RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 MT1HL1P0DM35 61 aa11.72□□□□□ -0.53
CCDC9-201ENST00000221922 H0YAA0 97 aa11.66□□□□□ -0.54
CCDC9-201ENST00000221922 COX6B2Q6YFQ2 88 aa11.66□□□□□ -0.54
CCDC9-201ENST00000221922 DMBT1Q9UGM3 2413 aaPredicted RBP11.64□□□□□ -0.55
CCDC9-201ENST00000221922 RPL37P61927 97 aaKnown RBP11.63□□□□□ -0.55
CCDC9-201ENST00000221922 A0A1B0GU33 70 aa11.6□□□□□ -0.55
CCDC9-201ENST00000221922 XP32Q5T750 250 aa11.58□□□□□ -0.56
CCDC9-201ENST00000221922 MYCBP2O75592 4640 aa11.58□□□□□ -0.56
CCDC9-201ENST00000221922 H1FX-AS1Q4G0G2 97 aa11.57□□□□□ -0.56
CCDC9-201ENST00000221922 HERC2O95714 4834 aa11.56□□□□□ -0.56
CCDC9-201ENST00000221922 KRTAP4-5Q9BYR2 181 aa11.48□□□□□ -0.57
CCDC9-201ENST00000221922 ABCA13Q86UQ4 5058 aa11.47□□□□□ -0.57
CCDC9-201ENST00000221922 LINC01554Q52M75 96 aa11.44□□□□□ -0.58
CCDC9-201ENST00000221922 CSAG1Q6PB30 78 aa11.44□□□□□ -0.58
CCDC9-201ENST00000221922 TPRXLQ17RH7 258 aa11.39□□□□□ -0.59
CCDC9-201ENST00000221922 KRTAP3-3Q9BYR6 98 aa11.34□□□□□ -0.59
CCDC9-201ENST00000221922 KRTAP10-6P60371 365 aaPredicted RBP11.26□□□□□ -0.61
CCDC9-201ENST00000221922 S4R3F8 94 aa11.26□□□□□ -0.61
CCDC9-201ENST00000221922 PCLOQ9Y6V0 5065 aa11.23□□□□□ -0.61
CCDC9-201ENST00000221922 K7ERS5 55 aa11.23□□□□□ -0.61
CCDC9-201ENST00000221922 KRTAP3-2Q9BYR7 98 aa11.19□□□□□ -0.62
CCDC9-201ENST00000221922 KRTAP25-1Q3LHN0 102 aa11.18□□□□□ -0.62
CCDC9-201ENST00000221922 KRTAP13-4Q3LI77 160 aa11.11□□□□□ -0.63
CCDC9-201ENST00000221922 LRP2P98164 4655 aa11.1□□□□□ -0.63
CCDC9-201ENST00000221922 J3QL48 77 aa11.08□□□□□ -0.64
CCDC9-201ENST00000221922 LPAP08519 4548 aa11.02□□□□□ -0.64
CCDC9-201ENST00000221922 ROMO1P60602 79 aa11□□□□□ -0.65
CCDC9-201ENST00000221922 P0C880 135 aa10.99□□□□□ -0.65
CCDC9-201ENST00000221922 A0A0D9SG42 100 aa10.96□□□□□ -0.65
CCDC9-201ENST00000221922 SEC61BP60468 96 aaKnown RBP10.96□□□□□ -0.65
CCDC9-201ENST00000221922 CRIPTQ9P021 101 aa10.9□□□□□ -0.66
CCDC9-201ENST00000221922 HERC1Q15751 4861 aa10.87□□□□□ -0.67
CCDC9-201ENST00000221922 KRTAP12-2P59991 146 aa10.75□□□□□ -0.69
CCDC9-201ENST00000221922 MUC17Q685J3 4493 aa10.72□□□□□ -0.69
CCDC9-201ENST00000221922 KRTAP4-1Q9BYQ7 146 aa10.72□□□□□ -0.69
CCDC9-201ENST00000221922 KRTAP12-1P59990 96 aa10.7□□□□□ -0.7
CCDC9-201ENST00000221922 M0QZ58 72 aa10.7□□□□□ -0.7
CCDC9-201ENST00000221922 HMCN2Q8NDA2 5059 aa10.65□□□□□ -0.7
CCDC9-201ENST00000221922 SPINT4Q6UDR6 99 aa10.61□□□□□ -0.71
CCDC9-201ENST00000221922 C10orf95Q9H7T3 257 aa10.55□□□□□ -0.72
CCDC9-201ENST00000221922 KRTAP19-2Q3LHN2 52 aa10.54□□□□□ -0.72
CCDC9-201ENST00000221922 R4GN34 69 aa10.42□□□□□ -0.74
CCDC9-201ENST00000221922 H3BS24 57 aa10.38□□□□□ -0.75
CCDC9-201ENST00000221922 UBR4Q5T4S7 5183 aa10.26□□□□□ -0.77
CCDC9-201ENST00000221922 FLGP20930 4061 aaPredicted RBP10.24□□□□□ -0.77
CCDC9-201ENST00000221922 LORP23490 312 aaPredicted RBP10.23□□□□□ -0.77
CCDC9-201ENST00000221922 MUC2Q02817 5179 aa10.22□□□□□ -0.77
CCDC9-201ENST00000221922 KRTAP15-1Q3LI76 137 aa10.22□□□□□ -0.77
CCDC9-201ENST00000221922 RNF213Q63HN8 5207 aa10.15□□□□□ -0.79
CCDC9-201ENST00000221922 LCE2CQ5TA81 110 aa10.07□□□□□ -0.8
CCDC9-201ENST00000221922 NDUFAF8A1L188 74 aa9.89□□□□□ -0.83
CCDC9-201ENST00000221922 CAMK2N1Q7Z7J9 78 aa9.86□□□□□ -0.83
CCDC9-201ENST00000221922 MT1HP80294 61 aa9.83□□□□□ -0.84
CCDC9-201ENST00000221922 FAT4Q6V0I7 4981 aa9.77□□□□□ -0.84
CCDC9-201ENST00000221922 PP632Q6XCG6 107 aa9.77□□□□□ -0.85
CCDC9-201ENST00000221922 M0R2T5 61 aa9.76□□□□□ -0.85
CCDC9-201ENST00000221922 PLAC4Q8WY50 150 aa9.75□□□□□ -0.85
CCDC9-201ENST00000221922 SPRR2GQ9BYE4 73 aa9.64□□□□□ -0.87
CCDC9-201ENST00000221922 MT2AP02795 61 aa9.57□□□□□ -0.88
CCDC9-201ENST00000221922 KRTAP19-1Q8IUB9 90 aa9.57□□□□□ -0.88
CCDC9-201ENST00000221922 KRTAP9-8Q9BYQ0 159 aa9.54□□□□□ -0.88
CCDC9-201ENST00000221922 MT1FP04733 61 aa9.53□□□□□ -0.88
CCDC9-201ENST00000221922 TNP1P09430 55 aa9.51□□□□□ -0.89
CCDC9-201ENST00000221922 KRTAP23-1A1A580 65 aa9.5□□□□□ -0.89
CCDC9-201ENST00000221922 KRTAP10-10P60014 251 aa9.49□□□□□ -0.89
CCDC9-201ENST00000221922 KRTAP19-8Q3LI54 63 aa9.3□□□□□ -0.92
CCDC9-201ENST00000221922 LUZP6Q538Z0 58 aa9.27□□□□□ -0.93
CCDC9-201ENST00000221922 LCE2AQ5TA79 106 aaPredicted RBP9.24□□□□□ -0.93
CCDC9-201ENST00000221922 KRTAP9-3Q9BYQ3 159 aa9.17□□□□□ -0.94
CCDC9-201ENST00000221922 SPRR5A0A1B0GTR4 108 aa9.15□□□□□ -0.94
CCDC9-201ENST00000221922 MT1BP07438 61 aa9.14□□□□□ -0.95
CCDC9-201ENST00000221922 LCE3AQ5TA76 89 aa8.99□□□□□ -0.97
CCDC9-201ENST00000221922 KRTAP10-5P60370 271 aa8.96□□□□□ -0.97
CCDC9-201ENST00000221922 MT1XP80297 61 aa8.96□□□□□ -0.97
CCDC9-201ENST00000221922 LCE2BO14633 110 aa8.83□□□□□ -1
CCDC9-201ENST00000221922 KRTAP8-1Q8IUC2 63 aa8.83□□□□□ -1
CCDC9-201ENST00000221922 A0A0A0MQY5 61 aa8.82□□□□□ -1
CCDC9-201ENST00000221922 PRO2289Q9P1D8 64 aa8.79□□□□□ -1
CCDC9-201ENST00000221922 KRTAP10-12P60413 245 aa8.74□□□□□ -1.01
CCDC9-201ENST00000221922 KRTAP10-7P60409 375 aaPredicted RBP8.64□□□□□ -1.03
CCDC9-201ENST00000221922 KRTAP12-3P60328 96 aa8.58□□□□□ -1.04
CCDC9-201ENST00000221922 USH2AO75445 5202 aa8.56□□□□□ -1.04
CCDC9-201ENST00000221922 LCE2DQ5TA82 110 aaPredicted RBP8.45□□□□□ -1.06
CCDC9-201ENST00000221922 FSIP2Q5CZC0 6907 aa8.44□□□□□ -1.06
CCDC9-201ENST00000221922 SSPOA2VEC9 5147 aa8.33□□□□□ -1.08
CCDC9-201ENST00000221922 KRTAP9-2Q9BYQ4 174 aa8.33□□□□□ -1.08
CCDC9-201ENST00000221922 KRTAP19-5Q3LI72 72 aa8.26□□□□□ -1.09
CCDC9-201ENST00000221922 KRTAP4-8A0A0G2JLE6 195 aa8.16□□□□□ -1.1
CCDC9-201ENST00000221922 KRTAP4-8Q9BYQ9 185 aa8.16□□□□□ -1.1
CCDC9-201ENST00000221922 KRTAP19-6Q3LI70 58 aa8.15□□□□□ -1.1
CCDC9-201ENST00000221922 LCE3CQ5T5A8 94 aa8.09□□□□□ -1.11
CCDC9-201ENST00000221922 INE1O15225 51 aa8.05□□□□□ -1.12
CCDC9-201ENST00000221922 KMT2DO14686 5537 aa8.04□□□□□ -1.12
CCDC9-201ENST00000221922 FCGBPQ9Y6R7 5405 aaPredicted RBP8.01□□□□□ -1.13
CCDC9-201ENST00000221922 KRTAP19-7Q3SYF9 63 aa7.99□□□□□ -1.13
CCDC9-201ENST00000221922 CRCT1Q9UGL9 99 aa7.98□□□□□ -1.13
CCDC9-201ENST00000221922 KRTAP19-4Q3LI73 84 aa7.9□□□□□ -1.15
CCDC9-201ENST00000221922 MT1EP04732 61 aa7.82□□□□□ -1.16
CCDC9-201ENST00000221922 KRTAP9-6A8MVA2 160 aa7.79□□□□□ -1.16
CCDC9-201ENST00000221922 KRTAP9-6A0A140TA67 174 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms