RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 J3KT08 172 aa14.03□□□□□ -0.16
SHMT1-207ENST00000580002 A8MWP4 228 aa14.02□□□□□ -0.16
SHMT1-207ENST00000580002 NOTCH2NLQ7Z3S9 236 aa14.01□□□□□ -0.17
SHMT1-207ENST00000580002 A0A087WVE0 104 aa13.99□□□□□ -0.17
SHMT1-207ENST00000580002 HIST1H4AP62805 103 aaKnown RBP13.99□□□□□ -0.17
SHMT1-207ENST00000580002 IGHV6-1A0A0B4J1U7 121 aa13.99□□□□□ -0.17
SHMT1-207ENST00000580002 PRR15Q8IV56 129 aa13.98□□□□□ -0.17
SHMT1-207ENST00000580002 HERC1Q15751 4861 aa13.98□□□□□ -0.17
SHMT1-207ENST00000580002 A0A1B0GVX0 72 aa13.96□□□□□ -0.18
SHMT1-207ENST00000580002 NDUFB1O75438 58 aa13.93□□□□□ -0.18
SHMT1-207ENST00000580002 PRR4Q16378 134 aa13.91□□□□□ -0.18
SHMT1-207ENST00000580002 IGLV7-46A0A075B6I9 117 aa13.87□□□□□ -0.19
SHMT1-207ENST00000580002 C9orf92A6NGG3 77 aa13.87□□□□□ -0.19
SHMT1-207ENST00000580002 C8orf17Q9NRJ1 99 aa13.87□□□□□ -0.19
SHMT1-207ENST00000580002 MMP24-AS1A0A0U1RRL7 71 aa13.86□□□□□ -0.19
SHMT1-207ENST00000580002 PCP4P48539 62 aa13.86□□□□□ -0.19
SHMT1-207ENST00000580002 FP248Q71RG6 208 aaPredicted RBP13.84□□□□□ -0.19
SHMT1-207ENST00000580002 WFDC13Q8IUB5 93 aa13.84□□□□□ -0.19
SHMT1-207ENST00000580002 LPAP08519 4548 aa13.84□□□□□ -0.19
SHMT1-207ENST00000580002 LINC00313P59037 77 aa13.82□□□□□ -0.2
SHMT1-207ENST00000580002 HCG22E2RYF7 251 aa13.78□□□□□ -0.2
SHMT1-207ENST00000580002 FAM236AA0A1B0GUQ0 79 aa13.76□□□□□ -0.21
SHMT1-207ENST00000580002 FAM236BA0A1B0GV22 79 aa13.76□□□□□ -0.21
SHMT1-207ENST00000580002 KRTAP16-1A8MUX0 517 aa13.76□□□□□ -0.21
SHMT1-207ENST00000580002 hDV103S1A0JD37 113 aa13.75□□□□□ -0.21
SHMT1-207ENST00000580002 C8orf87E5RJ46 101 aa13.75□□□□□ -0.21
SHMT1-207ENST00000580002 KRTAP13-3Q3SY46 172 aa13.75□□□□□ -0.21
SHMT1-207ENST00000580002 CASC2Q6XLA1 102 aa13.75□□□□□ -0.21
SHMT1-207ENST00000580002 HMCN2Q8NDA2 5059 aa13.68□□□□□ -0.22
SHMT1-207ENST00000580002 MRPL34Q9BQ48 92 aaKnown RBP13.66□□□□□ -0.22
SHMT1-207ENST00000580002 ANAPC13Q9BS18 74 aa13.66□□□□□ -0.22
SHMT1-207ENST00000580002 TMEM254Q8TBM7 123 aa13.65□□□□□ -0.22
SHMT1-207ENST00000580002 LRP2P98164 4655 aa13.65□□□□□ -0.22
SHMT1-207ENST00000580002 ATOX1O00244 68 aa13.63□□□□□ -0.23
SHMT1-207ENST00000580002 TPRXLQ17RH7 258 aa13.61□□□□□ -0.23
SHMT1-207ENST00000580002 XP32Q5T750 250 aa13.6□□□□□ -0.23
SHMT1-207ENST00000580002 NDUFS5O43920 106 aa13.57□□□□□ -0.24
SHMT1-207ENST00000580002 Q8N9P0 234 aaPredicted RBP13.57□□□□□ -0.24
SHMT1-207ENST00000580002 C20orf166-AS1Q96NR2 134 aa13.53□□□□□ -0.24
SHMT1-207ENST00000580002 A8MUU9 505 aa13.52□□□□□ -0.25
SHMT1-207ENST00000580002 OCR1Q9BZK8 76 aa13.49□□□□□ -0.25
SHMT1-207ENST00000580002 Q5W150 140 aa13.46□□□□□ -0.25
SHMT1-207ENST00000580002 SMIM20Q8N5G0 67 aa13.45□□□□□ -0.26
SHMT1-207ENST00000580002 Q75L30 129 aa13.45□□□□□ -0.26
SHMT1-207ENST00000580002 SERP2Q8N6R1 65 aa13.43□□□□□ -0.26
SHMT1-207ENST00000580002 RPL37P61927 97 aaKnown RBP13.42□□□□□ -0.26
SHMT1-207ENST00000580002 COX7CP15954 63 aa13.4□□□□□ -0.26
SHMT1-207ENST00000580002 UQCRQO14949 82 aa13.38□□□□□ -0.27
SHMT1-207ENST00000580002 TRAV7A0A075B6U4 112 aa13.36□□□□□ -0.27
SHMT1-207ENST00000580002 TP53AIP1Q9HCN2 124 aa13.35□□□□□ -0.27
SHMT1-207ENST00000580002 ZCCHC13Q8WW36 166 aaKnown RBP13.34□□□□□ -0.27
SHMT1-207ENST00000580002 CCDC179H3BU77 68 aa13.33□□□□□ -0.28
SHMT1-207ENST00000580002 PCOTHQ58A44 107 aa13.3□□□□□ -0.28
SHMT1-207ENST00000580002 ATP11AUNQ6ZP68 121 aa13.28□□□□□ -0.28
SHMT1-207ENST00000580002 MUC17Q685J3 4493 aa13.27□□□□□ -0.29
SHMT1-207ENST00000580002 H0Y9P7 68 aa13.26□□□□□ -0.29
SHMT1-207ENST00000580002 TRAV22A0A0B4J277 110 aa13.25□□□□□ -0.29
SHMT1-207ENST00000580002 C5orf47Q569G3 176 aa13.2□□□□□ -0.3
SHMT1-207ENST00000580002 LINC00208Q96KT6 92 aa13.17□□□□□ -0.3
SHMT1-207ENST00000580002 IGKV2D-30A0A075B6S6 120 aa13.13□□□□□ -0.31
SHMT1-207ENST00000580002 IGKV2-30P06310 120 aa13.13□□□□□ -0.31
SHMT1-207ENST00000580002 MP68P56378 58 aa13.13□□□□□ -0.31
SHMT1-207ENST00000580002 C20orf197Q8N268 126 aa13.13□□□□□ -0.31
SHMT1-207ENST00000580002 KRTAP4-1Q9BYQ7 146 aa13.13□□□□□ -0.31
SHMT1-207ENST00000580002 SNURFQ9Y675 71 aa13.13□□□□□ -0.31
SHMT1-207ENST00000580002 SEC61BP60468 96 aaKnown RBP13.12□□□□□ -0.31
SHMT1-207ENST00000580002 C1orf64Q8NEQ6 169 aa13.12□□□□□ -0.31
SHMT1-207ENST00000580002 UBR4Q5T4S7 5183 aa13.12□□□□□ -0.31
SHMT1-207ENST00000580002 A0A0U1RQV1 116 aa13.09□□□□□ -0.31
SHMT1-207ENST00000580002 KLKP1Q107X0 134 aa13.09□□□□□ -0.31
SHMT1-207ENST00000580002 SPINK7P58062 85 aa13.07□□□□□ -0.32
SHMT1-207ENST00000580002 CYSTM1Q9H1C7 97 aa13.06□□□□□ -0.32
SHMT1-207ENST00000580002 CYP4F30PQ9H0H9 118 aa13.04□□□□□ -0.32
SHMT1-207ENST00000580002 MUC2Q02817 5179 aa13.03□□□□□ -0.32
SHMT1-207ENST00000580002 LOC101927531A0A1B0GV80 90 aa13.02□□□□□ -0.33
SHMT1-207ENST00000580002 H3BPC8 53 aa12.99□□□□□ -0.33
SHMT1-207ENST00000580002 C7orf65Q6ZTY9 151 aa12.99□□□□□ -0.33
SHMT1-207ENST00000580002 NDUFC1O43677 76 aa12.97□□□□□ -0.33
SHMT1-207ENST00000580002 RNF213Q63HN8 5207 aa12.95□□□□□ -0.34
SHMT1-207ENST00000580002 TMEM258P61165 79 aa12.92□□□□□ -0.34
SHMT1-207ENST00000580002 H7BZZ5 65 aa12.9□□□□□ -0.34
SHMT1-207ENST00000580002 HRES1P13985 223 aa12.89□□□□□ -0.35
SHMT1-207ENST00000580002 C4orf26Q17RF5 130 aa12.84□□□□□ -0.35
SHMT1-207ENST00000580002 MPLKIPQ8TAP9 179 aa12.75□□□□□ -0.37
SHMT1-207ENST00000580002 FAM236DA0A1B0GTK5 79 aa12.74□□□□□ -0.37
SHMT1-207ENST00000580002 FAM236CP0DP71 79 aa12.74□□□□□ -0.37
SHMT1-207ENST00000580002 ATP5EP56381 51 aaPredicted RBP12.73□□□□□ -0.37
SHMT1-207ENST00000580002 KRTAP3-1Q9BYR8 98 aa12.72□□□□□ -0.37
SHMT1-207ENST00000580002 KRTAP19-2Q3LHN2 52 aa12.66□□□□□ -0.38
SHMT1-207ENST00000580002 COX6B2Q6YFQ2 88 aa12.64□□□□□ -0.39
SHMT1-207ENST00000580002 SPANXA2-OT1Q8N9U9 137 aa12.59□□□□□ -0.39
SHMT1-207ENST00000580002 RBM12B-AS1Q9P1G2 102 aa12.59□□□□□ -0.39
SHMT1-207ENST00000580002 RPS28P62857 69 aaKnown RBP12.53□□□□□ -0.4
SHMT1-207ENST00000580002 DMAC1Q96GE9 116 aa12.52□□□□□ -0.41
SHMT1-207ENST00000580002 FAT4Q6V0I7 4981 aa12.52□□□□□ -0.41
SHMT1-207ENST00000580002 LCE2CQ5TA81 110 aa12.51□□□□□ -0.41
SHMT1-207ENST00000580002 SERP1Q9Y6X1 66 aa12.49□□□□□ -0.41
SHMT1-207ENST00000580002 H1FX-AS1Q4G0G2 97 aa12.43□□□□□ -0.42
SHMT1-207ENST00000580002 FLGP20930 4061 aaPredicted RBP12.42□□□□□ -0.42
SHMT1-207ENST00000580002 A8MUN3 132 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms