RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 BATFQ16520 125 aa9.69□□□□□ -0.86
CCDC28A-203ENST00000617445 IGHV6-1A0A0B4J1U7 121 aa9.68□□□□□ -0.86
CCDC28A-203ENST00000617445 NOTCH2NLQ7Z3S9 236 aa9.68□□□□□ -0.86
CCDC28A-203ENST00000617445 C9JAW5 83 aa9.67□□□□□ -0.86
CCDC28A-203ENST00000617445 C8orf87E5RJ46 101 aa9.67□□□□□ -0.86
CCDC28A-203ENST00000617445 VPS25Q9BRG1 176 aa9.67□□□□□ -0.86
CCDC28A-203ENST00000617445 JMJD7-PLA2G4BH0Y9G9 81 aa9.66□□□□□ -0.86
CCDC28A-203ENST00000617445 A0A1B0GVX0 72 aa9.64□□□□□ -0.87
CCDC28A-203ENST00000617445 J3KT08 172 aa9.64□□□□□ -0.87
CCDC28A-203ENST00000617445 RBM12B-AS1Q9P1G2 102 aa9.63□□□□□ -0.87
CCDC28A-203ENST00000617445 FAM236DA0A1B0GTK5 79 aa9.61□□□□□ -0.87
CCDC28A-203ENST00000617445 C9orf118A6NHY6 69 aa9.61□□□□□ -0.87
CCDC28A-203ENST00000617445 FAM236CP0DP71 79 aa9.61□□□□□ -0.87
CCDC28A-203ENST00000617445 PDE6GP18545 87 aa9.6□□□□□ -0.87
CCDC28A-203ENST00000617445 LOC110117498A0A087WWA1 95 aa9.59□□□□□ -0.87
CCDC28A-203ENST00000617445 MPLKIPQ8TAP9 179 aa9.59□□□□□ -0.87
CCDC28A-203ENST00000617445 KRTAP9-8Q9BYQ0 159 aa9.59□□□□□ -0.87
CCDC28A-203ENST00000617445 A0A1B0GW54 56 aa9.58□□□□□ -0.88
CCDC28A-203ENST00000617445 TAX1BP3O14907 124 aa9.58□□□□□ -0.88
CCDC28A-203ENST00000617445 Q6ZQT0 140 aa9.58□□□□□ -0.88
CCDC28A-203ENST00000617445 HRES1P13985 223 aa9.57□□□□□ -0.88
CCDC28A-203ENST00000617445 NDUFB1O75438 58 aa9.56□□□□□ -0.88
CCDC28A-203ENST00000617445 A0A1W2PPM0 123 aa9.55□□□□□ -0.88
CCDC28A-203ENST00000617445 C14orf132Q9NPU4 83 aa9.53□□□□□ -0.88
CCDC28A-203ENST00000617445 MTURNQ8N3F0 131 aa9.52□□□□□ -0.89
CCDC28A-203ENST00000617445 ZCCHC13Q8WW36 166 aaKnown RBP9.52□□□□□ -0.89
CCDC28A-203ENST00000617445 H3BT86 120 aa9.5□□□□□ -0.89
CCDC28A-203ENST00000617445 Q8N9P0 234 aaPredicted RBP9.48□□□□□ -0.89
CCDC28A-203ENST00000617445 A8MWP4 228 aa9.47□□□□□ -0.89
CCDC28A-203ENST00000617445 SPINK7P58062 85 aa9.45□□□□□ -0.9
CCDC28A-203ENST00000617445 C8orf17Q9NRJ1 99 aa9.44□□□□□ -0.9
CCDC28A-203ENST00000617445 MT2AP02795 61 aa9.43□□□□□ -0.9
CCDC28A-203ENST00000617445 COL5A1-AS1Q5SY13 56 aa9.43□□□□□ -0.9
CCDC28A-203ENST00000617445 SPCS1Q9Y6A9 102 aa9.42□□□□□ -0.9
CCDC28A-203ENST00000617445 NREPQ16612 68 aa9.41□□□□□ -0.9
CCDC28A-203ENST00000617445 IGKV3D-7A0A0C4DH55 119 aa9.4□□□□□ -0.9
CCDC28A-203ENST00000617445 Q6ZVQ6 151 aa9.37□□□□□ -0.91
CCDC28A-203ENST00000617445 PRR15Q8IV56 129 aa9.37□□□□□ -0.91
CCDC28A-203ENST00000617445 MT1FP04733 61 aa9.34□□□□□ -0.91
CCDC28A-203ENST00000617445 KRTAP10-10P60014 251 aa9.34□□□□□ -0.91
CCDC28A-203ENST00000617445 SMCPP49901 116 aaPredicted RBP9.31□□□□□ -0.92
CCDC28A-203ENST00000617445 TMEM254Q8TBM7 123 aa9.3□□□□□ -0.92
CCDC28A-203ENST00000617445 KRTAP9-3Q9BYQ3 159 aa9.3□□□□□ -0.92
CCDC28A-203ENST00000617445 K7EP34 96 aa9.29□□□□□ -0.92
CCDC28A-203ENST00000617445 WFDC13Q8IUB5 93 aa9.29□□□□□ -0.92
CCDC28A-203ENST00000617445 MRPL34Q9BQ48 92 aaKnown RBP9.29□□□□□ -0.92
CCDC28A-203ENST00000617445 USH2AO75445 5202 aa9.27□□□□□ -0.93
CCDC28A-203ENST00000617445 MMP24-AS1A0A0U1RRL7 71 aa9.27□□□□□ -0.93
CCDC28A-203ENST00000617445 PRO0461Q9UI25 63 aa9.27□□□□□ -0.93
CCDC28A-203ENST00000617445 PCP4L1A6NKN8 68 aa9.25□□□□□ -0.93
CCDC28A-203ENST00000617445 hDV103S1A0JD37 113 aa9.24□□□□□ -0.93
CCDC28A-203ENST00000617445 BPY2O14599 106 aa9.24□□□□□ -0.93
CCDC28A-203ENST00000617445 LCE2BO14633 110 aa9.24□□□□□ -0.93
CCDC28A-203ENST00000617445 GTF2H5Q6ZYL4 71 aa9.23□□□□□ -0.93
CCDC28A-203ENST00000617445 K7EQZ3 153 aa9.22□□□□□ -0.93
CCDC28A-203ENST00000617445 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.21□□□□□ -0.94
CCDC28A-203ENST00000617445 SSPOA2VEC9 5147 aa9.21□□□□□ -0.94
CCDC28A-203ENST00000617445 NDUFS5O43920 106 aa9.19□□□□□ -0.94
CCDC28A-203ENST00000617445 F8W1H4 67 aa9.15□□□□□ -0.94
CCDC28A-203ENST00000617445 H1FX-AS1Q4G0G2 97 aa9.15□□□□□ -0.94
CCDC28A-203ENST00000617445 UBL5Q9BZL1 73 aa9.15□□□□□ -0.94
CCDC28A-203ENST00000617445 KRTAP19-1Q8IUB9 90 aa9.14□□□□□ -0.95
CCDC28A-203ENST00000617445 KRTAP9-7A8MTY7 169 aa9.13□□□□□ -0.95
CCDC28A-203ENST00000617445 LINC00846Q9NV44 126 aa9.13□□□□□ -0.95
CCDC28A-203ENST00000617445 C7orf65Q6ZTY9 151 aa9.1□□□□□ -0.95
CCDC28A-203ENST00000617445 Q8N9L7 120 aa9.1□□□□□ -0.95
CCDC28A-203ENST00000617445 IGKV2D-30A0A075B6S6 120 aa9.08□□□□□ -0.96
CCDC28A-203ENST00000617445 IGKV2-30P06310 120 aa9.08□□□□□ -0.96
CCDC28A-203ENST00000617445 ETDBQ3ZM63 59 aa9.08□□□□□ -0.96
CCDC28A-203ENST00000617445 CASC2Q6XLA1 102 aa9.07□□□□□ -0.96
CCDC28A-203ENST00000617445 FCGBPQ9Y6R7 5405 aaPredicted RBP9.07□□□□□ -0.96
CCDC28A-203ENST00000617445 Q5W150 140 aa9.06□□□□□ -0.96
CCDC28A-203ENST00000617445 HCG22E2RYF7 251 aa9.03□□□□□ -0.96
CCDC28A-203ENST00000617445 CXCL6P80162 114 aa9.03□□□□□ -0.96
CCDC28A-203ENST00000617445 KRTAP19-6Q3LI70 58 aa8.99□□□□□ -0.97
CCDC28A-203ENST00000617445 C4orf26Q17RF5 130 aa8.93□□□□□ -0.98
CCDC28A-203ENST00000617445 ACYP1P07311 99 aa8.91□□□□□ -0.98
CCDC28A-203ENST00000617445 FAM240AA0A1B0GVK7 77 aa8.86□□□□□ -0.99
CCDC28A-203ENST00000617445 TP53AIP1Q9HCN2 124 aa8.86□□□□□ -0.99
CCDC28A-203ENST00000617445 MACF1Q9UPN3 7388 aaKnown RBP8.82□□□□□ -1
CCDC28A-203ENST00000617445 C5orf47Q569G3 176 aa8.79□□□□□ -1
CCDC28A-203ENST00000617445 ATP5EP2Q5VTU8 51 aa8.79□□□□□ -1
CCDC28A-203ENST00000617445 C1orf64Q8NEQ6 169 aa8.78□□□□□ -1
CCDC28A-203ENST00000617445 KRTAP3-1Q9BYR8 98 aa8.78□□□□□ -1
CCDC28A-203ENST00000617445 S4R3F8 94 aa8.78□□□□□ -1
CCDC28A-203ENST00000617445 CSAG1Q6PB30 78 aa8.77□□□□□ -1.01
CCDC28A-203ENST00000617445 A0A1B0GV90 55 aa8.75□□□□□ -1.01
CCDC28A-203ENST00000617445 FAM236AA0A1B0GUQ0 79 aa8.74□□□□□ -1.01
CCDC28A-203ENST00000617445 FAM236BA0A1B0GV22 79 aa8.74□□□□□ -1.01
CCDC28A-203ENST00000617445 HIST1H4AP62805 103 aaKnown RBP8.7□□□□□ -1.02
CCDC28A-203ENST00000617445 SYNE2Q8WXH0 6885 aaKnown RBP8.69□□□□□ -1.02
CCDC28A-203ENST00000617445 LCA10Q71F78 164 aa8.69□□□□□ -1.02
CCDC28A-203ENST00000617445 LINC00643Q86TS7 51 aa8.68□□□□□ -1.02
CCDC28A-203ENST00000617445 TRAV22A0A0B4J277 110 aa8.65□□□□□ -1.02
CCDC28A-203ENST00000617445 CYP4F30PQ9H0H9 118 aa8.64□□□□□ -1.03
CCDC28A-203ENST00000617445 KRTAP6-3Q3LI67 103 aa8.62□□□□□ -1.03
CCDC28A-203ENST00000617445 SPRR2GQ9BYE4 73 aa8.62□□□□□ -1.03
CCDC28A-203ENST00000617445 LOC101927531A0A1B0GV80 90 aa8.61□□□□□ -1.03
CCDC28A-203ENST00000617445 UQCRQO14949 82 aa8.6□□□□□ -1.03
CCDC28A-203ENST00000617445 Q5VV11 94 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms