RNA–Protein interactions for RNA: ENST00000635562.1

PSPC1-208, Transcript of paraspeckle component 1, humanhuman

TSL 3

Gene PSPC1, Length 422 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-208ENST00000635562 GCN1Q92616 2671 aaKnown RBP0.86□□□□□ -2.27
PSPC1-208ENST00000635562 PRKDCP78527 4128 aaKnown RBP0.86□□□□□ -2.27
PSPC1-208ENST00000635562 H0YGG7 62 aa0.86□□□□□ -2.27
PSPC1-208ENST00000635562 DEFB135Q30KP9 77 aa0.86□□□□□ -2.27
PSPC1-208ENST00000635562 SACSQ9NZJ4 4579 aa0.85□□□□□ -2.27
PSPC1-208ENST00000635562 DMBT1Q9UGM3 2413 aaPredicted RBP0.85□□□□□ -2.27
PSPC1-208ENST00000635562 EPG5Q9HCE0 2579 aa0.85□□□□□ -2.27
PSPC1-208ENST00000635562 FRYQ5TBA9 3013 aa0.85□□□□□ -2.27
PSPC1-208ENST00000635562 NF1P21359 2839 aa0.85□□□□□ -2.27
PSPC1-208ENST00000635562 ANK2Q01484 3957 aa0.85□□□□□ -2.27
PSPC1-208ENST00000635562 MAP1BP46821 2468 aaKnown RBP0.84□□□□□ -2.27
PSPC1-208ENST00000635562 ZZEF1O43149 2961 aa0.84□□□□□ -2.27
PSPC1-208ENST00000635562 KRTAP2-3P0C7H8 128 aa0.84□□□□□ -2.27
PSPC1-208ENST00000635562 KRTAP2-4Q9BYR9 128 aa0.84□□□□□ -2.27
PSPC1-208ENST00000635562 KRTAP2-1Q9BYU5 128 aa0.84□□□□□ -2.27
PSPC1-208ENST00000635562 CHD8Q9HCK8 2581 aa0.84□□□□□ -2.28
PSPC1-208ENST00000635562 LYSTQ99698 3801 aa0.84□□□□□ -2.28
PSPC1-208ENST00000635562 MYCBP2O75592 4640 aa0.84□□□□□ -2.28
PSPC1-208ENST00000635562 VPS13BQ7Z7G8 4022 aa0.83□□□□□ -2.28
PSPC1-208ENST00000635562 CEP250Q9BV73 2442 aa0.83□□□□□ -2.28
PSPC1-208ENST00000635562 M0R2T5 61 aa0.83□□□□□ -2.28
PSPC1-208ENST00000635562 SMR3AQ99954 134 aa0.83□□□□□ -2.28
PSPC1-208ENST00000635562 APC2O95996 2303 aa0.83□□□□□ -2.28
PSPC1-208ENST00000635562 DCHS2Q6V1P9 2916 aa0.82□□□□□ -2.28
PSPC1-208ENST00000635562 ZFHX4Q86UP3 3567 aa0.82□□□□□ -2.28
PSPC1-208ENST00000635562 TNXBP22105 4242 aa0.82□□□□□ -2.28
PSPC1-208ENST00000635562 TACC2O95359 2948 aa0.82□□□□□ -2.28
PSPC1-208ENST00000635562 HIVEP1P15822 2718 aa0.82□□□□□ -2.28
PSPC1-208ENST00000635562 HIVEP3Q5T1R4 2406 aa0.81□□□□□ -2.28
PSPC1-208ENST00000635562 RIF1Q5UIP0 2472 aaKnown RBP0.81□□□□□ -2.28
PSPC1-208ENST00000635562 SPENQ96T58 3664 aaKnown RBP0.81□□□□□ -2.28
PSPC1-208ENST00000635562 H3BUX3 64 aa0.81□□□□□ -2.28
PSPC1-208ENST00000635562 TNP1P09430 55 aa0.81□□□□□ -2.28
PSPC1-208ENST00000635562 BSNQ9UPA5 3926 aa0.81□□□□□ -2.28
PSPC1-208ENST00000635562 NSD1Q96L73 2696 aaPredicted RBP0.81□□□□□ -2.28
PSPC1-208ENST00000635562 KMT2AQ03164 3969 aa0.81□□□□□ -2.28
PSPC1-208ENST00000635562 PKD1L1Q8TDX9 2849 aa0.8□□□□□ -2.28
PSPC1-208ENST00000635562 NBPF19A0A087WUL8 3843 aa0.8□□□□□ -2.28
PSPC1-208ENST00000635562 SETXQ7Z333 2677 aaKnown RBP0.8□□□□□ -2.28
PSPC1-208ENST00000635562 NCOR2Q9Y618 2525 aa0.8□□□□□ -2.28
PSPC1-208ENST00000635562 NBEAL2Q6ZNJ1 2754 aa0.79□□□□□ -2.28
PSPC1-208ENST00000635562 WDR87Q6ZQQ6 2873 aa0.79□□□□□ -2.28
PSPC1-208ENST00000635562 UTP20O75691 2785 aaKnown RBP0.79□□□□□ -2.28
PSPC1-208ENST00000635562 FAT2Q9NYQ8 4349 aa0.79□□□□□ -2.28
PSPC1-208ENST00000635562 APELAP0DMC3 54 aa0.79□□□□□ -2.28
PSPC1-208ENST00000635562 RELNP78509 3460 aa0.79□□□□□ -2.28
PSPC1-208ENST00000635562 CFAP54Q96N23 3096 aa0.79□□□□□ -2.28
PSPC1-208ENST00000635562 LRRK2Q5S007 2527 aa0.79□□□□□ -2.28
PSPC1-208ENST00000635562 FAM186AA6NE01 2351 aa0.78□□□□□ -2.28
PSPC1-208ENST00000635562 COL12A1Q99715 3063 aa0.78□□□□□ -2.28
PSPC1-208ENST00000635562 RANBP2P49792 3224 aaKnown RBP0.78□□□□□ -2.28
PSPC1-208ENST00000635562 CACNA1AO00555 2505 aa0.78□□□□□ -2.28
PSPC1-208ENST00000635562 DNAH8Q96JB1 4490 aa0.78□□□□□ -2.28
PSPC1-208ENST00000635562 NBEAQ8NFP9 2946 aa0.78□□□□□ -2.28
PSPC1-208ENST00000635562 C9orf92A6NGG3 77 aa0.78□□□□□ -2.28
PSPC1-208ENST00000635562 DEFB1P60022 68 aa0.78□□□□□ -2.28
PSPC1-208ENST00000635562 SPINK6Q6UWN8 80 aa0.78□□□□□ -2.28
PSPC1-208ENST00000635562 ANKRD11Q6UB99 2663 aaPredicted RBP0.78□□□□□ -2.29
PSPC1-208ENST00000635562 TENM1Q9UKZ4 2725 aa0.78□□□□□ -2.29
PSPC1-208ENST00000635562 UNC79Q9P2D8 2635 aa0.77□□□□□ -2.29
PSPC1-208ENST00000635562 LRBAP50851 2863 aa0.77□□□□□ -2.29
PSPC1-208ENST00000635562 DYNC2H1Q8NCM8 4307 aaKnown RBP0.77□□□□□ -2.29
PSPC1-208ENST00000635562 NOTCH1P46531 2555 aa0.77□□□□□ -2.29
PSPC1-208ENST00000635562 ZNF469Q96JG9 3925 aaPredicted RBP0.77□□□□□ -2.29
PSPC1-208ENST00000635562 DMXL1Q9Y485 3027 aa0.76□□□□□ -2.29
PSPC1-208ENST00000635562 STAB1Q9NY15 2570 aa0.76□□□□□ -2.29
PSPC1-208ENST00000635562 CELSR3Q9NYQ7 3312 aa0.76□□□□□ -2.29
PSPC1-208ENST00000635562 FRYLO94915 3013 aa0.75□□□□□ -2.29
PSPC1-208ENST00000635562 MTORP42345 2549 aa0.75□□□□□ -2.29
PSPC1-208ENST00000635562 ACANP16112 2415 aa0.75□□□□□ -2.29
PSPC1-208ENST00000635562 SPG11Q96JI7 2443 aa0.75□□□□□ -2.29
PSPC1-208ENST00000635562 PKHD1L1Q86WI1 4243 aa0.75□□□□□ -2.29
PSPC1-208ENST00000635562 RHPN1-AS1Q9BWJ2 59 aa0.75□□□□□ -2.29
PSPC1-208ENST00000635562 COL7A1Q02388 2944 aa0.75□□□□□ -2.29
PSPC1-208ENST00000635562 NIPBLQ6KC79 2804 aaeCLIP0.75□□□□□ -2.29
PSPC1-208ENST00000635562 FLNBO75369 2602 aaKnown RBP0.75□□□□□ -2.29
PSPC1-208ENST00000635562 DNAH3Q8TD57 4116 aa0.75□□□□□ -2.29
PSPC1-208ENST00000635562 AKAP9Q99996 3911 aa0.75□□□□□ -2.29
PSPC1-208ENST00000635562 MXRA5Q9NR99 2828 aa0.74□□□□□ -2.29
PSPC1-208ENST00000635562 ITPR1Q14643 2758 aa0.74□□□□□ -2.29
PSPC1-208ENST00000635562 USP9XQ93008 2570 aaPredicted RBP0.74□□□□□ -2.29
PSPC1-208ENST00000635562 PTPN13Q12923 2485 aa0.74□□□□□ -2.29
PSPC1-208ENST00000635562 PRM1P04553 51 aa0.74□□□□□ -2.29
PSPC1-208ENST00000635562 FRAS1Q86XX4 4008 aa0.74□□□□□ -2.29
PSPC1-208ENST00000635562 DNAH2Q9P225 4427 aa0.73□□□□□ -2.29
PSPC1-208ENST00000635562 ATMQ13315 3056 aa0.73□□□□□ -2.29
PSPC1-208ENST00000635562 LAMA5O15230 3695 aa0.73□□□□□ -2.29
PSPC1-208ENST00000635562 ZANQ9Y493 2812 aa0.73□□□□□ -2.29
PSPC1-208ENST00000635562 H3BNG1 76 aa0.73□□□□□ -2.29
PSPC1-208ENST00000635562 STATHP02808 62 aa0.73□□□□□ -2.29
PSPC1-208ENST00000635562 SPART-AS1P0CW21 52 aa0.73□□□□□ -2.29
PSPC1-208ENST00000635562 ZFYVE26Q68DK2 2539 aa0.73□□□□□ -2.29
PSPC1-208ENST00000635562 ANKHD1Q8IWZ3 2542 aaKnown RBP0.73□□□□□ -2.29
PSPC1-208ENST00000635562 MAP1AP78559 2803 aaPredicted RBP0.73□□□□□ -2.29
PSPC1-208ENST00000635562 PKD1P98161 4303 aa0.72□□□□□ -2.29
PSPC1-208ENST00000635562 KALRNO60229 2985 aa0.72□□□□□ -2.29
PSPC1-208ENST00000635562 KRTAP19-3Q7Z4W3 81 aa0.72□□□□□ -2.29
PSPC1-208ENST00000635562 TEP1Q99973 2627 aaKnown RBP0.72□□□□□ -2.29
PSPC1-208ENST00000635562 COL6A3P12111 3177 aa0.72□□□□□ -2.29
PSPC1-208ENST00000635562 PRUNE2Q8WUY3 3088 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms