RNA–Protein interactions for RNA: ENST00000635562.1

PSPC1-208, Transcript of paraspeckle component 1, humanhuman

TSL 3

Gene PSPC1, Length 422 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-208ENST00000635562 AEBP2Q6ZN18 517 aaPredicted RBP16.01■□□□□ 0.15
PSPC1-208ENST00000635562 CHIC1Q5VXU3 224 aa15.3■□□□□ 0.04
PSPC1-208ENST00000635562 SENP3Q9H4L4 574 aaPredicted RBP13.83□□□□□ -0.2
PSPC1-208ENST00000635562 PHF23Q9BUL5 403 aaPredicted RBP13.55□□□□□ -0.24
PSPC1-208ENST00000635562 FOXD1Q16676 465 aa12.78□□□□□ -0.36
PSPC1-208ENST00000635562 PLPPR3Q6T4P5 718 aa12.29□□□□□ -0.44
PSPC1-208ENST00000635562 MSH5O43196 834 aa12.1□□□□□ -0.47
PSPC1-208ENST00000635562 PIAS4Q8N2W9 510 aaPredicted RBP11.99□□□□□ -0.49
PSPC1-208ENST00000635562 PPP6R1Q9UPN7 881 aa11.87□□□□□ -0.51
PSPC1-208ENST00000635562 ADRA2BP18089 450 aa11.85□□□□□ -0.51
PSPC1-208ENST00000635562 POTEDQ86YR6 584 aa11.69□□□□□ -0.54
PSPC1-208ENST00000635562 SCAF1Q9H7N4 1312 aaKnown RBP11.06□□□□□ -0.64
PSPC1-208ENST00000635562 DMRT2Q9Y5R5 561 aa10.93□□□□□ -0.66
PSPC1-208ENST00000635562 MAPK8IP2Q13387 824 aaPredicted RBP10.85□□□□□ -0.67
PSPC1-208ENST00000635562 PPP4R3CPQ6ZMV5 832 aa10.7□□□□□ -0.7
PSPC1-208ENST00000635562 CNKSR2Q8WXI2 1034 aa10.56□□□□□ -0.72
PSPC1-208ENST00000635562 HOXD11P31277 338 aaPredicted RBP10.53□□□□□ -0.72
PSPC1-208ENST00000635562 RNF216Q9NWF9 866 aaPredicted RBP10.47□□□□□ -0.73
PSPC1-208ENST00000635562 DCAF8L1A6NGE4 600 aa10.44□□□□□ -0.74
PSPC1-208ENST00000635562 NCBP3Q53F19 620 aaKnown RBP10.4□□□□□ -0.74
PSPC1-208ENST00000635562 CACNB1Q02641 598 aaPredicted RBP10.31□□□□□ -0.76
PSPC1-208ENST00000635562 DNAJC5BQ9UF47 199 aa10.28□□□□□ -0.76
PSPC1-208ENST00000635562 RNF39Q9H2S5 420 aa10.25□□□□□ -0.77
PSPC1-208ENST00000635562 C1QBPQ07021 282 aaKnown RBP10.16□□□□□ -0.78
PSPC1-208ENST00000635562 NPM3O75607 178 aaKnown RBP10.12□□□□□ -0.79
PSPC1-208ENST00000635562 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.03□□□□□ -0.84e-8■■■■□ 24.8
PSPC1-208ENST00000635562 KCNA4P22459 653 aa9.88□□□□□ -0.83
PSPC1-208ENST00000635562 U3KPZ7 1027 aaPredicted RBP9.77□□□□□ -0.85
PSPC1-208ENST00000635562 APLP2Q06481 763 aa9.71□□□□□ -0.86
PSPC1-208ENST00000635562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.66□□□□□ -0.86
PSPC1-208ENST00000635562 HNRNPUL2Q1KMD3 747 aaKnown RBP9.66□□□□□ -0.86
PSPC1-208ENST00000635562 CAPN15O75808 1086 aa9.64□□□□□ -0.87
PSPC1-208ENST00000635562 SLC4A2P04920 1241 aa9.63□□□□□ -0.87
PSPC1-208ENST00000635562 SPINK5Q9NQ38 1064 aaPredicted RBP9.59□□□□□ -0.87
PSPC1-208ENST00000635562 DSG3P32926 999 aa9.58□□□□□ -0.88
PSPC1-208ENST00000635562 SAMD1Q6SPF0 538 aaPredicted RBP9.56□□□□□ -0.88
PSPC1-208ENST00000635562 ZNF219Q9P2Y4 722 aaPredicted RBP9.56□□□□□ -0.88
PSPC1-208ENST00000635562 TRHP20396 242 aaPredicted RBP9.46□□□□□ -0.9
PSPC1-208ENST00000635562 MYCNP04198 464 aaPredicted RBP9.45□□□□□ -0.9
PSPC1-208ENST00000635562 SLC4A1APQ9BWU0 796 aaKnown RBP9.39□□□□□ -0.91
PSPC1-208ENST00000635562 ABCB7O75027 752 aa9.35□□□□□ -0.91
PSPC1-208ENST00000635562 FOXD4L1Q9NU39 408 aa9.32□□□□□ -0.92
PSPC1-208ENST00000635562 RBM42Q9BTD8 480 aaKnown RBP9.27□□□□□ -0.93
PSPC1-208ENST00000635562 POLA2Q14181 598 aa9.22□□□□□ -0.93
PSPC1-208ENST00000635562 POTEHQ6S545 545 aa9.19□□□□□ -0.94
PSPC1-208ENST00000635562 ZBTB12Q9Y330 459 aaPredicted RBP9.18□□□□□ -0.94
PSPC1-208ENST00000635562 ATXN8OSP0DMR3 200 aa9.1□□□□□ -0.95
PSPC1-208ENST00000635562 ATF5Q9Y2D1 282 aaPredicted RBP9.06□□□□□ -0.96
PSPC1-208ENST00000635562 ZBTB22O15209 634 aa9.04□□□□□ -0.96
PSPC1-208ENST00000635562 AKT1S1Q96B36 256 aa8.99□□□□□ -0.97
PSPC1-208ENST00000635562 CHRDL2Q6WN34 429 aa8.97□□□□□ -0.97
PSPC1-208ENST00000635562 OSCARQ8IYS5 282 aa8.91□□□□□ -0.98
PSPC1-208ENST00000635562 FBLN2P98095 1184 aa8.89□□□□□ -0.99
PSPC1-208ENST00000635562 REM2Q8IYK8 340 aaPredicted RBP8.85□□□□□ -0.99
PSPC1-208ENST00000635562 SPDYE2BA6NHP3 402 aa8.83□□□□□ -1
PSPC1-208ENST00000635562 SPDYE6P0CI01 402 aa8.83□□□□□ -1
PSPC1-208ENST00000635562 SPDYE2Q495Y8 402 aa8.83□□□□□ -1
PSPC1-208ENST00000635562 PITPNM1O00562 1244 aa8.74□□□□□ -1.01
PSPC1-208ENST00000635562 PIP4P2Q8N4L2 257 aa8.72□□□□□ -1.01
PSPC1-208ENST00000635562 FXR2P51116 673 aaKnown RBP eCLIP8.69□□□□□ -1.02
PSPC1-208ENST00000635562 MKRN4PQ13434 485 aaPredicted RBP8.68□□□□□ -1.02
PSPC1-208ENST00000635562 SPDYE1Q8NFV5 336 aaPredicted RBP8.68□□□□□ -1.02
PSPC1-208ENST00000635562 ZNF692Q9BU19 519 aaPredicted RBP8.68□□□□□ -1.02
PSPC1-208ENST00000635562 SSUH2Q9Y2M2 353 aa8.67□□□□□ -1.02
PSPC1-208ENST00000635562 CSRNP3Q8WYN3 585 aa8.66□□□□□ -1.02
PSPC1-208ENST00000635562 SP7Q8TDD2 431 aaPredicted RBP8.64□□□□□ -1.03
PSPC1-208ENST00000635562 CLEC11AQ9Y240 323 aa8.59□□□□□ -1.03
PSPC1-208ENST00000635562 HAX1O00165 279 aa8.58□□□□□ -1.04
PSPC1-208ENST00000635562 PRKAR2AP13861 404 aaKnown RBP8.54□□□□□ -1.04
PSPC1-208ENST00000635562 EHMT2Q96KQ7 1210 aa8.53□□□□□ -1.04
PSPC1-208ENST00000635562 PABPN1Q86U42 306 aaKnown RBP eCLIP8.52□□□□□ -1.05
PSPC1-208ENST00000635562 PRR29P0C7W0 189 aa8.48□□□□□ -1.05
PSPC1-208ENST00000635562 C19orf67A6NJJ6 358 aa8.42□□□□□ -1.06
PSPC1-208ENST00000635562 STAG3Q9UJ98 1225 aa8.4□□□□□ -1.06
PSPC1-208ENST00000635562 EVX2Q03828 476 aa8.36□□□□□ -1.07
PSPC1-208ENST00000635562 CHADLQ6NUI6 762 aa8.36□□□□□ -1.07
PSPC1-208ENST00000635562 SPDYE4A6NLX3 237 aa8.35□□□□□ -1.07
PSPC1-208ENST00000635562 CLCN6P51797 869 aa8.33□□□□□ -1.08
PSPC1-208ENST00000635562 FARP1Q9Y4F1 1045 aaPredicted RBP8.32□□□□□ -1.08
PSPC1-208ENST00000635562 CD44P16070 742 aaKnown RBP8.28□□□□□ -1.08
PSPC1-208ENST00000635562 GABBR2O75899 941 aa8.27□□□□□ -1.09
PSPC1-208ENST00000635562 CREBZFQ9NS37 354 aa8.21□□□□□ -1.1
PSPC1-208ENST00000635562 PAK3O75914 559 aaPredicted RBP8.19□□□□□ -1.1
PSPC1-208ENST00000635562 NPM1P06748 294 aaKnown RBP eCLIP8.18□□□□□ -1.1
PSPC1-208ENST00000635562 ZNF579Q8NAF0 562 aaKnown RBP8.18□□□□□ -1.1
PSPC1-208ENST00000635562 PROM2Q8N271 834 aa8.15□□□□□ -1.1
PSPC1-208ENST00000635562 ZRANB1Q9UGI0 708 aa8.14□□□□□ -1.11
PSPC1-208ENST00000635562 DCBLD2Q96PD2 775 aa8.1□□□□□ -1.11
PSPC1-208ENST00000635562 PLEKHG5O94827 1062 aa8.09□□□□□ -1.11
PSPC1-208ENST00000635562 LHX8Q68G74 356 aa8.08□□□□□ -1.12
PSPC1-208ENST00000635562 MNX1P50219 401 aaPredicted RBP8.07□□□□□ -1.12
PSPC1-208ENST00000635562 POTEIP0CG38 1075 aa8.03□□□□□ -1.12
PSPC1-208ENST00000635562 GALR2O43603 387 aaPredicted RBP7.99□□□□□ -1.13
PSPC1-208ENST00000635562 PHF12Q96QT6 1004 aa7.98□□□□□ -1.13
PSPC1-208ENST00000635562 ZBTB47Q9UFB7 747 aaPredicted RBP7.98□□□□□ -1.13
PSPC1-208ENST00000635562 MIER1Q8N108 512 aa7.96□□□□□ -1.14
PSPC1-208ENST00000635562 PLCD3Q8N3E9 789 aa7.92□□□□□ -1.14
PSPC1-208ENST00000635562 CCDC61Q9Y6R9 512 aa7.92□□□□□ -1.14
PSPC1-208ENST00000635562 TSPYL2Q9H2G4 693 aaPredicted RBP7.91□□□□□ -1.14
PSPC1-208ENST00000635562 ASTLQ6HA08 431 aaPredicted RBP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms