RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 TRBV20-1A0A075B6N2 111 aa14.29□□□□□ -0.12
LIG3-208ENST00000586407 C8orf87E5RJ46 101 aa14.27□□□□□ -0.13
LIG3-208ENST00000586407 JMJD7-PLA2G4BH0Y9G9 81 aa14.27□□□□□ -0.13
LIG3-208ENST00000586407 C14orf132Q9NPU4 83 aa14.27□□□□□ -0.13
LIG3-208ENST00000586407 LOC110117498A0A087WWA1 95 aa14.26□□□□□ -0.13
LIG3-208ENST00000586407 LOC105371267A0A1B0GV96 52 aa14.24□□□□□ -0.13
LIG3-208ENST00000586407 J3KT08 172 aa14.23□□□□□ -0.13
LIG3-208ENST00000586407 C21orf62-AS1Q17RA5 79 aa14.23□□□□□ -0.13
LIG3-208ENST00000586407 LYRM7Q5U5X0 104 aa14.22□□□□□ -0.13
LIG3-208ENST00000586407 CRCT1Q9UGL9 99 aa14.21□□□□□ -0.13
LIG3-208ENST00000586407 HRES1P13985 223 aa14.18□□□□□ -0.14
LIG3-208ENST00000586407 FAM236DA0A1B0GTK5 79 aa14.15□□□□□ -0.14
LIG3-208ENST00000586407 FAM236CP0DP71 79 aa14.15□□□□□ -0.14
LIG3-208ENST00000586407 MTURNQ8N3F0 131 aa14.15□□□□□ -0.14
LIG3-208ENST00000586407 PDE6GP18545 87 aa14.14□□□□□ -0.15
LIG3-208ENST00000586407 C9orf118A6NHY6 69 aa14.13□□□□□ -0.15
LIG3-208ENST00000586407 NDUFB1O75438 58 aa14.13□□□□□ -0.15
LIG3-208ENST00000586407 TAX1BP3O14907 124 aa14.12□□□□□ -0.15
LIG3-208ENST00000586407 FSIP2Q5CZC0 6907 aa14.11□□□□□ -0.15
LIG3-208ENST00000586407 A8MWP4 228 aa14.11□□□□□ -0.15
LIG3-208ENST00000586407 MPLKIPQ8TAP9 179 aa14.11□□□□□ -0.15
LIG3-208ENST00000586407 C8orf17Q9NRJ1 99 aa14.11□□□□□ -0.15
LIG3-208ENST00000586407 IGKV3D-7A0A0C4DH55 119 aa14.1□□□□□ -0.15
LIG3-208ENST00000586407 A0A1B0GW54 56 aa14.1□□□□□ -0.15
LIG3-208ENST00000586407 ZCCHC13Q8WW36 166 aaKnown RBP14.1□□□□□ -0.15
LIG3-208ENST00000586407 A0A1W2PPM0 123 aa14.07□□□□□ -0.16
LIG3-208ENST00000586407 RBM12B-AS1Q9P1G2 102 aa14.05□□□□□ -0.16
LIG3-208ENST00000586407 Q8N9P0 234 aaPredicted RBP14.04□□□□□ -0.16
LIG3-208ENST00000586407 NREPQ16612 68 aa14.03□□□□□ -0.16
LIG3-208ENST00000586407 H3BT86 120 aa14.02□□□□□ -0.17
LIG3-208ENST00000586407 KRTAP9-8Q9BYQ0 159 aa14.02□□□□□ -0.17
LIG3-208ENST00000586407 SPINK7P58062 85 aa13.98□□□□□ -0.17
LIG3-208ENST00000586407 PRR15Q8IV56 129 aa13.98□□□□□ -0.17
LIG3-208ENST00000586407 Q6ZVQ6 151 aa13.96□□□□□ -0.17
LIG3-208ENST00000586407 MMP24-AS1A0A0U1RRL7 71 aa13.92□□□□□ -0.18
LIG3-208ENST00000586407 K7EQZ3 153 aa13.89□□□□□ -0.19
LIG3-208ENST00000586407 SPCS1Q9Y6A9 102 aa13.89□□□□□ -0.19
LIG3-208ENST00000586407 MT2AP02795 61 aa13.86□□□□□ -0.19
LIG3-208ENST00000586407 TMEM254Q8TBM7 123 aa13.84□□□□□ -0.19
LIG3-208ENST00000586407 MRPL34Q9BQ48 92 aaKnown RBP13.84□□□□□ -0.19
LIG3-208ENST00000586407 SMCPP49901 116 aaPredicted RBP13.83□□□□□ -0.2
LIG3-208ENST00000586407 WFDC13Q8IUB5 93 aa13.82□□□□□ -0.2
LIG3-208ENST00000586407 hDV103S1A0JD37 113 aa13.78□□□□□ -0.2
LIG3-208ENST00000586407 BPY2O14599 106 aa13.78□□□□□ -0.2
LIG3-208ENST00000586407 NDUFS5O43920 106 aa13.76□□□□□ -0.21
LIG3-208ENST00000586407 MT1FP04733 61 aa13.76□□□□□ -0.21
LIG3-208ENST00000586407 Q8N9L7 120 aa13.75□□□□□ -0.21
LIG3-208ENST00000586407 COL5A1-AS1Q5SY13 56 aa13.72□□□□□ -0.21
LIG3-208ENST00000586407 PRO0461Q9UI25 63 aa13.69□□□□□ -0.22
LIG3-208ENST00000586407 K7EP34 96 aa13.65□□□□□ -0.22
LIG3-208ENST00000586407 KRTAP10-10P60014 251 aa13.65□□□□□ -0.22
LIG3-208ENST00000586407 Q5W150 140 aa13.62□□□□□ -0.23
LIG3-208ENST00000586407 CASC2Q6XLA1 102 aa13.6□□□□□ -0.23
LIG3-208ENST00000586407 LINC00846Q9NV44 126 aa13.6□□□□□ -0.23
LIG3-208ENST00000586407 IGKV2D-30A0A075B6S6 120 aa13.59□□□□□ -0.23
LIG3-208ENST00000586407 IGKV2-30P06310 120 aa13.59□□□□□ -0.23
LIG3-208ENST00000586407 USH2AO75445 5202 aa13.58□□□□□ -0.23
LIG3-208ENST00000586407 KRTAP9-3Q9BYQ3 159 aa13.58□□□□□ -0.24
LIG3-208ENST00000586407 LCE2BO14633 110 aa13.56□□□□□ -0.24
LIG3-208ENST00000586407 HCG22E2RYF7 251 aa13.55□□□□□ -0.24
LIG3-208ENST00000586407 UBL5Q9BZL1 73 aa13.51□□□□□ -0.25
LIG3-208ENST00000586407 PCP4L1A6NKN8 68 aa13.5□□□□□ -0.25
LIG3-208ENST00000586407 C7orf65Q6ZTY9 151 aa13.48□□□□□ -0.25
LIG3-208ENST00000586407 H1FX-AS1Q4G0G2 97 aa13.46□□□□□ -0.25
LIG3-208ENST00000586407 SSPOA2VEC9 5147 aa13.46□□□□□ -0.25
LIG3-208ENST00000586407 GTF2H5Q6ZYL4 71 aa13.41□□□□□ -0.26
LIG3-208ENST00000586407 CXCL6P80162 114 aa13.38□□□□□ -0.27
LIG3-208ENST00000586407 ETDBQ3ZM63 59 aa13.36□□□□□ -0.27
LIG3-208ENST00000586407 C4orf26Q17RF5 130 aa13.35□□□□□ -0.27
LIG3-208ENST00000586407 F8W1H4 67 aa13.32□□□□□ -0.28
LIG3-208ENST00000586407 KRTAP19-1Q8IUB9 90 aa13.31□□□□□ -0.28
LIG3-208ENST00000586407 KRTAP9-1A8MXZ3 250 aaPredicted RBP13.25□□□□□ -0.29
LIG3-208ENST00000586407 FCGBPQ9Y6R7 5405 aaPredicted RBP13.17□□□□□ -0.3
LIG3-208ENST00000586407 KRTAP3-1Q9BYR8 98 aa13.15□□□□□ -0.3
LIG3-208ENST00000586407 TP53AIP1Q9HCN2 124 aa13.1□□□□□ -0.31
LIG3-208ENST00000586407 C5orf47Q569G3 176 aa13.08□□□□□ -0.32
LIG3-208ENST00000586407 KRTAP9-7A8MTY7 169 aa13.06□□□□□ -0.32
LIG3-208ENST00000586407 C1orf64Q8NEQ6 169 aa13.06□□□□□ -0.32
LIG3-208ENST00000586407 KRTAP19-6Q3LI70 58 aa13.01□□□□□ -0.33
LIG3-208ENST00000586407 S4R3F8 94 aa13.01□□□□□ -0.33
LIG3-208ENST00000586407 ACYP1P07311 99 aa12.95□□□□□ -0.34
LIG3-208ENST00000586407 LCA10Q71F78 164 aa12.94□□□□□ -0.34
LIG3-208ENST00000586407 CYP4F30PQ9H0H9 118 aa12.91□□□□□ -0.34
LIG3-208ENST00000586407 FAM236AA0A1B0GUQ0 79 aa12.89□□□□□ -0.35
LIG3-208ENST00000586407 FAM236BA0A1B0GV22 79 aa12.89□□□□□ -0.35
LIG3-208ENST00000586407 FAM240AA0A1B0GVK7 77 aa12.89□□□□□ -0.35
LIG3-208ENST00000586407 TRAV22A0A0B4J277 110 aa12.88□□□□□ -0.35
LIG3-208ENST00000586407 HIST1H4AP62805 103 aaKnown RBP12.88□□□□□ -0.35
LIG3-208ENST00000586407 CSAG1Q6PB30 78 aa12.87□□□□□ -0.35
LIG3-208ENST00000586407 ATP5EP2Q5VTU8 51 aa12.85□□□□□ -0.35
LIG3-208ENST00000586407 A0A087WVE0 104 aa12.8□□□□□ -0.36
LIG3-208ENST00000586407 LOC101927531A0A1B0GV80 90 aa12.79□□□□□ -0.36
LIG3-208ENST00000586407 KRTAP3-3Q9BYR6 98 aa12.77□□□□□ -0.37
LIG3-208ENST00000586407 A0A1B0GV90 55 aa12.74□□□□□ -0.37
LIG3-208ENST00000586407 H0Y9P7 68 aa12.73□□□□□ -0.37
LIG3-208ENST00000586407 UQCRQO14949 82 aa12.72□□□□□ -0.37
LIG3-208ENST00000586407 MACF1Q9UPN3 7388 aaKnown RBP12.69□□□□□ -0.38
LIG3-208ENST00000586407 LINC00643Q86TS7 51 aa12.68□□□□□ -0.38
LIG3-208ENST00000586407 MT1BP07438 61 aa12.63□□□□□ -0.39
LIG3-208ENST00000586407 ATOX1O00244 68 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms