RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 RPS29P62273 56 aaKnown RBP5.82□□□□□ -1.48
UPF1-213ENST00000601981 LINC00472Q9H8W2 130 aa5.82□□□□□ -1.48
UPF1-213ENST00000601981 ATOX1O00244 68 aa5.81□□□□□ -1.48
UPF1-213ENST00000601981 DSCR10P59022 87 aa5.81□□□□□ -1.48
UPF1-213ENST00000601981 ANAPC13Q9BS18 74 aa5.81□□□□□ -1.48
UPF1-213ENST00000601981 J3KT08 172 aa5.8□□□□□ -1.48
UPF1-213ENST00000601981 HRCT1Q6UXD1 115 aa5.8□□□□□ -1.48
UPF1-213ENST00000601981 LIMD2Q9BT23 127 aa5.8□□□□□ -1.48
UPF1-213ENST00000601981 Q8N9L7 120 aa5.79□□□□□ -1.48
UPF1-213ENST00000601981 Q96NJ1 140 aa5.78□□□□□ -1.48
UPF1-213ENST00000601981 A8MWP4 228 aa5.77□□□□□ -1.49
UPF1-213ENST00000601981 K7EQZ3 153 aa5.77□□□□□ -1.49
UPF1-213ENST00000601981 PRR4Q16378 134 aa5.77□□□□□ -1.49
UPF1-213ENST00000601981 DEFB116Q30KQ4 102 aa5.77□□□□□ -1.49
UPF1-213ENST00000601981 ASB16-AS1Q495Z4 193 aa5.77□□□□□ -1.49
UPF1-213ENST00000601981 Q5XG85 94 aa5.76□□□□□ -1.49
UPF1-213ENST00000601981 PRR15Q8IV56 129 aa5.75□□□□□ -1.49
UPF1-213ENST00000601981 SMIM20Q8N5G0 67 aa5.75□□□□□ -1.49
UPF1-213ENST00000601981 FP248Q71RG6 208 aaPredicted RBP5.74□□□□□ -1.49
UPF1-213ENST00000601981 RNF213Q63HN8 5207 aa5.74□□□□□ -1.49
UPF1-213ENST00000601981 NDUFB1O75438 58 aa5.73□□□□□ -1.49
UPF1-213ENST00000601981 RETNLBQ9BQ08 111 aa5.73□□□□□ -1.49
UPF1-213ENST00000601981 HCG22E2RYF7 251 aa5.72□□□□□ -1.49
UPF1-213ENST00000601981 LCE2CQ5TA81 110 aa5.72□□□□□ -1.49
UPF1-213ENST00000601981 SERP2Q8N6R1 65 aa5.72□□□□□ -1.49
UPF1-213ENST00000601981 LRP2P98164 4655 aa5.72□□□□□ -1.49
UPF1-213ENST00000601981 COX7CP15954 63 aa5.71□□□□□ -1.5
UPF1-213ENST00000601981 IGLV7-46A0A075B6I9 117 aa5.7□□□□□ -1.5
UPF1-213ENST00000601981 TRAV7A0A075B6U4 112 aa5.7□□□□□ -1.5
UPF1-213ENST00000601981 UQCRQO14949 82 aa5.7□□□□□ -1.5
UPF1-213ENST00000601981 A0A1B0GVX0 72 aa5.69□□□□□ -1.5
UPF1-213ENST00000601981 MMP24-AS1A0A0U1RRL7 71 aa5.68□□□□□ -1.5
UPF1-213ENST00000601981 CCDC179H3BU77 68 aa5.68□□□□□ -1.5
UPF1-213ENST00000601981 C1orf195Q5TG92 126 aa5.67□□□□□ -1.5
UPF1-213ENST00000601981 CASC2Q6XLA1 102 aa5.67□□□□□ -1.5
UPF1-213ENST00000601981 OCR1Q9BZK8 76 aa5.67□□□□□ -1.5
UPF1-213ENST00000601981 WFDC13Q8IUB5 93 aa5.66□□□□□ -1.5
UPF1-213ENST00000601981 C8orf17Q9NRJ1 99 aa5.66□□□□□ -1.5
UPF1-213ENST00000601981 IGHV6-1A0A0B4J1U7 121 aa5.65□□□□□ -1.5
UPF1-213ENST00000601981 TPRXLQ17RH7 258 aa5.65□□□□□ -1.5
UPF1-213ENST00000601981 hDV103S1A0JD37 113 aa5.64□□□□□ -1.51
UPF1-213ENST00000601981 C8orf87E5RJ46 101 aa5.64□□□□□ -1.51
UPF1-213ENST00000601981 TMEM254Q8TBM7 123 aa5.62□□□□□ -1.51
UPF1-213ENST00000601981 LORP23490 312 aaPredicted RBP5.6□□□□□ -1.51
UPF1-213ENST00000601981 KRTAP13-3Q3SY46 172 aa5.59□□□□□ -1.51
UPF1-213ENST00000601981 NOTCH2NLQ7Z3S9 236 aa5.59□□□□□ -1.51
UPF1-213ENST00000601981 C20orf197Q8N268 126 aa5.59□□□□□ -1.51
UPF1-213ENST00000601981 MRPL34Q9BQ48 92 aaKnown RBP5.59□□□□□ -1.51
UPF1-213ENST00000601981 KLKP1Q107X0 134 aa5.58□□□□□ -1.52
UPF1-213ENST00000601981 TP53AIP1Q9HCN2 124 aa5.58□□□□□ -1.52
UPF1-213ENST00000601981 LINC00313P59037 77 aa5.57□□□□□ -1.52
UPF1-213ENST00000601981 C5orf47Q569G3 176 aa5.57□□□□□ -1.52
UPF1-213ENST00000601981 LPAP08519 4548 aa5.56□□□□□ -1.52
UPF1-213ENST00000601981 A0A0U1RQV1 116 aa5.55□□□□□ -1.52
UPF1-213ENST00000601981 C9orf92A6NGG3 77 aa5.54□□□□□ -1.52
UPF1-213ENST00000601981 KRTAP16-1A8MUX0 517 aa5.53□□□□□ -1.52
UPF1-213ENST00000601981 H3BPC8 53 aa5.53□□□□□ -1.52
UPF1-213ENST00000601981 NDUFC1O43677 76 aa5.53□□□□□ -1.52
UPF1-213ENST00000601981 MP68P56378 58 aa5.53□□□□□ -1.52
UPF1-213ENST00000601981 CYSTM1Q9H1C7 97 aa5.53□□□□□ -1.52
UPF1-213ENST00000601981 SNURFQ9Y675 71 aa5.53□□□□□ -1.52
UPF1-213ENST00000601981 TRAV22A0A0B4J277 110 aa5.52□□□□□ -1.53
UPF1-213ENST00000601981 H0Y9P7 68 aa5.52□□□□□ -1.53
UPF1-213ENST00000601981 NDUFS5O43920 106 aa5.52□□□□□ -1.53
UPF1-213ENST00000601981 Q8N9P0 234 aaPredicted RBP5.52□□□□□ -1.53
UPF1-213ENST00000601981 SEC61BP60468 96 aaKnown RBP5.51□□□□□ -1.53
UPF1-213ENST00000601981 XP32Q5T750 250 aa5.51□□□□□ -1.53
UPF1-213ENST00000601981 ZCCHC13Q8WW36 166 aaKnown RBP5.51□□□□□ -1.53
UPF1-213ENST00000601981 TMEM258P61165 79 aa5.5□□□□□ -1.53
UPF1-213ENST00000601981 H7BZZ5 65 aa5.49□□□□□ -1.53
UPF1-213ENST00000601981 LINC00208Q96KT6 92 aa5.47□□□□□ -1.53
UPF1-213ENST00000601981 C1orf64Q8NEQ6 169 aa5.46□□□□□ -1.54
UPF1-213ENST00000601981 RPL37P61927 97 aaKnown RBP5.44□□□□□ -1.54
UPF1-213ENST00000601981 MUC2Q02817 5179 aa5.44□□□□□ -1.54
UPF1-213ENST00000601981 LOC100996750A0A140TA64 210 aa5.43□□□□□ -1.54
UPF1-213ENST00000601981 FAM236DA0A1B0GTK5 79 aa5.43□□□□□ -1.54
UPF1-213ENST00000601981 LOC101927531A0A1B0GV80 90 aa5.43□□□□□ -1.54
UPF1-213ENST00000601981 FAM236CP0DP71 79 aa5.43□□□□□ -1.54
UPF1-213ENST00000601981 ATP5EP56381 51 aaPredicted RBP5.43□□□□□ -1.54
UPF1-213ENST00000601981 Q5W150 140 aa5.43□□□□□ -1.54
UPF1-213ENST00000601981 C20orf166-AS1Q96NR2 134 aa5.43□□□□□ -1.54
UPF1-213ENST00000601981 KRTAP4-6Q9BYQ5 205 aa5.43□□□□□ -1.54
UPF1-213ENST00000601981 A8MUU9 505 aa5.42□□□□□ -1.54
UPF1-213ENST00000601981 ATP11AUNQ6ZP68 121 aa5.42□□□□□ -1.54
UPF1-213ENST00000601981 Q75L30 129 aa5.42□□□□□ -1.54
UPF1-213ENST00000601981 MUC17Q685J3 4493 aa5.42□□□□□ -1.54
UPF1-213ENST00000601981 FAT4Q6V0I7 4981 aa5.41□□□□□ -1.54
UPF1-213ENST00000601981 PCOTHQ58A44 107 aa5.39□□□□□ -1.55
UPF1-213ENST00000601981 SPANXA2-OT1Q8N9U9 137 aa5.38□□□□□ -1.55
UPF1-213ENST00000601981 KRTAP9-2Q9BYQ4 174 aa5.38□□□□□ -1.55
UPF1-213ENST00000601981 IGKV2-30P06310 120 aa5.37□□□□□ -1.55
UPF1-213ENST00000601981 CYP4F30PQ9H0H9 118 aa5.36□□□□□ -1.55
UPF1-213ENST00000601981 RPS28P62857 69 aaKnown RBP5.33□□□□□ -1.56
UPF1-213ENST00000601981 SERP1Q9Y6X1 66 aa5.33□□□□□ -1.56
UPF1-213ENST00000601981 KRTAP9-6A0A140TA67 174 aa5.32□□□□□ -1.56
UPF1-213ENST00000601981 C7orf65Q6ZTY9 151 aa5.31□□□□□ -1.56
UPF1-213ENST00000601981 IGKV2D-30A0A075B6S6 120 aa5.3□□□□□ -1.56
UPF1-213ENST00000601981 HRES1P13985 223 aa5.27□□□□□ -1.57
UPF1-213ENST00000601981 KRTAP4-1Q9BYQ7 146 aa5.27□□□□□ -1.57
UPF1-213ENST00000601981 DMAC1Q96GE9 116 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms