RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 A0A1B0GVX0 72 aa8.6□□□□□ -1.03
TRIM28-209ENST00000597423 DMBT1Q9UGM3 2413 aaPredicted RBP8.59□□□□□ -1.03
TRIM28-209ENST00000597423 IGHV6-1A0A0B4J1U7 121 aa8.58□□□□□ -1.04
TRIM28-209ENST00000597423 K7EQZ3 153 aa8.58□□□□□ -1.04
TRIM28-209ENST00000597423 C8orf87E5RJ46 101 aa8.57□□□□□ -1.04
TRIM28-209ENST00000597423 Q8N9L7 120 aa8.57□□□□□ -1.04
TRIM28-209ENST00000597423 RETNLBQ9BQ08 111 aa8.57□□□□□ -1.04
TRIM28-209ENST00000597423 LINC00313P59037 77 aa8.54□□□□□ -1.04
TRIM28-209ENST00000597423 IGLV7-46A0A075B6I9 117 aa8.52□□□□□ -1.05
TRIM28-209ENST00000597423 PRR4Q16378 134 aa8.52□□□□□ -1.05
TRIM28-209ENST00000597423 HCG22E2RYF7 251 aa8.51□□□□□ -1.05
TRIM28-209ENST00000597423 C8orf17Q9NRJ1 99 aa8.51□□□□□ -1.05
TRIM28-209ENST00000597423 CASC2Q6XLA1 102 aa8.49□□□□□ -1.05
TRIM28-209ENST00000597423 A0A087WVE0 104 aa8.48□□□□□ -1.05
TRIM28-209ENST00000597423 hDV103S1A0JD37 113 aa8.48□□□□□ -1.05
TRIM28-209ENST00000597423 SCGB1A1P11684 91 aa8.47□□□□□ -1.05
TRIM28-209ENST00000597423 MMP24-AS1A0A0U1RRL7 71 aa8.46□□□□□ -1.06
TRIM28-209ENST00000597423 WFDC13Q8IUB5 93 aa8.45□□□□□ -1.06
TRIM28-209ENST00000597423 TMEM254Q8TBM7 123 aa8.45□□□□□ -1.06
TRIM28-209ENST00000597423 NOTCH2NLQ7Z3S9 236 aa8.43□□□□□ -1.06
TRIM28-209ENST00000597423 MRPL34Q9BQ48 92 aaKnown RBP8.43□□□□□ -1.06
TRIM28-209ENST00000597423 FAM236AA0A1B0GUQ0 79 aa8.41□□□□□ -1.06
TRIM28-209ENST00000597423 FAM236BA0A1B0GV22 79 aa8.41□□□□□ -1.06
TRIM28-209ENST00000597423 C9orf92A6NGG3 77 aa8.41□□□□□ -1.06
TRIM28-209ENST00000597423 PCLOQ9Y6V0 5065 aa8.41□□□□□ -1.06
TRIM28-209ENST00000597423 TPRXLQ17RH7 258 aa8.38□□□□□ -1.07
TRIM28-209ENST00000597423 KRTAP13-3Q3SY46 172 aa8.38□□□□□ -1.07
TRIM28-209ENST00000597423 SMIM20Q8N5G0 67 aa8.38□□□□□ -1.07
TRIM28-209ENST00000597423 ATOX1O00244 68 aa8.37□□□□□ -1.07
TRIM28-209ENST00000597423 NDUFS5O43920 106 aa8.37□□□□□ -1.07
TRIM28-209ENST00000597423 TP53AIP1Q9HCN2 124 aa8.36□□□□□ -1.07
TRIM28-209ENST00000597423 KRTAP16-1A8MUX0 517 aa8.35□□□□□ -1.07
TRIM28-209ENST00000597423 Q8N9P0 234 aaPredicted RBP8.35□□□□□ -1.07
TRIM28-209ENST00000597423 C20orf166-AS1Q96NR2 134 aa8.31□□□□□ -1.08
TRIM28-209ENST00000597423 A8MUU9 505 aa8.3□□□□□ -1.08
TRIM28-209ENST00000597423 UQCRQO14949 82 aa8.3□□□□□ -1.08
TRIM28-209ENST00000597423 Q75L30 129 aa8.3□□□□□ -1.08
TRIM28-209ENST00000597423 TRAV7A0A075B6U4 112 aa8.28□□□□□ -1.08
TRIM28-209ENST00000597423 XP32Q5T750 250 aa8.28□□□□□ -1.08
TRIM28-209ENST00000597423 OCR1Q9BZK8 76 aa8.27□□□□□ -1.09
TRIM28-209ENST00000597423 C5orf47Q569G3 176 aa8.25□□□□□ -1.09
TRIM28-209ENST00000597423 ATP11AUNQ6ZP68 121 aa8.25□□□□□ -1.09
TRIM28-209ENST00000597423 RPL37P61927 97 aaKnown RBP8.24□□□□□ -1.09
TRIM28-209ENST00000597423 SERP2Q8N6R1 65 aa8.24□□□□□ -1.09
TRIM28-209ENST00000597423 ANAPC13Q9BS18 74 aa8.24□□□□□ -1.09
TRIM28-209ENST00000597423 MP68P56378 58 aa8.22□□□□□ -1.09
TRIM28-209ENST00000597423 ZCCHC13Q8WW36 166 aaKnown RBP8.22□□□□□ -1.09
TRIM28-209ENST00000597423 TRAV22A0A0B4J277 110 aa8.19□□□□□ -1.1
TRIM28-209ENST00000597423 SEC61BP60468 96 aaKnown RBP8.18□□□□□ -1.1
TRIM28-209ENST00000597423 H0Y9P7 68 aa8.17□□□□□ -1.1
TRIM28-209ENST00000597423 H3BPC8 53 aa8.17□□□□□ -1.1
TRIM28-209ENST00000597423 COX7CP15954 63 aa8.16□□□□□ -1.1
TRIM28-209ENST00000597423 Q5W150 140 aa8.15□□□□□ -1.1
TRIM28-209ENST00000597423 HERC1Q15751 4861 aa8.13□□□□□ -1.11
TRIM28-209ENST00000597423 LOC101927531A0A1B0GV80 90 aa8.11□□□□□ -1.11
TRIM28-209ENST00000597423 C1orf64Q8NEQ6 169 aa8.11□□□□□ -1.11
TRIM28-209ENST00000597423 LINC00208Q96KT6 92 aa8.11□□□□□ -1.11
TRIM28-209ENST00000597423 PCOTHQ58A44 107 aa8.1□□□□□ -1.11
TRIM28-209ENST00000597423 C20orf197Q8N268 126 aa8.07□□□□□ -1.12
TRIM28-209ENST00000597423 A0A0U1RQV1 116 aa8.05□□□□□ -1.12
TRIM28-209ENST00000597423 IGKV2-30P06310 120 aa8.05□□□□□ -1.12
TRIM28-209ENST00000597423 C7orf65Q6ZTY9 151 aa8.05□□□□□ -1.12
TRIM28-209ENST00000597423 HMCN2Q8NDA2 5059 aa8.04□□□□□ -1.12
TRIM28-209ENST00000597423 IGKV2D-30A0A075B6S6 120 aa8.04□□□□□ -1.12
TRIM28-209ENST00000597423 SPINK7P58062 85 aa8.03□□□□□ -1.12
TRIM28-209ENST00000597423 PCP4P48539 62 aa8.02□□□□□ -1.13
TRIM28-209ENST00000597423 CYP4F30PQ9H0H9 118 aa8.02□□□□□ -1.13
TRIM28-209ENST00000597423 LPAP08519 4548 aa8.02□□□□□ -1.13
TRIM28-209ENST00000597423 KLKP1Q107X0 134 aa8.01□□□□□ -1.13
TRIM28-209ENST00000597423 SNURFQ9Y675 71 aa8.01□□□□□ -1.13
TRIM28-209ENST00000597423 NDUFC1O43677 76 aa8□□□□□ -1.13
TRIM28-209ENST00000597423 CCDC179H3BU77 68 aa7.99□□□□□ -1.13
TRIM28-209ENST00000597423 LRP2P98164 4655 aa7.96□□□□□ -1.14
TRIM28-209ENST00000597423 HRES1P13985 223 aa7.87□□□□□ -1.15
TRIM28-209ENST00000597423 RBM12B-AS1Q9P1G2 102 aa7.87□□□□□ -1.15
TRIM28-209ENST00000597423 MUC17Q685J3 4493 aa7.86□□□□□ -1.15
TRIM28-209ENST00000597423 H7BZZ5 65 aa7.85□□□□□ -1.15
TRIM28-209ENST00000597423 SPANXA2-OT1Q8N9U9 137 aa7.85□□□□□ -1.15
TRIM28-209ENST00000597423 C4orf26Q17RF5 130 aa7.83□□□□□ -1.16
TRIM28-209ENST00000597423 CYSTM1Q9H1C7 97 aa7.81□□□□□ -1.16
TRIM28-209ENST00000597423 KRTAP4-1Q9BYQ7 146 aa7.8□□□□□ -1.16
TRIM28-209ENST00000597423 COX6B2Q6YFQ2 88 aa7.79□□□□□ -1.16
TRIM28-209ENST00000597423 A8MUN3 132 aa7.78□□□□□ -1.16
TRIM28-209ENST00000597423 TMEM258P61165 79 aa7.78□□□□□ -1.16
TRIM28-209ENST00000597423 FAM236DA0A1B0GTK5 79 aa7.77□□□□□ -1.17
TRIM28-209ENST00000597423 FAM236CP0DP71 79 aa7.77□□□□□ -1.17
TRIM28-209ENST00000597423 ATP5EP56381 51 aaPredicted RBP7.77□□□□□ -1.17
TRIM28-209ENST00000597423 MPLKIPQ8TAP9 179 aa7.76□□□□□ -1.17
TRIM28-209ENST00000597423 ACYP2P14621 99 aa7.73□□□□□ -1.17
TRIM28-209ENST00000597423 DMAC1Q96GE9 116 aa7.72□□□□□ -1.17
TRIM28-209ENST00000597423 H1FX-AS1Q4G0G2 97 aa7.69□□□□□ -1.18
TRIM28-209ENST00000597423 UBR4Q5T4S7 5183 aa7.67□□□□□ -1.18
TRIM28-209ENST00000597423 KRTAP3-1Q9BYR8 98 aa7.66□□□□□ -1.18
TRIM28-209ENST00000597423 RNF213Q63HN8 5207 aa7.64□□□□□ -1.19
TRIM28-209ENST00000597423 CHKB-CPT1BH3BT56 60 aa7.61□□□□□ -1.19
TRIM28-209ENST00000597423 S4R3F8 94 aa7.58□□□□□ -1.2
TRIM28-209ENST00000597423 MUC2Q02817 5179 aa7.57□□□□□ -1.2
TRIM28-209ENST00000597423 COA5Q86WW8 74 aa7.56□□□□□ -1.2
TRIM28-209ENST00000597423 SPTSSBQ8NFR3 76 aa7.56□□□□□ -1.2
TRIM28-209ENST00000597423 KRTAP19-2Q3LHN2 52 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 296.5 ms