLIM2-201ENST00000265810 FLGP20930 4061 aaPredicted RBP5.85□□□□□ -1.47
PDLIM2-201ENST00000265810 KRTAP19-8Q3LI54 63 aa5.82□□□□□ -1.48
PDLIM2-201ENST00000265810 KRTAP23-1A1A580 65 aa5.81□□□□□ -1.48
PDLIM2-201ENST00000265810 KRTAP9-3Q9BYQ3 159 aa5.76□□□□□ -1.49
PDLIM2-201ENST00000265810 MT1BP07438 61 aa5.74□□□□□ -1.49
PDLIM2-201ENST00000265810 KRTAP8-1Q8IUC2 63 aa5.72□□□□□ -1.49
PDLIM2-201ENST00000265810 MT1XP80297 61 aa5.64□□□□□ -1.51
PDLIM2-201ENST00000265810 LCE2AQ5TA79 106 aaPredicted RBP5.6□□□□□ -1.51
PDLIM2-201ENST00000265810 LCE2BO14633 110 aa5.6□□□□□ -1.51
PDLIM2-201ENST00000265810 KRTAP10-5P60370 271 aa5.6□□□□□ -1.51
PDLIM2-201ENST00000265810 KRTAP10-7P60409 375 aaPredicted RBP5.59□□□□□ -1.51
PDLIM2-201ENST00000265810 FSIP2Q5CZC0 6907 aa5.59□□□□□ -1.51
PDLIM2-201ENST00000265810 CRCT1Q9UGL9 99 aa5.54□□□□□ -1.52
PDLIM2-201ENST00000265810 KRTAP19-5Q3LI72 72 aa5.51□□□□□ -1.53
PDLIM2-201ENST00000265810 INE1O15225 51 aa5.46□□□□□ -1.54
PDLIM2-201ENST00000265810 SPRR2FQ96RM1 72 aa5.45□□□□□ -1.54
PDLIM2-201ENST00000265810 KRTAP4-8A0A0G2JLE6 195 aa5.4□□□□□ -1.54
PDLIM2-201ENST00000265810 KRTAP4-8Q9BYQ9 185 aa5.4□□□□□ -1.54
PDLIM2-201ENST00000265810 KRTAP9-2Q9BYQ4 174 aa5.28□□□□□ -1.56
PDLIM2-201ENST00000265810 LCE3CQ5T5A8 94 aa5.24□□□□□ -1.57
PDLIM2-201ENST00000265810 KRTAP19-6Q3LI70 58 aa5.24□□□□□ -1.57
PDLIM2-201ENST00000265810 LCE2DQ5TA82 110 aaPredicted RBP5.22□□□□□ -1.57
PDLIM2-201ENST00000265810 SPRR5A0A1B0GTR4 108 aa5.17□□□□□ -1.58
PDLIM2-201ENST00000265810 SPRR2EP22531 72 aa5.11□□□□□ -1.59
PDLIM2-201ENST00000265810 SPRR2BP35325 72 aa5.11□□□□□ -1.59
PDLIM2-201ENST00000265810 SPRR2AP35326 72 aa5.11□□□□□ -1.59
PDLIM2-201ENST00000265810 KRTAP19-4Q3LI73 84 aa5.1□□□□□ -1.59
PDLIM2-201ENST00000265810 USH2AO75445 5202 aa5.05□□□□□ -1.6
PDLIM2-201ENST00000265810 MT1GP13640 62 aa5.02□□□□□ -1.61
PDLIM2-201ENST00000265810 MT1EP04732 61 aa5.01□□□□□ -1.61
PDLIM2-201ENST00000265810 MT1LQ93083 61 aa4.96□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms