RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 KIAA1109Q2LD37 5005 aa5.77□□□□□ -1.49
MSH3-201ENST00000265081 MIR22HGQ0VDD5 57 aa5.76□□□□□ -1.49
MSH3-201ENST00000265081 KRTAP3-3Q9BYR6 98 aa5.75□□□□□ -1.49
MSH3-201ENST00000265081 LCE2DQ5TA82 110 aaPredicted RBP5.73□□□□□ -1.49
MSH3-201ENST00000265081 TPRXLQ17RH7 258 aa5.71□□□□□ -1.5
MSH3-201ENST00000265081 H0YAA0 97 aa5.7□□□□□ -1.5
MSH3-201ENST00000265081 LPAP08519 4548 aa5.69□□□□□ -1.5
MSH3-201ENST00000265081 A0A0A0MQY5 61 aa5.67□□□□□ -1.5
MSH3-201ENST00000265081 H1FX-AS1Q4G0G2 97 aa5.67□□□□□ -1.5
MSH3-201ENST00000265081 MUC17Q685J3 4493 aa5.66□□□□□ -1.5
MSH3-201ENST00000265081 KRTAP3-2Q9BYR7 98 aa5.64□□□□□ -1.51
MSH3-201ENST00000265081 ABCA13Q86UQ4 5058 aa5.64□□□□□ -1.51
MSH3-201ENST00000265081 KRTAP10-6P60371 365 aaPredicted RBP5.64□□□□□ -1.51
MSH3-201ENST00000265081 A0A1B0GU33 70 aa5.63□□□□□ -1.51
MSH3-201ENST00000265081 LRP2P98164 4655 aa5.6□□□□□ -1.51
MSH3-201ENST00000265081 S4R3F8 94 aa5.58□□□□□ -1.52
MSH3-201ENST00000265081 KRTAP4-5Q9BYR2 181 aa5.58□□□□□ -1.52
MSH3-201ENST00000265081 RBM12B-AS1Q9P1G2 102 aa5.55□□□□□ -1.52
MSH3-201ENST00000265081 HERC2O95714 4834 aa5.53□□□□□ -1.52
MSH3-201ENST00000265081 J3QL48 77 aa5.51□□□□□ -1.53
MSH3-201ENST00000265081 KRTAP13-4Q3LI77 160 aa5.5□□□□□ -1.53
MSH3-201ENST00000265081 ADM2Q7Z4H4 148 aa5.49□□□□□ -1.53
MSH3-201ENST00000265081 BIRC6Q9NR09 4857 aa5.48□□□□□ -1.53
MSH3-201ENST00000265081 DMBT1Q9UGM3 2413 aaPredicted RBP5.45□□□□□ -1.54
MSH3-201ENST00000265081 KRTAP19-2Q3LHN2 52 aa5.45□□□□□ -1.54
MSH3-201ENST00000265081 PRAC1Q96KF2 57 aa5.44□□□□□ -1.54
MSH3-201ENST00000265081 P0C880 135 aa5.43□□□□□ -1.54
MSH3-201ENST00000265081 KRTAP4-1Q9BYQ7 146 aa5.39□□□□□ -1.55
MSH3-201ENST00000265081 SEC61BP60468 96 aaKnown RBP5.39□□□□□ -1.55
MSH3-201ENST00000265081 CSAG1Q6PB30 78 aa5.38□□□□□ -1.55
MSH3-201ENST00000265081 FLGP20930 4061 aaPredicted RBP5.35□□□□□ -1.55
MSH3-201ENST00000265081 M0QZ58 72 aa5.33□□□□□ -1.56
MSH3-201ENST00000265081 K7ERS5 55 aa5.32□□□□□ -1.56
MSH3-201ENST00000265081 KRTAP25-1Q3LHN0 102 aa5.31□□□□□ -1.56
MSH3-201ENST00000265081 KRTAP12-1P59990 96 aa5.3□□□□□ -1.56
MSH3-201ENST00000265081 ROMO1P60602 79 aa5.29□□□□□ -1.56
MSH3-201ENST00000265081 KRTAP12-2P59991 146 aa5.29□□□□□ -1.56
MSH3-201ENST00000265081 LINC01554Q52M75 96 aa5.29□□□□□ -1.56
MSH3-201ENST00000265081 HMCN2Q8NDA2 5059 aa5.25□□□□□ -1.57
MSH3-201ENST00000265081 A0A0D9SG42 100 aa5.23□□□□□ -1.57
MSH3-201ENST00000265081 HERC1Q15751 4861 aa5.21□□□□□ -1.58
MSH3-201ENST00000265081 PCLOQ9Y6V0 5065 aa5.19□□□□□ -1.58
MSH3-201ENST00000265081 LORP23490 312 aaPredicted RBP5.16□□□□□ -1.58
MSH3-201ENST00000265081 LCE2CQ5TA81 110 aa5.1□□□□□ -1.59
MSH3-201ENST00000265081 MUC2Q02817 5179 aa5.09□□□□□ -1.59
MSH3-201ENST00000265081 R4GN34 69 aa5.09□□□□□ -1.6
MSH3-201ENST00000265081 SPINT4Q6UDR6 99 aa5.07□□□□□ -1.6
MSH3-201ENST00000265081 CRIPTQ9P021 101 aa5.06□□□□□ -1.6
MSH3-201ENST00000265081 C10orf95Q9H7T3 257 aa5□□□□□ -1.61
MSH3-201ENST00000265081 LCE2BO14633 110 aa4.95□□□□□ -1.62
MSH3-201ENST00000265081 SPRR2GQ9BYE4 73 aa4.93□□□□□ -1.62
MSH3-201ENST00000265081 RNF213Q63HN8 5207 aa4.92□□□□□ -1.62
MSH3-201ENST00000265081 MT1HP80294 61 aa4.91□□□□□ -1.62
MSH3-201ENST00000265081 KRTAP15-1Q3LI76 137 aa4.88□□□□□ -1.63
MSH3-201ENST00000265081 KRTAP19-1Q8IUB9 90 aa4.86□□□□□ -1.63
MSH3-201ENST00000265081 FAT4Q6V0I7 4981 aa4.85□□□□□ -1.63
MSH3-201ENST00000265081 KRTAP23-1A1A580 65 aa4.83□□□□□ -1.64
MSH3-201ENST00000265081 UBR4Q5T4S7 5183 aa4.83□□□□□ -1.64
MSH3-201ENST00000265081 KRTAP9-8Q9BYQ0 159 aa4.82□□□□□ -1.64
MSH3-201ENST00000265081 PP632Q6XCG6 107 aa4.8□□□□□ -1.64
MSH3-201ENST00000265081 MT2AP02795 61 aa4.79□□□□□ -1.64
MSH3-201ENST00000265081 MT1FP04733 61 aa4.77□□□□□ -1.65
MSH3-201ENST00000265081 KRTAP19-8Q3LI54 63 aa4.76□□□□□ -1.65
MSH3-201ENST00000265081 CAMK2N1Q7Z7J9 78 aa4.75□□□□□ -1.65
MSH3-201ENST00000265081 TNP1P09430 55 aa4.67□□□□□ -1.66
MSH3-201ENST00000265081 M0R2T5 61 aa4.65□□□□□ -1.66
MSH3-201ENST00000265081 MT1BP07438 61 aa4.64□□□□□ -1.67
MSH3-201ENST00000265081 PLAC4Q8WY50 150 aa4.63□□□□□ -1.67
MSH3-201ENST00000265081 KRTAP9-3Q9BYQ3 159 aa4.63□□□□□ -1.67
MSH3-201ENST00000265081 KRTAP10-10P60014 251 aa4.62□□□□□ -1.67
MSH3-201ENST00000265081 KRTAP10-5P60370 271 aa4.58□□□□□ -1.68
MSH3-201ENST00000265081 LUZP6Q538Z0 58 aa4.57□□□□□ -1.68
MSH3-201ENST00000265081 MT1XP80297 61 aa4.57□□□□□ -1.68
MSH3-201ENST00000265081 SPRR5A0A1B0GTR4 108 aa4.56□□□□□ -1.68
MSH3-201ENST00000265081 LCE2AQ5TA79 106 aaPredicted RBP4.51□□□□□ -1.69
MSH3-201ENST00000265081 NDUFAF8A1L188 74 aa4.48□□□□□ -1.69
MSH3-201ENST00000265081 LCE3AQ5TA76 89 aa4.48□□□□□ -1.69
MSH3-201ENST00000265081 KRTAP8-1Q8IUC2 63 aa4.48□□□□□ -1.69
MSH3-201ENST00000265081 KRTAP10-7P60409 375 aaPredicted RBP4.36□□□□□ -1.71
MSH3-201ENST00000265081 KRTAP10-12P60413 245 aa4.36□□□□□ -1.71
MSH3-201ENST00000265081 PRO2289Q9P1D8 64 aa4.32□□□□□ -1.72
MSH3-201ENST00000265081 KRTAP12-3P60328 96 aa4.26□□□□□ -1.73
MSH3-201ENST00000265081 USH2AO75445 5202 aa4.21□□□□□ -1.73
MSH3-201ENST00000265081 SSPOA2VEC9 5147 aa4.17□□□□□ -1.74
MSH3-201ENST00000265081 KRTAP19-5Q3LI72 72 aa4.15□□□□□ -1.75
MSH3-201ENST00000265081 KRTAP19-6Q3LI70 58 aa4.09□□□□□ -1.76
MSH3-201ENST00000265081 KRTAP19-7Q3SYF9 63 aa4.08□□□□□ -1.76
MSH3-201ENST00000265081 KRTAP19-4Q3LI73 84 aa4.08□□□□□ -1.76
MSH3-201ENST00000265081 LCE3CQ5T5A8 94 aa4.07□□□□□ -1.76
MSH3-201ENST00000265081 KRTAP4-8A0A0G2JLE6 195 aa4.05□□□□□ -1.76
MSH3-201ENST00000265081 KRTAP4-8Q9BYQ9 185 aa4.05□□□□□ -1.76
MSH3-201ENST00000265081 KMT2DO14686 5537 aa4.02□□□□□ -1.77
MSH3-201ENST00000265081 MT1EP04732 61 aa3.97□□□□□ -1.77
MSH3-201ENST00000265081 MT1LQ93083 61 aa3.94□□□□□ -1.78
MSH3-201ENST00000265081 FSIP2Q5CZC0 6907 aa3.93□□□□□ -1.78
MSH3-201ENST00000265081 KRTAP9-6A8MVA2 160 aa3.92□□□□□ -1.78
MSH3-201ENST00000265081 KRTAP2-3P0C7H8 128 aa3.82□□□□□ -1.8
MSH3-201ENST00000265081 KRTAP2-4Q9BYR9 128 aa3.82□□□□□ -1.8
MSH3-201ENST00000265081 KRTAP2-1Q9BYU5 128 aa3.82□□□□□ -1.8
MSH3-201ENST00000265081 KRTAP4-7Q9BYR0 210 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms