RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 IGKV3D-7A0A0C4DH55 119 aa7.88□□□□□ -1.15
UPF1-211ENST00000600868 C9orf92A6NGG3 77 aa7.88□□□□□ -1.15
UPF1-211ENST00000600868 IGHV6-1A0A0B4J1U7 121 aa7.87□□□□□ -1.15
UPF1-211ENST00000600868 CXCL6P80162 114 aa7.87□□□□□ -1.15
UPF1-211ENST00000600868 PRR15Q8IV56 129 aa7.87□□□□□ -1.15
UPF1-211ENST00000600868 C8orf87E5RJ46 101 aa7.86□□□□□ -1.15
UPF1-211ENST00000600868 CDIP1Q9H305 208 aa7.86□□□□□ -1.15
UPF1-211ENST00000600868 LINC00313P59037 77 aa7.85□□□□□ -1.15
UPF1-211ENST00000600868 K7EQZ3 153 aa7.84□□□□□ -1.15
UPF1-211ENST00000600868 ATP5EP2Q5VTU8 51 aa7.84□□□□□ -1.15
UPF1-211ENST00000600868 LINC00643Q86TS7 51 aa7.84□□□□□ -1.15
UPF1-211ENST00000600868 HMCN2Q8NDA2 5059 aa7.84□□□□□ -1.15
UPF1-211ENST00000600868 NOTCH2NLQ7Z3S9 236 aa7.83□□□□□ -1.16
UPF1-211ENST00000600868 XP32Q5T750 250 aa7.82□□□□□ -1.16
UPF1-211ENST00000600868 LPAP08519 4548 aa7.81□□□□□ -1.16
UPF1-211ENST00000600868 Q8N9L7 120 aa7.81□□□□□ -1.16
UPF1-211ENST00000600868 C8orf17Q9NRJ1 99 aa7.81□□□□□ -1.16
UPF1-211ENST00000600868 KRTAP16-1A8MUX0 517 aa7.79□□□□□ -1.16
UPF1-211ENST00000600868 MMP24-AS1A0A0U1RRL7 71 aa7.78□□□□□ -1.16
UPF1-211ENST00000600868 C20orf166-AS1Q96NR2 134 aa7.76□□□□□ -1.17
UPF1-211ENST00000600868 A8MUU9 505 aa7.75□□□□□ -1.17
UPF1-211ENST00000600868 Q75L30 129 aa7.75□□□□□ -1.17
UPF1-211ENST00000600868 RPL37P61927 97 aaKnown RBP7.74□□□□□ -1.17
UPF1-211ENST00000600868 hDV103S1A0JD37 113 aa7.73□□□□□ -1.17
UPF1-211ENST00000600868 TMEM254Q8TBM7 123 aa7.73□□□□□ -1.17
UPF1-211ENST00000600868 LRP2P98164 4655 aa7.73□□□□□ -1.17
UPF1-211ENST00000600868 HCG22E2RYF7 251 aa7.72□□□□□ -1.17
UPF1-211ENST00000600868 CASC2Q6XLA1 102 aa7.71□□□□□ -1.18
UPF1-211ENST00000600868 Q8N9P0 234 aaPredicted RBP7.71□□□□□ -1.18
UPF1-211ENST00000600868 MRPL34Q9BQ48 92 aaKnown RBP7.71□□□□□ -1.18
UPF1-211ENST00000600868 HIST1H4AP62805 103 aaKnown RBP7.7□□□□□ -1.18
UPF1-211ENST00000600868 WFDC13Q8IUB5 93 aa7.7□□□□□ -1.18
UPF1-211ENST00000600868 SEC61BP60468 96 aaKnown RBP7.69□□□□□ -1.18
UPF1-211ENST00000600868 MT-ATP8P03928 68 aa7.65□□□□□ -1.18
UPF1-211ENST00000600868 ATP11AUNQ6ZP68 121 aa7.65□□□□□ -1.18
UPF1-211ENST00000600868 IMUPQ9GZP8 106 aa7.65□□□□□ -1.18
UPF1-211ENST00000600868 PCOTHQ58A44 107 aa7.64□□□□□ -1.19
UPF1-211ENST00000600868 A0A087WVE0 104 aa7.63□□□□□ -1.19
UPF1-211ENST00000600868 NDUFS5O43920 106 aa7.61□□□□□ -1.19
UPF1-211ENST00000600868 MUC17Q685J3 4493 aa7.61□□□□□ -1.19
UPF1-211ENST00000600868 ZCCHC13Q8WW36 166 aaKnown RBP7.59□□□□□ -1.19
UPF1-211ENST00000600868 TP53AIP1Q9HCN2 124 aa7.56□□□□□ -1.2
UPF1-211ENST00000600868 KRTAP4-1Q9BYQ7 146 aa7.52□□□□□ -1.21
UPF1-211ENST00000600868 Q5W150 140 aa7.51□□□□□ -1.21
UPF1-211ENST00000600868 UBR4Q5T4S7 5183 aa7.51□□□□□ -1.21
UPF1-211ENST00000600868 UQCRQO14949 82 aa7.48□□□□□ -1.21
UPF1-211ENST00000600868 SCGB1A1P11684 91 aa7.48□□□□□ -1.21
UPF1-211ENST00000600868 FAM236AA0A1B0GUQ0 79 aa7.47□□□□□ -1.21
UPF1-211ENST00000600868 FAM236BA0A1B0GV22 79 aa7.47□□□□□ -1.21
UPF1-211ENST00000600868 OCR1Q9BZK8 76 aa7.47□□□□□ -1.21
UPF1-211ENST00000600868 TRAV22A0A0B4J277 110 aa7.43□□□□□ -1.22
UPF1-211ENST00000600868 SPINK7P58062 85 aa7.43□□□□□ -1.22
UPF1-211ENST00000600868 SMIM20Q8N5G0 67 aa7.41□□□□□ -1.22
UPF1-211ENST00000600868 RNF213Q63HN8 5207 aa7.4□□□□□ -1.22
UPF1-211ENST00000600868 ATOX1O00244 68 aa7.39□□□□□ -1.23
UPF1-211ENST00000600868 C7orf65Q6ZTY9 151 aa7.39□□□□□ -1.23
UPF1-211ENST00000600868 IGKV2D-30A0A075B6S6 120 aa7.38□□□□□ -1.23
UPF1-211ENST00000600868 H0Y9P7 68 aa7.38□□□□□ -1.23
UPF1-211ENST00000600868 IGKV2-30P06310 120 aa7.38□□□□□ -1.23
UPF1-211ENST00000600868 C5orf47Q569G3 176 aa7.38□□□□□ -1.23
UPF1-211ENST00000600868 MUC2Q02817 5179 aa7.37□□□□□ -1.23
UPF1-211ENST00000600868 TRAV7A0A075B6U4 112 aa7.36□□□□□ -1.23
UPF1-211ENST00000600868 HRES1P13985 223 aa7.36□□□□□ -1.23
UPF1-211ENST00000600868 MP68P56378 58 aa7.35□□□□□ -1.23
UPF1-211ENST00000600868 LOC101927531A0A1B0GV80 90 aa7.34□□□□□ -1.23
UPF1-211ENST00000600868 MPLKIPQ8TAP9 179 aa7.33□□□□□ -1.24
UPF1-211ENST00000600868 H3BPC8 53 aa7.32□□□□□ -1.24
UPF1-211ENST00000600868 CYP4F30PQ9H0H9 118 aa7.32□□□□□ -1.24
UPF1-211ENST00000600868 C1orf64Q8NEQ6 169 aa7.31□□□□□ -1.24
UPF1-211ENST00000600868 LINC00208Q96KT6 92 aa7.31□□□□□ -1.24
UPF1-211ENST00000600868 A0A0U1RQV1 116 aa7.3□□□□□ -1.24
UPF1-211ENST00000600868 KRTAP19-2Q3LHN2 52 aa7.3□□□□□ -1.24
UPF1-211ENST00000600868 SERP2Q8N6R1 65 aa7.29□□□□□ -1.24
UPF1-211ENST00000600868 RBM12B-AS1Q9P1G2 102 aa7.29□□□□□ -1.24
UPF1-211ENST00000600868 LCE2CQ5TA81 110 aa7.24□□□□□ -1.25
UPF1-211ENST00000600868 COX6B2Q6YFQ2 88 aa7.24□□□□□ -1.25
UPF1-211ENST00000600868 FAM236DA0A1B0GTK5 79 aa7.22□□□□□ -1.25
UPF1-211ENST00000600868 FAM236CP0DP71 79 aa7.22□□□□□ -1.25
UPF1-211ENST00000600868 C4orf26Q17RF5 130 aa7.21□□□□□ -1.26
UPF1-211ENST00000600868 COX7CP15954 63 aa7.2□□□□□ -1.26
UPF1-211ENST00000600868 KLKP1Q107X0 134 aa7.2□□□□□ -1.26
UPF1-211ENST00000600868 ANAPC13Q9BS18 74 aa7.18□□□□□ -1.26
UPF1-211ENST00000600868 C20orf197Q8N268 126 aa7.16□□□□□ -1.26
UPF1-211ENST00000600868 SNURFQ9Y675 71 aa7.15□□□□□ -1.26
UPF1-211ENST00000600868 H1FX-AS1Q4G0G2 97 aa7.13□□□□□ -1.27
UPF1-211ENST00000600868 KRTAP3-1Q9BYR8 98 aa7.13□□□□□ -1.27
UPF1-211ENST00000600868 MT1HP80294 61 aa7.11□□□□□ -1.27
UPF1-211ENST00000600868 FLGP20930 4061 aaPredicted RBP7.11□□□□□ -1.27
UPF1-211ENST00000600868 FAT4Q6V0I7 4981 aa7.11□□□□□ -1.27
UPF1-211ENST00000600868 LCE2AQ5TA79 106 aaPredicted RBP7.09□□□□□ -1.27
UPF1-211ENST00000600868 A8MUN3 132 aa7.07□□□□□ -1.28
UPF1-211ENST00000600868 NDUFC1O43677 76 aa7.03□□□□□ -1.28
UPF1-211ENST00000600868 CCDC179H3BU77 68 aa7.02□□□□□ -1.29
UPF1-211ENST00000600868 SPANXA2-OT1Q8N9U9 137 aa7.02□□□□□ -1.29
UPF1-211ENST00000600868 DMAC1Q96GE9 116 aa7.02□□□□□ -1.29
UPF1-211ENST00000600868 M0R2T5 61 aa7□□□□□ -1.29
UPF1-211ENST00000600868 CYSTM1Q9H1C7 97 aa7□□□□□ -1.29
UPF1-211ENST00000600868 H7BZZ5 65 aa6.98□□□□□ -1.29
UPF1-211ENST00000600868 S4R3F8 94 aa6.98□□□□□ -1.29
UPF1-211ENST00000600868 LCA10Q71F78 164 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms