RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 S4R3F8 94 aa8□□□□□ -1.13
GGA3-220ENST00000613421 Q5VSD8 79 aa7.99□□□□□ -1.13
GGA3-220ENST00000613421 FLG2Q5D862 2391 aaPredicted RBP7.98□□□□□ -1.13
GGA3-220ENST00000613421 ASB16-AS1Q495Z4 193 aa7.98□□□□□ -1.13
GGA3-220ENST00000613421 DCHS2Q6V1P9 2916 aa7.97□□□□□ -1.13
GGA3-220ENST00000613421 CSAG1Q6PB30 78 aa7.95□□□□□ -1.14
GGA3-220ENST00000613421 FBN2P35556 2912 aa7.95□□□□□ -1.14
GGA3-220ENST00000613421 NF1P21359 2839 aa7.93□□□□□ -1.14
GGA3-220ENST00000613421 CRYBG3Q68DQ2 2970 aa7.9□□□□□ -1.14
GGA3-220ENST00000613421 DMBT1Q9UGM3 2413 aaPredicted RBP7.89□□□□□ -1.15
GGA3-220ENST00000613421 KRTAP13-2Q52LG2 175 aa7.88□□□□□ -1.15
GGA3-220ENST00000613421 RPS29P62273 56 aaKnown RBP7.85□□□□□ -1.15
GGA3-220ENST00000613421 WDFY3Q8IZQ1 3526 aa7.85□□□□□ -1.15
GGA3-220ENST00000613421 H1FX-AS1Q4G0G2 97 aa7.84□□□□□ -1.15
GGA3-220ENST00000613421 CAMK2N1Q7Z7J9 78 aa7.83□□□□□ -1.16
GGA3-220ENST00000613421 A6NN06 94 aa7.83□□□□□ -1.16
GGA3-220ENST00000613421 MXRA5Q9NR99 2828 aa7.82□□□□□ -1.16
GGA3-220ENST00000613421 RELNP78509 3460 aa7.82□□□□□ -1.16
GGA3-220ENST00000613421 A8MU10 97 aa7.82□□□□□ -1.16
GGA3-220ENST00000613421 SEC61BP60468 96 aaKnown RBP7.81□□□□□ -1.16
GGA3-220ENST00000613421 TENM4Q6N022 2769 aa7.79□□□□□ -1.16
GGA3-220ENST00000613421 RPL37P61927 97 aaKnown RBP7.79□□□□□ -1.16
GGA3-220ENST00000613421 R4GN34 69 aa7.77□□□□□ -1.17
GGA3-220ENST00000613421 SPATA8Q6RVD6 105 aa7.76□□□□□ -1.17
GGA3-220ENST00000613421 ZFHX4Q86UP3 3567 aa7.72□□□□□ -1.17
GGA3-220ENST00000613421 M0R2T5 61 aa7.71□□□□□ -1.17
GGA3-220ENST00000613421 ROMO1P60602 79 aa7.71□□□□□ -1.17
GGA3-220ENST00000613421 LAMA5O15230 3695 aa7.71□□□□□ -1.18
GGA3-220ENST00000613421 LUZP6Q538Z0 58 aa7.67□□□□□ -1.18
GGA3-220ENST00000613421 DMDP11532 3685 aa7.66□□□□□ -1.18
GGA3-220ENST00000613421 ASPMQ8IZT6 3477 aa7.66□□□□□ -1.18
GGA3-220ENST00000613421 ADM2Q7Z4H4 148 aa7.66□□□□□ -1.18
GGA3-220ENST00000613421 M0QZ58 72 aa7.66□□□□□ -1.18
GGA3-220ENST00000613421 DCHS1Q96JQ0 3298 aa7.65□□□□□ -1.18
GGA3-220ENST00000613421 CELSR1Q9NYQ6 3014 aa7.62□□□□□ -1.19
GGA3-220ENST00000613421 KRTAP21-3Q3LHN1 58 aa7.61□□□□□ -1.19
GGA3-220ENST00000613421 TENM3Q9P273 2699 aa7.6□□□□□ -1.19
GGA3-220ENST00000613421 MUC3AQ02505 3323 aa7.57□□□□□ -1.2
GGA3-220ENST00000613421 KRTAP1-4P0C5Y4 121 aa7.57□□□□□ -1.2
GGA3-220ENST00000613421 A8MUU9 505 aa7.57□□□□□ -1.2
GGA3-220ENST00000613421 C20orf166-AS1Q96NR2 134 aa7.55□□□□□ -1.2
GGA3-220ENST00000613421 SMG1Q96Q15 3661 aaKnown RBP7.52□□□□□ -1.21
GGA3-220ENST00000613421 PDZD2O15018 2839 aa7.51□□□□□ -1.21
GGA3-220ENST00000613421 CSMD1Q96PZ7 3565 aa7.5□□□□□ -1.21
GGA3-220ENST00000613421 KRTAP25-1Q3LHN0 102 aa7.48□□□□□ -1.21
GGA3-220ENST00000613421 TENM1Q9UKZ4 2725 aa7.47□□□□□ -1.21
GGA3-220ENST00000613421 KRTAP16-1A8MUX0 517 aa7.4□□□□□ -1.22
GGA3-220ENST00000613421 NBPF19A0A087WUL8 3843 aa7.35□□□□□ -1.23
GGA3-220ENST00000613421 PLAC4Q8WY50 150 aa7.35□□□□□ -1.23
GGA3-220ENST00000613421 A0A0A0MQY5 61 aa7.34□□□□□ -1.23
GGA3-220ENST00000613421 VWFP04275 2813 aa7.34□□□□□ -1.23
GGA3-220ENST00000613421 TENM2Q9NT68 2774 aa7.34□□□□□ -1.23
GGA3-220ENST00000613421 XP32Q5T750 250 aa7.33□□□□□ -1.24
GGA3-220ENST00000613421 OTOGQ6ZRI0 2925 aa7.31□□□□□ -1.24
GGA3-220ENST00000613421 SVEP1Q4LDE5 3571 aa7.31□□□□□ -1.24
GGA3-220ENST00000613421 TGP01266 2768 aa7.27□□□□□ -1.24
GGA3-220ENST00000613421 FBN1P35555 2871 aaKnown RBP7.26□□□□□ -1.25
GGA3-220ENST00000613421 SPENQ96T58 3664 aaKnown RBP7.25□□□□□ -1.25
GGA3-220ENST00000613421 NDUFAF8A1L188 74 aa7.25□□□□□ -1.25
GGA3-220ENST00000613421 KRTAP13-3Q3SY46 172 aa7.25□□□□□ -1.25
GGA3-220ENST00000613421 ANK3Q12955 4377 aaKnown RBP7.24□□□□□ -1.25
GGA3-220ENST00000613421 H0YAA0 97 aa7.23□□□□□ -1.25
GGA3-220ENST00000613421 PKD1L1Q8TDX9 2849 aa7.22□□□□□ -1.25
GGA3-220ENST00000613421 BSNQ9UPA5 3926 aa7.17□□□□□ -1.26
GGA3-220ENST00000613421 TPRXLQ17RH7 258 aa7.16□□□□□ -1.26
GGA3-220ENST00000613421 A0A1B0GVY2 172 aa7.13□□□□□ -1.27
GGA3-220ENST00000613421 ZFHX3Q15911 3703 aa7.11□□□□□ -1.27
GGA3-220ENST00000613421 CSMD2Q7Z408 3487 aa7.09□□□□□ -1.27
GGA3-220ENST00000613421 TNP1P09430 55 aa7.07□□□□□ -1.28
GGA3-220ENST00000613421 KRTAP10-8P60410 259 aa7.06□□□□□ -1.28
GGA3-220ENST00000613421 CUBNO60494 3623 aa7.05□□□□□ -1.28
GGA3-220ENST00000613421 C10orf95Q9H7T3 257 aa7.04□□□□□ -1.28
GGA3-220ENST00000613421 P0C880 135 aa7.02□□□□□ -1.28
GGA3-220ENST00000613421 TRRAPQ9Y4A5 3859 aa7.01□□□□□ -1.29
GGA3-220ENST00000613421 PP632Q6XCG6 107 aa6.94□□□□□ -1.3
GGA3-220ENST00000613421 FBN3Q75N90 2809 aa6.93□□□□□ -1.3
GGA3-220ENST00000613421 KRTAP3-1Q9BYR8 98 aa6.86□□□□□ -1.31
GGA3-220ENST00000613421 MEGF8Q7Z7M0 2845 aa6.85□□□□□ -1.31
GGA3-220ENST00000613421 VPS13CQ709C8 3753 aa6.82□□□□□ -1.32
GGA3-220ENST00000613421 SRRM2Q9UQ35 2752 aaKnown RBP6.8□□□□□ -1.32
GGA3-220ENST00000613421 HUWE1Q7Z6Z7 4374 aaKnown RBP6.77□□□□□ -1.33
GGA3-220ENST00000613421 KRTAP12-2P59991 146 aa6.77□□□□□ -1.33
GGA3-220ENST00000613421 KRTAP10-10P60014 251 aa6.75□□□□□ -1.33
GGA3-220ENST00000613421 KRTAP12-1P59990 96 aa6.68□□□□□ -1.34
GGA3-220ENST00000613421 COL7A1Q02388 2944 aa6.66□□□□□ -1.34
GGA3-220ENST00000613421 KRTAP10-6P60371 365 aaPredicted RBP6.63□□□□□ -1.35
GGA3-220ENST00000613421 KRTAP13-4Q3LI77 160 aa6.61□□□□□ -1.35
GGA3-220ENST00000613421 ZNF469Q96JG9 3925 aaPredicted RBP6.6□□□□□ -1.35
GGA3-220ENST00000613421 AKAP9Q99996 3911 aa6.57□□□□□ -1.36
GGA3-220ENST00000613421 PRO2289Q9P1D8 64 aa6.57□□□□□ -1.36
GGA3-220ENST00000613421 MT1HL1P0DM35 61 aa6.55□□□□□ -1.36
GGA3-220ENST00000613421 KRTAP10-4P60372 401 aaPredicted RBP6.55□□□□□ -1.36
GGA3-220ENST00000613421 DNAH9Q9NYC9 4486 aa6.47□□□□□ -1.37
GGA3-220ENST00000613421 KRTAP3-3Q9BYR6 98 aa6.46□□□□□ -1.38
GGA3-220ENST00000613421 KRTAP3-2Q9BYR7 98 aa6.43□□□□□ -1.38
GGA3-220ENST00000613421 ALMS1Q8TCU4 4167 aa6.42□□□□□ -1.38
GGA3-220ENST00000613421 CSMD3Q7Z407 3707 aa6.39□□□□□ -1.39
GGA3-220ENST00000613421 DNAH1Q9P2D7 4330 aa6.32□□□□□ -1.4
GGA3-220ENST00000613421 PLECQ15149 4684 aaKnown RBP6.32□□□□□ -1.4
GGA3-220ENST00000613421 KRTAP15-1Q3LI76 137 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms