RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 LCA10Q71F78 164 aa8.9□□□□□ -0.98
SDCBP-201ENST00000260130 C20orf166-AS1Q96NR2 134 aa8.89□□□□□ -0.99
SDCBP-201ENST00000260130 CDC42SE1Q9NRR8 79 aa8.89□□□□□ -0.99
SDCBP-201ENST00000260130 A8MUU9 505 aa8.88□□□□□ -0.99
SDCBP-201ENST00000260130 SPTSSBQ8NFR3 76 aa8.86□□□□□ -0.99
SDCBP-201ENST00000260130 KRTAP16-1A8MUX0 517 aa8.85□□□□□ -0.99
SDCBP-201ENST00000260130 DMAC1Q96GE9 116 aa8.83□□□□□ -1
SDCBP-201ENST00000260130 IGKV2-30P06310 120 aa8.8□□□□□ -1
SDCBP-201ENST00000260130 SPINK7P58062 85 aa8.78□□□□□ -1
SDCBP-201ENST00000260130 SEC61GP60059 68 aa8.76□□□□□ -1.01
SDCBP-201ENST00000260130 LCE2AQ5TA79 106 aaPredicted RBP8.76□□□□□ -1.01
SDCBP-201ENST00000260130 KTN1-AS1Q86SY8 53 aa8.76□□□□□ -1.01
SDCBP-201ENST00000260130 A6NN06 94 aa8.74□□□□□ -1.01
SDCBP-201ENST00000260130 KRTAP19-2Q3LHN2 52 aa8.72□□□□□ -1.01
SDCBP-201ENST00000260130 LCE2CQ5TA81 110 aa8.71□□□□□ -1.01
SDCBP-201ENST00000260130 A0A1B0GU69 56 aa8.66□□□□□ -1.02
SDCBP-201ENST00000260130 IGKV2D-30A0A075B6S6 120 aa8.65□□□□□ -1.02
SDCBP-201ENST00000260130 COX6B2Q6YFQ2 88 aa8.62□□□□□ -1.03
SDCBP-201ENST00000260130 C7orf65Q6ZTY9 151 aa8.62□□□□□ -1.03
SDCBP-201ENST00000260130 MT1HP80294 61 aa8.59□□□□□ -1.03
SDCBP-201ENST00000260130 SPATA8Q6RVD6 105 aa8.54□□□□□ -1.04
SDCBP-201ENST00000260130 UQCR11O14957 56 aa8.53□□□□□ -1.04
SDCBP-201ENST00000260130 RBM12B-AS1Q9P1G2 102 aa8.52□□□□□ -1.05
SDCBP-201ENST00000260130 FLGP20930 4061 aaPredicted RBP8.51□□□□□ -1.05
SDCBP-201ENST00000260130 MIR22HGQ0VDD5 57 aa8.49□□□□□ -1.05
SDCBP-201ENST00000260130 M0R2T5 61 aa8.46□□□□□ -1.05
SDCBP-201ENST00000260130 KRTAP10-6P60371 365 aaPredicted RBP8.38□□□□□ -1.07
SDCBP-201ENST00000260130 LORP23490 312 aaPredicted RBP8.36□□□□□ -1.07
SDCBP-201ENST00000260130 KRTAP9-2Q9BYQ4 174 aa8.31□□□□□ -1.08
SDCBP-201ENST00000260130 PRAC1Q96KF2 57 aa8.28□□□□□ -1.08
SDCBP-201ENST00000260130 ADM2Q7Z4H4 148 aa8.25□□□□□ -1.09
SDCBP-201ENST00000260130 LCE2DQ5TA82 110 aaPredicted RBP8.22□□□□□ -1.09
SDCBP-201ENST00000260130 KRTAP3-1Q9BYR8 98 aa8.22□□□□□ -1.09
SDCBP-201ENST00000260130 H1FX-AS1Q4G0G2 97 aa8.18□□□□□ -1.1
SDCBP-201ENST00000260130 KRTAP9-8Q9BYQ0 159 aa8.17□□□□□ -1.1
SDCBP-201ENST00000260130 A0A1B0GU33 70 aa8.17□□□□□ -1.1
SDCBP-201ENST00000260130 H0YAA0 97 aa8.17□□□□□ -1.1
SDCBP-201ENST00000260130 LINC01554Q52M75 96 aa8.11□□□□□ -1.11
SDCBP-201ENST00000260130 CSAG1Q6PB30 78 aa8.08□□□□□ -1.12
SDCBP-201ENST00000260130 MT2AP02795 61 aa8.07□□□□□ -1.12
SDCBP-201ENST00000260130 FSIP2Q5CZC0 6907 aa8.03□□□□□ -1.12
SDCBP-201ENST00000260130 MT1FP04733 61 aa8.01□□□□□ -1.13
SDCBP-201ENST00000260130 KRTAP10-10P60014 251 aa8□□□□□ -1.13
SDCBP-201ENST00000260130 K7ERS5 55 aa7.99□□□□□ -1.13
SDCBP-201ENST00000260130 S4R3F8 94 aa7.95□□□□□ -1.14
SDCBP-201ENST00000260130 KRTAP9-6A0A140TA67 174 aa7.93□□□□□ -1.14
SDCBP-201ENST00000260130 KRTAP9-3Q9BYQ3 159 aa7.9□□□□□ -1.14
SDCBP-201ENST00000260130 CRCT1Q9UGL9 99 aa7.9□□□□□ -1.15
SDCBP-201ENST00000260130 KRTAP25-1Q3LHN0 102 aa7.89□□□□□ -1.15
SDCBP-201ENST00000260130 KRTAP3-3Q9BYR6 98 aa7.88□□□□□ -1.15
SDCBP-201ENST00000260130 USH2AO75445 5202 aa7.82□□□□□ -1.16
SDCBP-201ENST00000260130 LCE2BO14633 110 aa7.81□□□□□ -1.16
SDCBP-201ENST00000260130 KRTAP3-2Q9BYR7 98 aa7.78□□□□□ -1.16
SDCBP-201ENST00000260130 ROMO1P60602 79 aa7.77□□□□□ -1.17
SDCBP-201ENST00000260130 KRTAP13-4Q3LI77 160 aa7.75□□□□□ -1.17
SDCBP-201ENST00000260130 A0A0D9SG42 100 aa7.71□□□□□ -1.17
SDCBP-201ENST00000260130 SSPOA2VEC9 5147 aa7.7□□□□□ -1.18
SDCBP-201ENST00000260130 P0C880 135 aa7.67□□□□□ -1.18
SDCBP-201ENST00000260130 CRIPTQ9P021 101 aa7.66□□□□□ -1.18
SDCBP-201ENST00000260130 KRTAP19-1Q8IUB9 90 aa7.6□□□□□ -1.19
SDCBP-201ENST00000260130 SPRR2GQ9BYE4 73 aa7.55□□□□□ -1.2
SDCBP-201ENST00000260130 M0QZ58 72 aa7.53□□□□□ -1.2
SDCBP-201ENST00000260130 KRTAP12-2P59991 146 aa7.53□□□□□ -1.2
SDCBP-201ENST00000260130 KRTAP12-1P59990 96 aa7.49□□□□□ -1.21
SDCBP-201ENST00000260130 KRTAP19-6Q3LI70 58 aa7.49□□□□□ -1.21
SDCBP-201ENST00000260130 FCGBPQ9Y6R7 5405 aaPredicted RBP7.49□□□□□ -1.21
SDCBP-201ENST00000260130 SPINT4Q6UDR6 99 aa7.47□□□□□ -1.21
SDCBP-201ENST00000260130 KRTAP19-8Q3LI54 63 aa7.46□□□□□ -1.22
SDCBP-201ENST00000260130 MT1BP07438 61 aa7.42□□□□□ -1.22
SDCBP-201ENST00000260130 H3BS24 57 aa7.4□□□□□ -1.22
SDCBP-201ENST00000260130 C10orf95Q9H7T3 257 aa7.4□□□□□ -1.22
SDCBP-201ENST00000260130 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.33□□□□□ -1.24
SDCBP-201ENST00000260130 R4GN34 69 aa7.31□□□□□ -1.24
SDCBP-201ENST00000260130 MACF1Q9UPN3 7388 aaKnown RBP7.29□□□□□ -1.24
SDCBP-201ENST00000260130 KRTAP10-5P60370 271 aa7.2□□□□□ -1.26
SDCBP-201ENST00000260130 KRTAP15-1Q3LI76 137 aa7.19□□□□□ -1.26
SDCBP-201ENST00000260130 KRTAP9-7A8MTY7 169 aa7.17□□□□□ -1.26
SDCBP-201ENST00000260130 SYNE2Q8WXH0 6885 aaKnown RBP7.16□□□□□ -1.26
SDCBP-201ENST00000260130 PLAC4Q8WY50 150 aa7.15□□□□□ -1.26
SDCBP-201ENST00000260130 PRO2289Q9P1D8 64 aa7.04□□□□□ -1.28
SDCBP-201ENST00000260130 MT1XP80297 61 aa7.02□□□□□ -1.29
SDCBP-201ENST00000260130 NDUFAF8A1L188 74 aa7□□□□□ -1.29
SDCBP-201ENST00000260130 KRTAP6-3Q3LI67 103 aa6.95□□□□□ -1.3
SDCBP-201ENST00000260130 CAMK2N1Q7Z7J9 78 aa6.93□□□□□ -1.3
SDCBP-201ENST00000260130 PP632Q6XCG6 107 aa6.91□□□□□ -1.3
SDCBP-201ENST00000260130 KMT2DO14686 5537 aa6.78□□□□□ -1.32
SDCBP-201ENST00000260130 KRTAP5-9P26371 169 aa6.74□□□□□ -1.33
SDCBP-201ENST00000260130 MUC12Q9UKN1 5478 aa6.72□□□□□ -1.33
SDCBP-201ENST00000260130 TNP1P09430 55 aa6.71□□□□□ -1.34
SDCBP-201ENST00000260130 KRTAP10-7P60409 375 aaPredicted RBP6.71□□□□□ -1.34
SDCBP-201ENST00000260130 KRTAP23-1A1A580 65 aa6.68□□□□□ -1.34
SDCBP-201ENST00000260130 KRTAP10-12P60413 245 aa6.67□□□□□ -1.34
SDCBP-201ENST00000260130 NEBP20929 6669 aa6.67□□□□□ -1.34
SDCBP-201ENST00000260130 KRTAP8-1Q8IUC2 63 aa6.66□□□□□ -1.34
SDCBP-201ENST00000260130 KRTAP4-8A0A0G2JLE6 195 aa6.64□□□□□ -1.35
SDCBP-201ENST00000260130 KRTAP4-8Q9BYQ9 185 aa6.64□□□□□ -1.35
SDCBP-201ENST00000260130 LUZP6Q538Z0 58 aa6.62□□□□□ -1.35
SDCBP-201ENST00000260130 SPRR2FQ96RM1 72 aa6.6□□□□□ -1.35
SDCBP-201ENST00000260130 MDN1Q9NU22 5596 aa6.59□□□□□ -1.35
SDCBP-201ENST00000260130 SPRR2EP22531 72 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms