RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 KRTAP15-1Q3LI76 137 aa7.85□□□□□ -1.15
PTPRA-201ENST00000216877 KRTAP3-1Q9BYR8 98 aa7.85□□□□□ -1.15
PTPRA-201ENST00000216877 RYR3Q15413 4870 aa7.83□□□□□ -1.16
PTPRA-201ENST00000216877 APOBP04114 4563 aaKnown RBP7.8□□□□□ -1.16
PTPRA-201ENST00000216877 KRTAP13-4Q3LI77 160 aa7.75□□□□□ -1.17
PTPRA-201ENST00000216877 FAT3Q8TDW7 4589 aa7.75□□□□□ -1.17
PTPRA-201ENST00000216877 DYNC1H1Q14204 4646 aaKnown RBP7.72□□□□□ -1.17
PTPRA-201ENST00000216877 S4R3F8 94 aa7.7□□□□□ -1.18
PTPRA-201ENST00000216877 KRTAP1-4P0C5Y4 121 aa7.65□□□□□ -1.18
PTPRA-201ENST00000216877 KRTAP21-3Q3LHN1 58 aa7.62□□□□□ -1.19
PTPRA-201ENST00000216877 TNXBP22105 4242 aa7.61□□□□□ -1.19
PTPRA-201ENST00000216877 KRTAP12-2P59991 146 aa7.61□□□□□ -1.19
PTPRA-201ENST00000216877 KRTAP10-6P60371 365 aaPredicted RBP7.6□□□□□ -1.19
PTPRA-201ENST00000216877 HSPG2P98160 4391 aa7.59□□□□□ -1.19
PTPRA-201ENST00000216877 Q5VSD8 79 aa7.57□□□□□ -1.2
PTPRA-201ENST00000216877 J3QL48 77 aa7.56□□□□□ -1.2
PTPRA-201ENST00000216877 PLAC4Q8WY50 150 aa7.46□□□□□ -1.21
PTPRA-201ENST00000216877 KRTAP3-2Q9BYR7 98 aa7.44□□□□□ -1.22
PTPRA-201ENST00000216877 KRTAP12-1P59990 96 aa7.42□□□□□ -1.22
PTPRA-201ENST00000216877 EPPK1P58107 5090 aaKnown RBP7.4□□□□□ -1.22
PTPRA-201ENST00000216877 KRTAP3-3Q9BYR6 98 aa7.39□□□□□ -1.23
PTPRA-201ENST00000216877 FAT1Q14517 4588 aa7.39□□□□□ -1.23
PTPRA-201ENST00000216877 KRTAP10-8P60410 259 aa7.36□□□□□ -1.23
PTPRA-201ENST00000216877 XP32Q5T750 250 aa7.35□□□□□ -1.23
PTPRA-201ENST00000216877 SEC61BP60468 96 aaKnown RBP7.32□□□□□ -1.24
PTPRA-201ENST00000216877 RYR1P21817 5038 aa7.29□□□□□ -1.24
PTPRA-201ENST00000216877 M0QZ58 72 aa7.27□□□□□ -1.25
PTPRA-201ENST00000216877 RPS29P62273 56 aaKnown RBP7.25□□□□□ -1.25
PTPRA-201ENST00000216877 LRP1Q07954 4544 aaKnown RBP7.22□□□□□ -1.25
PTPRA-201ENST00000216877 KRTAP17-1Q9BYP8 105 aa7.2□□□□□ -1.26
PTPRA-201ENST00000216877 R4GN34 69 aa7.2□□□□□ -1.26
PTPRA-201ENST00000216877 KRTAP10-4P60372 401 aaPredicted RBP7.18□□□□□ -1.26
PTPRA-201ENST00000216877 MYCBP2O75592 4640 aa7.18□□□□□ -1.26
PTPRA-201ENST00000216877 A0A1B0GVY2 172 aa7.17□□□□□ -1.26
PTPRA-201ENST00000216877 ABCA13Q86UQ4 5058 aa7.1□□□□□ -1.27
PTPRA-201ENST00000216877 LPAP08519 4548 aa7.07□□□□□ -1.28
PTPRA-201ENST00000216877 CAMK2N1Q7Z7J9 78 aa7.06□□□□□ -1.28
PTPRA-201ENST00000216877 KIAA1109Q2LD37 5005 aa7□□□□□ -1.29
PTPRA-201ENST00000216877 M0R2T5 61 aa6.9□□□□□ -1.3
PTPRA-201ENST00000216877 KRTAP4-5Q9BYR2 181 aa6.9□□□□□ -1.31
PTPRA-201ENST00000216877 HERC2O95714 4834 aa6.88□□□□□ -1.31
PTPRA-201ENST00000216877 MUC17Q685J3 4493 aa6.82□□□□□ -1.32
PTPRA-201ENST00000216877 PP632Q6XCG6 107 aa6.82□□□□□ -1.32
PTPRA-201ENST00000216877 LORP23490 312 aaPredicted RBP6.78□□□□□ -1.32
PTPRA-201ENST00000216877 PCLOQ9Y6V0 5065 aa6.77□□□□□ -1.33
PTPRA-201ENST00000216877 BIRC6Q9NR09 4857 aa6.76□□□□□ -1.33
PTPRA-201ENST00000216877 MT1HL1P0DM35 61 aa6.7□□□□□ -1.34
PTPRA-201ENST00000216877 LRP2P98164 4655 aa6.67□□□□□ -1.34
PTPRA-201ENST00000216877 TNP1P09430 55 aa6.63□□□□□ -1.35
PTPRA-201ENST00000216877 FLGP20930 4061 aaPredicted RBP6.63□□□□□ -1.35
PTPRA-201ENST00000216877 PRO2289Q9P1D8 64 aa6.6□□□□□ -1.35
PTPRA-201ENST00000216877 HMCN2Q8NDA2 5059 aa6.53□□□□□ -1.36
PTPRA-201ENST00000216877 HERC1Q15751 4861 aa6.51□□□□□ -1.37
PTPRA-201ENST00000216877 MUC2Q02817 5179 aa6.43□□□□□ -1.38
PTPRA-201ENST00000216877 SPRR5A0A1B0GTR4 108 aa6.31□□□□□ -1.4
PTPRA-201ENST00000216877 INE1O15225 51 aa6.31□□□□□ -1.4
PTPRA-201ENST00000216877 KRTAP19-2Q3LHN2 52 aa6.29□□□□□ -1.4
PTPRA-201ENST00000216877 KRTAP10-10P60014 251 aa6.24□□□□□ -1.41
PTPRA-201ENST00000216877 KRTAP4-1Q9BYQ7 146 aa6.2□□□□□ -1.42
PTPRA-201ENST00000216877 LCE3AQ5TA76 89 aa6.13□□□□□ -1.43
PTPRA-201ENST00000216877 UBR4Q5T4S7 5183 aa6.11□□□□□ -1.43
PTPRA-201ENST00000216877 KRTAP23-1A1A580 65 aa6.08□□□□□ -1.44
PTPRA-201ENST00000216877 FAT4Q6V0I7 4981 aa6.06□□□□□ -1.44
PTPRA-201ENST00000216877 RNF213Q63HN8 5207 aa6.03□□□□□ -1.44
PTPRA-201ENST00000216877 LCE2CQ5TA81 110 aa5.87□□□□□ -1.47
PTPRA-201ENST00000216877 KRTAP12-3P60328 96 aa5.81□□□□□ -1.48
PTPRA-201ENST00000216877 FSIP2Q5CZC0 6907 aa5.79□□□□□ -1.48
PTPRA-201ENST00000216877 KRTAP8-1Q8IUC2 63 aa5.7□□□□□ -1.5
PTPRA-201ENST00000216877 MT1HP80294 61 aa5.69□□□□□ -1.5
PTPRA-201ENST00000216877 KRTAP10-12P60413 245 aa5.65□□□□□ -1.51
PTPRA-201ENST00000216877 KRTAP19-1Q8IUB9 90 aa5.62□□□□□ -1.51
PTPRA-201ENST00000216877 MT1FP04733 61 aa5.58□□□□□ -1.52
PTPRA-201ENST00000216877 SPRR2GQ9BYE4 73 aa5.58□□□□□ -1.52
PTPRA-201ENST00000216877 MT2AP02795 61 aa5.57□□□□□ -1.52
PTPRA-201ENST00000216877 KRTAP9-8Q9BYQ0 159 aa5.45□□□□□ -1.54
PTPRA-201ENST00000216877 KRTAP10-7P60409 375 aaPredicted RBP5.43□□□□□ -1.54
PTPRA-201ENST00000216877 OBSCNQ5VST9 7968 aa5.39□□□□□ -1.55
PTPRA-201ENST00000216877 LCE3CQ5T5A8 94 aa5.38□□□□□ -1.55
PTPRA-201ENST00000216877 KRTAP10-5P60370 271 aa5.37□□□□□ -1.55
PTPRA-201ENST00000216877 MT1XP80297 61 aa5.36□□□□□ -1.55
PTPRA-201ENST00000216877 LCE2AQ5TA79 106 aaPredicted RBP5.35□□□□□ -1.55
PTPRA-201ENST00000216877 KRTAP19-5Q3LI72 72 aa5.34□□□□□ -1.56
PTPRA-201ENST00000216877 USH2AO75445 5202 aa5.31□□□□□ -1.56
PTPRA-201ENST00000216877 KRTAP9-6A8MVA2 160 aa5.24□□□□□ -1.57
PTPRA-201ENST00000216877 MT1BP07438 61 aa5.22□□□□□ -1.57
PTPRA-201ENST00000216877 KRTAP4-7Q9BYR0 210 aa5.22□□□□□ -1.57
PTPRA-201ENST00000216877 KRTAP9-3Q9BYQ3 159 aa5.21□□□□□ -1.57
PTPRA-201ENST00000216877 KMT2DO14686 5537 aa5.21□□□□□ -1.58
PTPRA-201ENST00000216877 SSPOA2VEC9 5147 aa5.19□□□□□ -1.58
PTPRA-201ENST00000216877 CRCT1Q9UGL9 99 aa5.15□□□□□ -1.59
PTPRA-201ENST00000216877 KRTAP19-8Q3LI54 63 aa5.14□□□□□ -1.59
PTPRA-201ENST00000216877 KRTAP4-8A0A0G2JLE6 195 aa5.1□□□□□ -1.59
PTPRA-201ENST00000216877 KRTAP4-8Q9BYQ9 185 aa5.1□□□□□ -1.59
PTPRA-201ENST00000216877 LCE2BO14633 110 aa5.07□□□□□ -1.6
PTPRA-201ENST00000216877 KRTAP2-3P0C7H8 128 aa5.07□□□□□ -1.6
PTPRA-201ENST00000216877 KRTAP2-4Q9BYR9 128 aa5.07□□□□□ -1.6
PTPRA-201ENST00000216877 KRTAP2-1Q9BYU5 128 aa5.07□□□□□ -1.6
PTPRA-201ENST00000216877 KRTAP12-4P60329 112 aa5.06□□□□□ -1.6
PTPRA-201ENST00000216877 SYNE1Q8NF91 8797 aaKnown RBP5.05□□□□□ -1.6
PTPRA-201ENST00000216877 DSTQ03001 7570 aaKnown RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms