RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 COX6CP09669 75 aa11.74□□□□□ -0.53
LSM4-202ENST00000593564 UBE2V1Q13404 147 aa11.74□□□□□ -0.53
LSM4-202ENST00000593564 A0A1B0GVX0 72 aa11.73□□□□□ -0.53
LSM4-202ENST00000593564 K7ERJ3 54 aa11.72□□□□□ -0.53
LSM4-202ENST00000593564 MTURNQ8N3F0 131 aa11.72□□□□□ -0.53
LSM4-202ENST00000593564 HSD52Q0P140 79 aa11.7□□□□□ -0.54
LSM4-202ENST00000593564 ZCCHC13Q8WW36 166 aaKnown RBP11.68□□□□□ -0.54
LSM4-202ENST00000593564 VPS25Q9BRG1 176 aa11.67□□□□□ -0.54
LSM4-202ENST00000593564 SPINK7P58062 85 aa11.64□□□□□ -0.55
LSM4-202ENST00000593564 RBM3P98179 157 aaKnown RBP11.63□□□□□ -0.55
LSM4-202ENST00000593564 J3KT08 172 aa11.62□□□□□ -0.55
LSM4-202ENST00000593564 DSCR8Q96T75 97 aa11.61□□□□□ -0.55
LSM4-202ENST00000593564 MACF1Q9UPN3 7388 aaKnown RBP11.59□□□□□ -0.55
LSM4-202ENST00000593564 C21orf62-AS1Q17RA5 79 aa11.58□□□□□ -0.56
LSM4-202ENST00000593564 Q8N9P0 234 aaPredicted RBP11.57□□□□□ -0.56
LSM4-202ENST00000593564 LINC00846Q9NV44 126 aa11.55□□□□□ -0.56
LSM4-202ENST00000593564 C9JAW5 83 aa11.53□□□□□ -0.56
LSM4-202ENST00000593564 SCGB1C2P0DMR2 95 aa11.53□□□□□ -0.56
LSM4-202ENST00000593564 PYY3Q5JQD4 70 aa11.53□□□□□ -0.56
LSM4-202ENST00000593564 Q6ZQT0 140 aa11.53□□□□□ -0.56
LSM4-202ENST00000593564 A8MWP4 228 aa11.52□□□□□ -0.57
LSM4-202ENST00000593564 NDUFB1O75438 58 aa11.52□□□□□ -0.57
LSM4-202ENST00000593564 KRTAP19-6Q3LI70 58 aa11.52□□□□□ -0.57
LSM4-202ENST00000593564 SYNE2Q8WXH0 6885 aaKnown RBP11.51□□□□□ -0.57
LSM4-202ENST00000593564 WFDC13Q8IUB5 93 aa11.49□□□□□ -0.57
LSM4-202ENST00000593564 BAALC-AS2P0C853 105 aa11.48□□□□□ -0.57
LSM4-202ENST00000593564 C8orf17Q9NRJ1 99 aa11.47□□□□□ -0.57
LSM4-202ENST00000593564 UQCR10Q9UDW1 63 aa11.47□□□□□ -0.57
LSM4-202ENST00000593564 LYRM7Q5U5X0 104 aa11.44□□□□□ -0.58
LSM4-202ENST00000593564 IGKV3D-7A0A0C4DH55 119 aa11.4□□□□□ -0.58
LSM4-202ENST00000593564 A0A1B0GW54 56 aa11.4□□□□□ -0.58
LSM4-202ENST00000593564 Q6ZVQ6 151 aa11.37□□□□□ -0.59
LSM4-202ENST00000593564 LOC110117498A0A087WWA1 95 aa11.36□□□□□ -0.59
LSM4-202ENST00000593564 JMJD7-PLA2G4BH0Y9G9 81 aa11.36□□□□□ -0.59
LSM4-202ENST00000593564 PDE6GP18545 87 aa11.31□□□□□ -0.6
LSM4-202ENST00000593564 PRR15Q8IV56 129 aa11.31□□□□□ -0.6
LSM4-202ENST00000593564 ATXN8Q156A1 80 aa11.3□□□□□ -0.6
LSM4-202ENST00000593564 H1FX-AS1Q4G0G2 97 aa11.28□□□□□ -0.6
LSM4-202ENST00000593564 TMEM254Q8TBM7 123 aa11.25□□□□□ -0.61
LSM4-202ENST00000593564 MRPL34Q9BQ48 92 aaKnown RBP11.25□□□□□ -0.61
LSM4-202ENST00000593564 MMP24-AS1A0A0U1RRL7 71 aa11.24□□□□□ -0.61
LSM4-202ENST00000593564 C14orf132Q9NPU4 83 aa11.24□□□□□ -0.61
LSM4-202ENST00000593564 NREPQ16612 68 aa11.22□□□□□ -0.61
LSM4-202ENST00000593564 NAA38Q9BRA0 125 aaKnown RBP11.21□□□□□ -0.61
LSM4-202ENST00000593564 KRTAP6-3Q3LI67 103 aa11.19□□□□□ -0.62
LSM4-202ENST00000593564 hDV103S1A0JD37 113 aa11.16□□□□□ -0.62
LSM4-202ENST00000593564 M0R143 59 aa11.16□□□□□ -0.62
LSM4-202ENST00000593564 NDUFS5O43920 106 aa11.14□□□□□ -0.63
LSM4-202ENST00000593564 K7EQZ3 153 aa11.12□□□□□ -0.63
LSM4-202ENST00000593564 TMA7Q9Y2S6 64 aaKnown RBP11.11□□□□□ -0.63
LSM4-202ENST00000593564 IGKV2D-30A0A075B6S6 120 aa11.09□□□□□ -0.63
LSM4-202ENST00000593564 IGKV2-30P06310 120 aa11.09□□□□□ -0.63
LSM4-202ENST00000593564 C7orf65Q6ZTY9 151 aa11.08□□□□□ -0.64
LSM4-202ENST00000593564 Q5W150 140 aa11.06□□□□□ -0.64
LSM4-202ENST00000593564 BPY2O14599 106 aa10.99□□□□□ -0.65
LSM4-202ENST00000593564 C4orf26Q17RF5 130 aa10.94□□□□□ -0.66
LSM4-202ENST00000593564 H3BT86 120 aa10.93□□□□□ -0.66
LSM4-202ENST00000593564 HCG22E2RYF7 251 aa10.91□□□□□ -0.66
LSM4-202ENST00000593564 CASC2Q6XLA1 102 aa10.91□□□□□ -0.66
LSM4-202ENST00000593564 NEBP20929 6669 aa10.88□□□□□ -0.67
LSM4-202ENST00000593564 C5orf47Q569G3 176 aa10.88□□□□□ -0.67
LSM4-202ENST00000593564 Q8N9L7 120 aa10.88□□□□□ -0.67
LSM4-202ENST00000593564 MUC12Q9UKN1 5478 aa10.87□□□□□ -0.67
LSM4-202ENST00000593564 CXCL6P80162 114 aa10.86□□□□□ -0.67
LSM4-202ENST00000593564 FAM236AA0A1B0GUQ0 79 aa10.85□□□□□ -0.67
LSM4-202ENST00000593564 FAM236BA0A1B0GV22 79 aa10.85□□□□□ -0.67
LSM4-202ENST00000593564 A6NN06 94 aa10.85□□□□□ -0.67
LSM4-202ENST00000593564 MT1BP07438 61 aa10.83□□□□□ -0.68
LSM4-202ENST00000593564 BATFQ16520 125 aa10.83□□□□□ -0.68
LSM4-202ENST00000593564 TSTD3H0UI37 97 aa10.8□□□□□ -0.68
LSM4-202ENST00000593564 Q5VV11 94 aa10.8□□□□□ -0.68
LSM4-202ENST00000593564 C9orf118A6NHY6 69 aa10.79□□□□□ -0.68
LSM4-202ENST00000593564 SMIM6P0DI80 62 aa10.79□□□□□ -0.68
LSM4-202ENST00000593564 KRTAP3-1Q9BYR8 98 aa10.79□□□□□ -0.68
LSM4-202ENST00000593564 S4R3F8 94 aa10.78□□□□□ -0.68
LSM4-202ENST00000593564 KRTAP19-8Q3LI54 63 aa10.77□□□□□ -0.69
LSM4-202ENST00000593564 SPRR2GQ9BYE4 73 aa10.77□□□□□ -0.69
LSM4-202ENST00000593564 A0A1W2PPM0 123 aa10.76□□□□□ -0.69
LSM4-202ENST00000593564 CSAG1Q6PB30 78 aa10.75□□□□□ -0.69
LSM4-202ENST00000593564 TAX1BP3O14907 124 aa10.72□□□□□ -0.69
LSM4-202ENST00000593564 LCA10Q71F78 164 aa10.7□□□□□ -0.7
LSM4-202ENST00000593564 C1orf64Q8NEQ6 169 aa10.7□□□□□ -0.7
LSM4-202ENST00000593564 KRTAP10-5P60370 271 aa10.67□□□□□ -0.7
LSM4-202ENST00000593564 UBL5Q9BZL1 73 aa10.62□□□□□ -0.71
LSM4-202ENST00000593564 KLKP1Q107X0 134 aa10.61□□□□□ -0.71
LSM4-202ENST00000593564 SMCPP49901 116 aaPredicted RBP10.59□□□□□ -0.71
LSM4-202ENST00000593564 SPCS1Q9Y6A9 102 aa10.58□□□□□ -0.72
LSM4-202ENST00000593564 KMT2DO14686 5537 aa10.54□□□□□ -0.72
LSM4-202ENST00000593564 KRTAP5-9P26371 169 aa10.54□□□□□ -0.72
LSM4-202ENST00000593564 TP53AIP1Q9HCN2 124 aa10.54□□□□□ -0.72
LSM4-202ENST00000593564 KRTAP20-1Q3LI63 56 aa10.53□□□□□ -0.72
LSM4-202ENST00000593564 KRTAP3-3Q9BYR6 98 aa10.52□□□□□ -0.73
LSM4-202ENST00000593564 MDN1Q9NU22 5596 aa10.51□□□□□ -0.73
LSM4-202ENST00000593564 CRIPTQ9P021 101 aa10.45□□□□□ -0.74
LSM4-202ENST00000593564 PRO0461Q9UI25 63 aa10.45□□□□□ -0.74
LSM4-202ENST00000593564 IMUPQ9GZP8 106 aa10.4□□□□□ -0.74
LSM4-202ENST00000593564 CYP4F30PQ9H0H9 118 aa10.4□□□□□ -0.74
LSM4-202ENST00000593564 A0A087WVE0 104 aa10.35□□□□□ -0.75
LSM4-202ENST00000593564 K7EP34 96 aa10.33□□□□□ -0.76
LSM4-202ENST00000593564 COL5A1-AS1Q5SY13 56 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms