RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 MT1HL1P0DM35 61 aa4.36□□□□□ -1.71
VAMP3-201ENST00000054666 PMAIP1Q13794 54 aa4.36□□□□□ -1.71
VAMP3-201ENST00000054666 COX6B2Q6YFQ2 88 aa4.36□□□□□ -1.71
VAMP3-201ENST00000054666 KIAA1109Q2LD37 5005 aa4.36□□□□□ -1.71
VAMP3-201ENST00000054666 UQCR11O14957 56 aa4.35□□□□□ -1.71
VAMP3-201ENST00000054666 KRTAP17-1Q9BYP8 105 aa4.35□□□□□ -1.71
VAMP3-201ENST00000054666 KRTAP3-1Q9BYR8 98 aa4.34□□□□□ -1.72
VAMP3-201ENST00000054666 MYCBP2O75592 4640 aa4.32□□□□□ -1.72
VAMP3-201ENST00000054666 MIR22HGQ0VDD5 57 aa4.31□□□□□ -1.72
VAMP3-201ENST00000054666 EPPK1P58107 5090 aaKnown RBP4.3□□□□□ -1.72
VAMP3-201ENST00000054666 SPATA8Q6RVD6 105 aa4.3□□□□□ -1.72
VAMP3-201ENST00000054666 TPRXLQ17RH7 258 aa4.29□□□□□ -1.72
VAMP3-201ENST00000054666 A6NN06 94 aa4.27□□□□□ -1.73
VAMP3-201ENST00000054666 KTN1-AS1Q86SY8 53 aa4.26□□□□□ -1.73
VAMP3-201ENST00000054666 S4R3F8 94 aa4.23□□□□□ -1.73
VAMP3-201ENST00000054666 A0A1B0GU33 70 aa4.22□□□□□ -1.73
VAMP3-201ENST00000054666 H1FX-AS1Q4G0G2 97 aa4.21□□□□□ -1.74
VAMP3-201ENST00000054666 KRTAP4-5Q9BYR2 181 aa4.21□□□□□ -1.74
VAMP3-201ENST00000054666 KRTAP9-8Q9BYQ0 159 aa4.21□□□□□ -1.74
VAMP3-201ENST00000054666 RBM12B-AS1Q9P1G2 102 aa4.2□□□□□ -1.74
VAMP3-201ENST00000054666 H0YAA0 97 aa4.18□□□□□ -1.74
VAMP3-201ENST00000054666 A0A0A0MQY5 61 aa4.18□□□□□ -1.74
VAMP3-201ENST00000054666 LRP2P98164 4655 aa4.16□□□□□ -1.74
VAMP3-201ENST00000054666 SEC61BP60468 96 aaKnown RBP4.15□□□□□ -1.75
VAMP3-201ENST00000054666 LPAP08519 4548 aa4.14□□□□□ -1.75
VAMP3-201ENST00000054666 ABCA13Q86UQ4 5058 aa4.12□□□□□ -1.75
VAMP3-201ENST00000054666 K7ERS5 55 aa4.12□□□□□ -1.75
VAMP3-201ENST00000054666 KRTAP10-6P60371 365 aaPredicted RBP4.1□□□□□ -1.75
VAMP3-201ENST00000054666 CSAG1Q6PB30 78 aa4.1□□□□□ -1.75
VAMP3-201ENST00000054666 HERC2O95714 4834 aa4.1□□□□□ -1.75
VAMP3-201ENST00000054666 KRTAP5-3Q6L8H2 238 aa4.09□□□□□ -1.75
VAMP3-201ENST00000054666 BIRC6Q9NR09 4857 aa4.08□□□□□ -1.76
VAMP3-201ENST00000054666 ADM2Q7Z4H4 148 aa4.07□□□□□ -1.76
VAMP3-201ENST00000054666 PRAC1Q96KF2 57 aa4.06□□□□□ -1.76
VAMP3-201ENST00000054666 P0C880 135 aa4.05□□□□□ -1.76
VAMP3-201ENST00000054666 A0A0D9SG42 100 aa4.03□□□□□ -1.76
VAMP3-201ENST00000054666 KRTAP13-4Q3LI77 160 aa4.03□□□□□ -1.76
VAMP3-201ENST00000054666 MUC17Q685J3 4493 aa4.02□□□□□ -1.77
VAMP3-201ENST00000054666 M0QZ58 72 aa3.99□□□□□ -1.77
VAMP3-201ENST00000054666 KRTAP4-1Q9BYQ7 146 aa3.98□□□□□ -1.77
VAMP3-201ENST00000054666 ROMO1P60602 79 aa3.95□□□□□ -1.78
VAMP3-201ENST00000054666 SPINT4Q6UDR6 99 aa3.93□□□□□ -1.78
VAMP3-201ENST00000054666 R4GN34 69 aa3.93□□□□□ -1.78
VAMP3-201ENST00000054666 KRTAP4-8Q9BYQ9 185 aa3.91□□□□□ -1.78
VAMP3-201ENST00000054666 KRTAP12-2P59991 146 aa3.91□□□□□ -1.78
VAMP3-201ENST00000054666 LINC01554Q52M75 96 aa3.91□□□□□ -1.78
VAMP3-201ENST00000054666 KRTAP25-1Q3LHN0 102 aa3.9□□□□□ -1.78
VAMP3-201ENST00000054666 KRTAP12-1P59990 96 aa3.9□□□□□ -1.79
VAMP3-201ENST00000054666 PCLOQ9Y6V0 5065 aa3.89□□□□□ -1.79
VAMP3-201ENST00000054666 KRTAP19-2Q3LHN2 52 aa3.89□□□□□ -1.79
VAMP3-201ENST00000054666 HERC1Q15751 4861 aa3.88□□□□□ -1.79
VAMP3-201ENST00000054666 HMCN2Q8NDA2 5059 aa3.86□□□□□ -1.79
VAMP3-201ENST00000054666 KRTAP4-8A0A0G2JLE6 195 aa3.85□□□□□ -1.79
VAMP3-201ENST00000054666 FLGP20930 4061 aaPredicted RBP3.84□□□□□ -1.79
VAMP3-201ENST00000054666 CRIPTQ9P021 101 aa3.84□□□□□ -1.79
VAMP3-201ENST00000054666 KRTAP4-7Q9BYR0 210 aa3.82□□□□□ -1.8
VAMP3-201ENST00000054666 MUC2Q02817 5179 aa3.8□□□□□ -1.8
VAMP3-201ENST00000054666 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.76□□□□□ -1.81
VAMP3-201ENST00000054666 KRTAP9-6A0A140TA67 174 aa3.75□□□□□ -1.81
VAMP3-201ENST00000054666 KRTAP9-2Q9BYQ4 174 aa3.75□□□□□ -1.81
VAMP3-201ENST00000054666 C10orf95Q9H7T3 257 aa3.74□□□□□ -1.81
VAMP3-201ENST00000054666 M0R2T5 61 aa3.72□□□□□ -1.81
VAMP3-201ENST00000054666 CAMK2N1Q7Z7J9 78 aa3.72□□□□□ -1.81
VAMP3-201ENST00000054666 MT1HP80294 61 aa3.67□□□□□ -1.82
VAMP3-201ENST00000054666 FAT4Q6V0I7 4981 aa3.66□□□□□ -1.82
VAMP3-201ENST00000054666 RNF213Q63HN8 5207 aa3.66□□□□□ -1.82
VAMP3-201ENST00000054666 UBR4Q5T4S7 5183 aa3.64□□□□□ -1.83
VAMP3-201ENST00000054666 LCE3BQ5TA77 95 aa3.64□□□□□ -1.83
VAMP3-201ENST00000054666 SPRR2GQ9BYE4 73 aa3.61□□□□□ -1.83
VAMP3-201ENST00000054666 KRTAP23-1A1A580 65 aa3.59□□□□□ -1.83
VAMP3-201ENST00000054666 PLAC4Q8WY50 150 aa3.59□□□□□ -1.83
VAMP3-201ENST00000054666 KRTAP10-10P60014 251 aa3.59□□□□□ -1.84
VAMP3-201ENST00000054666 KRTAP4-2Q9BYR5 136 aa3.58□□□□□ -1.84
VAMP3-201ENST00000054666 PP632Q6XCG6 107 aa3.58□□□□□ -1.84
VAMP3-201ENST00000054666 MT2AP02795 61 aa3.57□□□□□ -1.84
VAMP3-201ENST00000054666 TNP1P09430 55 aa3.56□□□□□ -1.84
VAMP3-201ENST00000054666 KRTAP19-1Q8IUB9 90 aa3.56□□□□□ -1.84
VAMP3-201ENST00000054666 MT1FP04733 61 aa3.56□□□□□ -1.84
VAMP3-201ENST00000054666 KRTAP9-9Q9BYP9 154 aa3.54□□□□□ -1.84
VAMP3-201ENST00000054666 KRTAP9-4Q9BYQ2 154 aa3.54□□□□□ -1.84
VAMP3-201ENST00000054666 KRTAP15-1Q3LI76 137 aa3.5□□□□□ -1.85
VAMP3-201ENST00000054666 KRTAP4-9Q9BYQ8 210 aa3.48□□□□□ -1.85
VAMP3-201ENST00000054666 KRTAP19-8Q3LI54 63 aa3.47□□□□□ -1.85
VAMP3-201ENST00000054666 KRTAP4-12Q9BQ66 201 aa3.46□□□□□ -1.86
VAMP3-201ENST00000054666 LCE1DQ5T752 114 aa3.43□□□□□ -1.86
VAMP3-201ENST00000054666 MT1BP07438 61 aa3.41□□□□□ -1.86
VAMP3-201ENST00000054666 KRTAP9-3Q9BYQ3 159 aa3.4□□□□□ -1.87
VAMP3-201ENST00000054666 NDUFAF8A1L188 74 aa3.36□□□□□ -1.87
VAMP3-201ENST00000054666 KRTAP10-5P60370 271 aa3.35□□□□□ -1.87
VAMP3-201ENST00000054666 MT1XP80297 61 aa3.35□□□□□ -1.87
VAMP3-201ENST00000054666 PRO2289Q9P1D8 64 aa3.35□□□□□ -1.87
VAMP3-201ENST00000054666 LCE3AQ5TA76 89 aa3.34□□□□□ -1.87
VAMP3-201ENST00000054666 KRTAP19-4Q3LI73 84 aa3.31□□□□□ -1.88
VAMP3-201ENST00000054666 LUZP6Q538Z0 58 aa3.31□□□□□ -1.88
VAMP3-201ENST00000054666 KRTAP10-12P60413 245 aa3.3□□□□□ -1.88
VAMP3-201ENST00000054666 LCE4AQ5TA78 99 aa3.29□□□□□ -1.88
VAMP3-201ENST00000054666 KRTAP8-1Q8IUC2 63 aa3.27□□□□□ -1.89
VAMP3-201ENST00000054666 KRTAP9-7A8MTY7 169 aa3.24□□□□□ -1.89
VAMP3-201ENST00000054666 KRTAP10-7P60409 375 aaPredicted RBP3.24□□□□□ -1.89
VAMP3-201ENST00000054666 SPRR5A0A1B0GTR4 108 aa3.21□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms