RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 FAT3Q8TDW7 4589 aa9.6□□□□□ -0.87
CLN3-252ENST00000636907 MMP24-AS1A0A0U1RRL7 71 aa9.6□□□□□ -0.87
CLN3-252ENST00000636907 KRTAP29-1A8MX34 341 aaPredicted RBP9.59□□□□□ -0.87
CLN3-252ENST00000636907 SERP2Q8N6R1 65 aa9.59□□□□□ -0.87
CLN3-252ENST00000636907 KRTAP10-8P60410 259 aa9.58□□□□□ -0.88
CLN3-252ENST00000636907 CASC2Q6XLA1 102 aa9.58□□□□□ -0.88
CLN3-252ENST00000636907 C8orf17Q9NRJ1 99 aa9.58□□□□□ -0.88
CLN3-252ENST00000636907 CCDC179H3BU77 68 aa9.56□□□□□ -0.88
CLN3-252ENST00000636907 COX7CP15954 63 aa9.56□□□□□ -0.88
CLN3-252ENST00000636907 SMIM20Q8N5G0 67 aa9.56□□□□□ -0.88
CLN3-252ENST00000636907 TNXBP22105 4242 aa9.56□□□□□ -0.88
CLN3-252ENST00000636907 TRAV7A0A075B6U4 112 aa9.55□□□□□ -0.88
CLN3-252ENST00000636907 NOTCH2NLQ7Z3S9 236 aa9.55□□□□□ -0.88
CLN3-252ENST00000636907 OCR1Q9BZK8 76 aa9.55□□□□□ -0.88
CLN3-252ENST00000636907 hDV103S1A0JD37 113 aa9.54□□□□□ -0.88
CLN3-252ENST00000636907 UQCRQO14949 82 aa9.52□□□□□ -0.89
CLN3-252ENST00000636907 BIRC6Q9NR09 4857 aa9.51□□□□□ -0.89
CLN3-252ENST00000636907 KRTAP4-5Q9BYR2 181 aa9.51□□□□□ -0.89
CLN3-252ENST00000636907 FLG2Q5D862 2391 aaPredicted RBP9.49□□□□□ -0.89
CLN3-252ENST00000636907 C8orf87E5RJ46 101 aa9.48□□□□□ -0.89
CLN3-252ENST00000636907 MYCBP2O75592 4640 aa9.48□□□□□ -0.89
CLN3-252ENST00000636907 TMEM254Q8TBM7 123 aa9.47□□□□□ -0.89
CLN3-252ENST00000636907 MT1HL1P0DM35 61 aa9.45□□□□□ -0.9
CLN3-252ENST00000636907 LINC00313P59037 77 aa9.45□□□□□ -0.9
CLN3-252ENST00000636907 MRPL34Q9BQ48 92 aaKnown RBP9.45□□□□□ -0.9
CLN3-252ENST00000636907 RETNLBQ9BQ08 111 aa9.44□□□□□ -0.9
CLN3-252ENST00000636907 C20orf197Q8N268 126 aa9.42□□□□□ -0.9
CLN3-252ENST00000636907 HERC2O95714 4834 aa9.41□□□□□ -0.9
CLN3-252ENST00000636907 OXTP01178 125 aa9.39□□□□□ -0.91
CLN3-252ENST00000636907 NDUFS5O43920 106 aa9.39□□□□□ -0.91
CLN3-252ENST00000636907 KRTAP16-1A8MUX0 517 aa9.38□□□□□ -0.91
CLN3-252ENST00000636907 CYSTM1Q9H1C7 97 aa9.37□□□□□ -0.91
CLN3-252ENST00000636907 SNURFQ9Y675 71 aa9.36□□□□□ -0.91
CLN3-252ENST00000636907 C5orf47Q569G3 176 aa9.36□□□□□ -0.91
CLN3-252ENST00000636907 TP53AIP1Q9HCN2 124 aa9.36□□□□□ -0.91
CLN3-252ENST00000636907 ABCA13Q86UQ4 5058 aa9.34□□□□□ -0.91
CLN3-252ENST00000636907 A0A0U1RQV1 116 aa9.33□□□□□ -0.92
CLN3-252ENST00000636907 KLKP1Q107X0 134 aa9.33□□□□□ -0.92
CLN3-252ENST00000636907 Q8N9P0 234 aaPredicted RBP9.33□□□□□ -0.92
CLN3-252ENST00000636907 DMBT1Q9UGM3 2413 aaPredicted RBP9.31□□□□□ -0.92
CLN3-252ENST00000636907 H0Y9P7 68 aa9.31□□□□□ -0.92
CLN3-252ENST00000636907 C9orf92A6NGG3 77 aa9.3□□□□□ -0.92
CLN3-252ENST00000636907 TRAV22A0A0B4J277 110 aa9.29□□□□□ -0.92
CLN3-252ENST00000636907 MP68P56378 58 aa9.29□□□□□ -0.92
CLN3-252ENST00000636907 FP248Q71RG6 208 aaPredicted RBP9.26□□□□□ -0.93
CLN3-252ENST00000636907 ZCCHC13Q8WW36 166 aaKnown RBP9.26□□□□□ -0.93
CLN3-252ENST00000636907 Q5W150 140 aa9.26□□□□□ -0.93
CLN3-252ENST00000636907 LINC00208Q96KT6 92 aa9.26□□□□□ -0.93
CLN3-252ENST00000636907 KRTAP13-3Q3SY46 172 aa9.23□□□□□ -0.93
CLN3-252ENST00000636907 H3BPC8 53 aa9.23□□□□□ -0.93
CLN3-252ENST00000636907 H7BZZ5 65 aa9.23□□□□□ -0.93
CLN3-252ENST00000636907 IGLV7-46A0A075B6I9 117 aa9.21□□□□□ -0.93
CLN3-252ENST00000636907 C1orf64Q8NEQ6 169 aa9.21□□□□□ -0.93
CLN3-252ENST00000636907 NDUFC1O43677 76 aa9.2□□□□□ -0.94
CLN3-252ENST00000636907 A8MUU9 505 aa9.18□□□□□ -0.94
CLN3-252ENST00000636907 C20orf166-AS1Q96NR2 134 aa9.18□□□□□ -0.94
CLN3-252ENST00000636907 J3QL48 77 aa9.16□□□□□ -0.94
CLN3-252ENST00000636907 TMEM258P61165 79 aa9.16□□□□□ -0.94
CLN3-252ENST00000636907 PRR4Q16378 134 aa9.15□□□□□ -0.94
CLN3-252ENST00000636907 LOC101927531A0A1B0GV80 90 aa9.11□□□□□ -0.95
CLN3-252ENST00000636907 Q75L30 129 aa9.1□□□□□ -0.95
CLN3-252ENST00000636907 FAM236DA0A1B0GTK5 79 aa9.07□□□□□ -0.96
CLN3-252ENST00000636907 FAM236CP0DP71 79 aa9.07□□□□□ -0.96
CLN3-252ENST00000636907 PCOTHQ58A44 107 aa9.07□□□□□ -0.96
CLN3-252ENST00000636907 XP32Q5T750 250 aa9.07□□□□□ -0.96
CLN3-252ENST00000636907 CYP4F30PQ9H0H9 118 aa9.07□□□□□ -0.96
CLN3-252ENST00000636907 IGKV2-30P06310 120 aa9.06□□□□□ -0.96
CLN3-252ENST00000636907 TPRXLQ17RH7 258 aa9.03□□□□□ -0.96
CLN3-252ENST00000636907 IGKV2D-30A0A075B6S6 120 aa9.02□□□□□ -0.97
CLN3-252ENST00000636907 RPL37P61927 97 aaKnown RBP9.01□□□□□ -0.97
CLN3-252ENST00000636907 ATP5EP56381 51 aaPredicted RBP9□□□□□ -0.97
CLN3-252ENST00000636907 SPANXA2-OT1Q8N9U9 137 aa8.98□□□□□ -0.97
CLN3-252ENST00000636907 ATP11AUNQ6ZP68 121 aa8.96□□□□□ -0.98
CLN3-252ENST00000636907 C7orf65Q6ZTY9 151 aa8.95□□□□□ -0.98
CLN3-252ENST00000636907 PCLOQ9Y6V0 5065 aa8.95□□□□□ -0.98
CLN3-252ENST00000636907 LPAP08519 4548 aa8.95□□□□□ -0.98
CLN3-252ENST00000636907 HRES1P13985 223 aa8.93□□□□□ -0.98
CLN3-252ENST00000636907 KRTAP3-3Q9BYR6 98 aa8.91□□□□□ -0.98
CLN3-252ENST00000636907 KRTAP3-2Q9BYR7 98 aa8.91□□□□□ -0.98
CLN3-252ENST00000636907 LRP2P98164 4655 aa8.89□□□□□ -0.99
CLN3-252ENST00000636907 SPINK7P58062 85 aa8.88□□□□□ -0.99
CLN3-252ENST00000636907 SERP1Q9Y6X1 66 aa8.88□□□□□ -0.99
CLN3-252ENST00000636907 RPS28P62857 69 aaKnown RBP8.85□□□□□ -0.99
CLN3-252ENST00000636907 HERC1Q15751 4861 aa8.8□□□□□ -1
CLN3-252ENST00000636907 C4orf26Q17RF5 130 aa8.78□□□□□ -1
CLN3-252ENST00000636907 DMAC1Q96GE9 116 aa8.78□□□□□ -1
CLN3-252ENST00000636907 COA5Q86WW8 74 aa8.75□□□□□ -1.01
CLN3-252ENST00000636907 ACYP2P14621 99 aa8.72□□□□□ -1.01
CLN3-252ENST00000636907 HMCN2Q8NDA2 5059 aa8.71□□□□□ -1.02
CLN3-252ENST00000636907 SEC61BP60468 96 aaKnown RBP8.7□□□□□ -1.02
CLN3-252ENST00000636907 KRTAP3-1Q9BYR8 98 aa8.68□□□□□ -1.02
CLN3-252ENST00000636907 MUC17Q685J3 4493 aa8.66□□□□□ -1.02
CLN3-252ENST00000636907 A8MUN3 132 aa8.66□□□□□ -1.02
CLN3-252ENST00000636907 COX6B2Q6YFQ2 88 aa8.66□□□□□ -1.02
CLN3-252ENST00000636907 SMIM26A0A096LP01 95 aa8.64□□□□□ -1.03
CLN3-252ENST00000636907 CHKB-CPT1BH3BT56 60 aa8.59□□□□□ -1.03
CLN3-252ENST00000636907 KRTAP4-1Q9BYQ7 146 aa8.58□□□□□ -1.04
CLN3-252ENST00000636907 MPLKIPQ8TAP9 179 aa8.57□□□□□ -1.04
CLN3-252ENST00000636907 RBM12B-AS1Q9P1G2 102 aa8.5□□□□□ -1.05
CLN3-252ENST00000636907 Q1T7F1 81 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms