RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 LRP2P98164 4655 aa9.82□□□□□ -0.84
YBX3-201ENST00000228251 UQCR11O14957 56 aa9.8□□□□□ -0.84
YBX3-201ENST00000228251 ABCA13Q86UQ4 5058 aa9.8□□□□□ -0.84
YBX3-201ENST00000228251 PMAIP1Q13794 54 aa9.79□□□□□ -0.84
YBX3-201ENST00000228251 A6NN06 94 aa9.78□□□□□ -0.84
YBX3-201ENST00000228251 SEC61GP60059 68 aa9.75□□□□□ -0.85
YBX3-201ENST00000228251 MIR22HGQ0VDD5 57 aa9.75□□□□□ -0.85
YBX3-201ENST00000228251 KRTAP3-3Q9BYR6 98 aa9.75□□□□□ -0.85
YBX3-201ENST00000228251 LPAP08519 4548 aa9.74□□□□□ -0.85
YBX3-201ENST00000228251 H0YAA0 97 aa9.61□□□□□ -0.87
YBX3-201ENST00000228251 S4R3F8 94 aa9.61□□□□□ -0.87
YBX3-201ENST00000228251 J3QL48 77 aa9.6□□□□□ -0.87
YBX3-201ENST00000228251 H1FX-AS1Q4G0G2 97 aa9.6□□□□□ -0.87
YBX3-201ENST00000228251 A0A1B0GU33 70 aa9.59□□□□□ -0.87
YBX3-201ENST00000228251 KTN1-AS1Q86SY8 53 aa9.56□□□□□ -0.88
YBX3-201ENST00000228251 KRTAP10-6P60371 365 aaPredicted RBP9.55□□□□□ -0.88
YBX3-201ENST00000228251 MUC17Q685J3 4493 aa9.53□□□□□ -0.88
YBX3-201ENST00000228251 KRTAP3-2Q9BYR7 98 aa9.52□□□□□ -0.88
YBX3-201ENST00000228251 RBM12B-AS1Q9P1G2 102 aa9.47□□□□□ -0.89
YBX3-201ENST00000228251 PCLOQ9Y6V0 5065 aa9.47□□□□□ -0.89
YBX3-201ENST00000228251 SEC61BP60468 96 aaKnown RBP9.44□□□□□ -0.9
YBX3-201ENST00000228251 KRTAP4-1Q9BYQ7 146 aa9.39□□□□□ -0.91
YBX3-201ENST00000228251 KRTAP13-4Q3LI77 160 aa9.35□□□□□ -0.91
YBX3-201ENST00000228251 P0C880 135 aa9.35□□□□□ -0.91
YBX3-201ENST00000228251 CSAG1Q6PB30 78 aa9.32□□□□□ -0.92
YBX3-201ENST00000228251 KRTAP19-2Q3LHN2 52 aa9.28□□□□□ -0.92
YBX3-201ENST00000228251 HERC1Q15751 4861 aa9.27□□□□□ -0.92
YBX3-201ENST00000228251 ADM2Q7Z4H4 148 aa9.27□□□□□ -0.93
YBX3-201ENST00000228251 PRAC1Q96KF2 57 aa9.19□□□□□ -0.94
YBX3-201ENST00000228251 HMCN2Q8NDA2 5059 aa9.17□□□□□ -0.94
YBX3-201ENST00000228251 K7ERS5 55 aa9.11□□□□□ -0.95
YBX3-201ENST00000228251 A0A0D9SG42 100 aa9.1□□□□□ -0.95
YBX3-201ENST00000228251 M0QZ58 72 aa9.07□□□□□ -0.96
YBX3-201ENST00000228251 FLGP20930 4061 aaPredicted RBP9.03□□□□□ -0.96
YBX3-201ENST00000228251 KRTAP12-1P59990 96 aa8.99□□□□□ -0.97
YBX3-201ENST00000228251 KRTAP12-2P59991 146 aa8.99□□□□□ -0.97
YBX3-201ENST00000228251 MUC2Q02817 5179 aa8.99□□□□□ -0.97
YBX3-201ENST00000228251 ROMO1P60602 79 aa8.92□□□□□ -0.98
YBX3-201ENST00000228251 LORP23490 312 aaPredicted RBP8.91□□□□□ -0.98
YBX3-201ENST00000228251 KRTAP25-1Q3LHN0 102 aa8.84□□□□□ -0.99
YBX3-201ENST00000228251 R4GN34 69 aa8.84□□□□□ -0.99
YBX3-201ENST00000228251 LCE2CQ5TA81 110 aa8.83□□□□□ -1
YBX3-201ENST00000228251 SPINT4Q6UDR6 99 aa8.82□□□□□ -1
YBX3-201ENST00000228251 LINC01554Q52M75 96 aa8.77□□□□□ -1.01
YBX3-201ENST00000228251 UBR4Q5T4S7 5183 aa8.73□□□□□ -1.01
YBX3-201ENST00000228251 CRIPTQ9P021 101 aa8.71□□□□□ -1.01
YBX3-201ENST00000228251 RNF213Q63HN8 5207 aa8.69□□□□□ -1.02
YBX3-201ENST00000228251 FAT4Q6V0I7 4981 aa8.64□□□□□ -1.03
YBX3-201ENST00000228251 MT1HP80294 61 aa8.56□□□□□ -1.04
YBX3-201ENST00000228251 C10orf95Q9H7T3 257 aa8.54□□□□□ -1.04
YBX3-201ENST00000228251 H3BS24 57 aa8.5□□□□□ -1.05
YBX3-201ENST00000228251 SPRR2GQ9BYE4 73 aa8.41□□□□□ -1.06
YBX3-201ENST00000228251 KRTAP19-1Q8IUB9 90 aa8.38□□□□□ -1.07
YBX3-201ENST00000228251 M0R2T5 61 aa8.35□□□□□ -1.07
YBX3-201ENST00000228251 MT2AP02795 61 aa8.34□□□□□ -1.07
YBX3-201ENST00000228251 KRTAP9-8Q9BYQ0 159 aa8.34□□□□□ -1.07
YBX3-201ENST00000228251 CAMK2N1Q7Z7J9 78 aa8.32□□□□□ -1.08
YBX3-201ENST00000228251 MT1FP04733 61 aa8.31□□□□□ -1.08
YBX3-201ENST00000228251 LCE2DQ5TA82 110 aaPredicted RBP8.22□□□□□ -1.09
YBX3-201ENST00000228251 KRTAP10-10P60014 251 aa8.2□□□□□ -1.1
YBX3-201ENST00000228251 KRTAP19-8Q3LI54 63 aa8.12□□□□□ -1.11
YBX3-201ENST00000228251 PLAC4Q8WY50 150 aa8.1□□□□□ -1.11
YBX3-201ENST00000228251 PP632Q6XCG6 107 aa8.07□□□□□ -1.12
YBX3-201ENST00000228251 LCE2AQ5TA79 106 aaPredicted RBP8.03□□□□□ -1.12
YBX3-201ENST00000228251 TNP1P09430 55 aa8.02□□□□□ -1.13
YBX3-201ENST00000228251 KRTAP15-1Q3LI76 137 aa8.02□□□□□ -1.13
YBX3-201ENST00000228251 KRTAP9-3Q9BYQ3 159 aa8.02□□□□□ -1.13
YBX3-201ENST00000228251 MT1BP07438 61 aa8□□□□□ -1.13
YBX3-201ENST00000228251 KRTAP23-1A1A580 65 aa7.99□□□□□ -1.13
YBX3-201ENST00000228251 A0A0A0MQY5 61 aa7.94□□□□□ -1.14
YBX3-201ENST00000228251 MT1XP80297 61 aa7.84□□□□□ -1.15
YBX3-201ENST00000228251 KRTAP10-5P60370 271 aa7.84□□□□□ -1.15
YBX3-201ENST00000228251 LCE2BO14633 110 aa7.72□□□□□ -1.17
YBX3-201ENST00000228251 LCE3AQ5TA76 89 aa7.69□□□□□ -1.18
YBX3-201ENST00000228251 KRTAP8-1Q8IUC2 63 aa7.58□□□□□ -1.2
YBX3-201ENST00000228251 KRTAP10-7P60409 375 aaPredicted RBP7.55□□□□□ -1.2
YBX3-201ENST00000228251 NDUFAF8A1L188 74 aa7.53□□□□□ -1.2
YBX3-201ENST00000228251 PRO2289Q9P1D8 64 aa7.53□□□□□ -1.2
YBX3-201ENST00000228251 KRTAP10-12P60413 245 aa7.51□□□□□ -1.21
YBX3-201ENST00000228251 SPRR5A0A1B0GTR4 108 aa7.48□□□□□ -1.21
YBX3-201ENST00000228251 USH2AO75445 5202 aa7.44□□□□□ -1.22
YBX3-201ENST00000228251 KRTAP12-3P60328 96 aa7.34□□□□□ -1.23
YBX3-201ENST00000228251 LUZP6Q538Z0 58 aa7.24□□□□□ -1.25
YBX3-201ENST00000228251 SSPOA2VEC9 5147 aa7.22□□□□□ -1.25
YBX3-201ENST00000228251 KRTAP19-5Q3LI72 72 aa7.16□□□□□ -1.26
YBX3-201ENST00000228251 KRTAP4-8A0A0G2JLE6 195 aa7.13□□□□□ -1.27
YBX3-201ENST00000228251 KRTAP4-8Q9BYQ9 185 aa7.13□□□□□ -1.27
YBX3-201ENST00000228251 KMT2DO14686 5537 aa7.1□□□□□ -1.27
YBX3-201ENST00000228251 KRTAP19-6Q3LI70 58 aa7.09□□□□□ -1.27
YBX3-201ENST00000228251 FSIP2Q5CZC0 6907 aa7.05□□□□□ -1.28
YBX3-201ENST00000228251 KRTAP9-2Q9BYQ4 174 aa7.04□□□□□ -1.28
YBX3-201ENST00000228251 KRTAP19-7Q3SYF9 63 aa7.01□□□□□ -1.29
YBX3-201ENST00000228251 LCE3CQ5T5A8 94 aa6.91□□□□□ -1.3
YBX3-201ENST00000228251 MT1EP04732 61 aa6.82□□□□□ -1.32
YBX3-201ENST00000228251 FCGBPQ9Y6R7 5405 aaPredicted RBP6.81□□□□□ -1.32
YBX3-201ENST00000228251 CRCT1Q9UGL9 99 aa6.79□□□□□ -1.32
YBX3-201ENST00000228251 KRTAP19-4Q3LI73 84 aa6.77□□□□□ -1.33
YBX3-201ENST00000228251 MT1LQ93083 61 aa6.76□□□□□ -1.33
YBX3-201ENST00000228251 KRTAP9-6A8MVA2 160 aa6.66□□□□□ -1.34
YBX3-201ENST00000228251 KRTAP4-7Q9BYR0 210 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms