RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 VPS13BQ7Z7G8 4022 aa0.97□□□□□ -2.25
SMCHD1-202ENST00000577300 SRRM2Q9UQ35 2752 aaKnown RBP0.96□□□□□ -2.25
SMCHD1-202ENST00000577300 DMDP11532 3685 aa0.96□□□□□ -2.26
SMCHD1-202ENST00000577300 RP1L1Q8IWN7 2480 aaPredicted RBP0.96□□□□□ -2.26
SMCHD1-202ENST00000577300 KMT2AQ03164 3969 aa0.96□□□□□ -2.26
SMCHD1-202ENST00000577300 DYNC2H1Q8NCM8 4307 aaKnown RBP0.96□□□□□ -2.26
SMCHD1-202ENST00000577300 DNAH10Q8IVF4 4471 aa0.96□□□□□ -2.26
SMCHD1-202ENST00000577300 PKD1L2Q7Z442 2459 aa0.96□□□□□ -2.26
SMCHD1-202ENST00000577300 VWFP04275 2813 aa0.96□□□□□ -2.26
SMCHD1-202ENST00000577300 CEP350Q5VT06 3117 aa0.95□□□□□ -2.26
SMCHD1-202ENST00000577300 DNAH2Q9P225 4427 aa0.95□□□□□ -2.26
SMCHD1-202ENST00000577300 UBR5O95071 2799 aaPredicted RBP0.95□□□□□ -2.26
SMCHD1-202ENST00000577300 H3BNG1 76 aa0.95□□□□□ -2.26
SMCHD1-202ENST00000577300 SPART-AS1P0CW21 52 aa0.95□□□□□ -2.26
SMCHD1-202ENST00000577300 U3KQA8 63 aa0.95□□□□□ -2.26
SMCHD1-202ENST00000577300 TRANK1O15050 2925 aa0.95□□□□□ -2.26
SMCHD1-202ENST00000577300 F8P00451 2351 aa0.94□□□□□ -2.26
SMCHD1-202ENST00000577300 CRYBG3Q68DQ2 2970 aa0.94□□□□□ -2.26
SMCHD1-202ENST00000577300 CCDC168Q8NDH2 2452 aa0.94□□□□□ -2.26
SMCHD1-202ENST00000577300 PKHD1L1Q86WI1 4243 aa0.94□□□□□ -2.26
SMCHD1-202ENST00000577300 KRTAP2-3P0C7H8 128 aa0.94□□□□□ -2.26
SMCHD1-202ENST00000577300 KRTAP2-4Q9BYR9 128 aa0.94□□□□□ -2.26
SMCHD1-202ENST00000577300 KRTAP2-1Q9BYU5 128 aa0.94□□□□□ -2.26
SMCHD1-202ENST00000577300 AKAP13Q12802 2813 aa0.94□□□□□ -2.26
SMCHD1-202ENST00000577300 DNAH7Q8WXX0 4024 aa0.93□□□□□ -2.26
SMCHD1-202ENST00000577300 ABCA12Q86UK0 2595 aa0.93□□□□□ -2.26
SMCHD1-202ENST00000577300 TNP1P09430 55 aa0.93□□□□□ -2.26
SMCHD1-202ENST00000577300 SPENQ96T58 3664 aaKnown RBP0.93□□□□□ -2.26
SMCHD1-202ENST00000577300 MEGF8Q7Z7M0 2845 aa0.93□□□□□ -2.26
SMCHD1-202ENST00000577300 CSMD3Q7Z407 3707 aa0.93□□□□□ -2.26
SMCHD1-202ENST00000577300 PRKDCP78527 4128 aaKnown RBP0.93□□□□□ -2.26
SMCHD1-202ENST00000577300 NAV2Q8IVL1 2488 aa0.93□□□□□ -2.26
SMCHD1-202ENST00000577300 SPTBN5Q9NRC6 3674 aaKnown RBP0.93□□□□□ -2.26
SMCHD1-202ENST00000577300 FRAS1Q86XX4 4008 aa0.92□□□□□ -2.26
SMCHD1-202ENST00000577300 DNAH3Q8TD57 4116 aa0.92□□□□□ -2.26
SMCHD1-202ENST00000577300 ANK3Q12955 4377 aaKnown RBP0.92□□□□□ -2.26
SMCHD1-202ENST00000577300 PRUNE2Q8WUY3 3088 aa0.92□□□□□ -2.26
SMCHD1-202ENST00000577300 KRTAP10-4P60372 401 aaPredicted RBP0.92□□□□□ -2.26
SMCHD1-202ENST00000577300 TTC28Q96AY4 2481 aa0.92□□□□□ -2.26
SMCHD1-202ENST00000577300 CEP250Q9BV73 2442 aa0.91□□□□□ -2.26
SMCHD1-202ENST00000577300 ZNF469Q96JG9 3925 aaPredicted RBP0.91□□□□□ -2.26
SMCHD1-202ENST00000577300 CEP290O15078 2479 aa0.91□□□□□ -2.26
SMCHD1-202ENST00000577300 HTN3P15516 51 aa0.91□□□□□ -2.26
SMCHD1-202ENST00000577300 DNAH1Q9P2D7 4330 aa0.91□□□□□ -2.26
SMCHD1-202ENST00000577300 SZT2Q5T011 3432 aa0.9□□□□□ -2.26
SMCHD1-202ENST00000577300 RELNP78509 3460 aa0.9□□□□□ -2.26
SMCHD1-202ENST00000577300 FAT2Q9NYQ8 4349 aa0.9□□□□□ -2.27
SMCHD1-202ENST00000577300 ITPR1Q14643 2758 aa0.9□□□□□ -2.27
SMCHD1-202ENST00000577300 DEFB4AO15263 64 aa0.9□□□□□ -2.27
SMCHD1-202ENST00000577300 DEFB135Q30KP9 77 aa0.9□□□□□ -2.27
SMCHD1-202ENST00000577300 CMYA5Q8N3K9 4069 aa0.9□□□□□ -2.27
SMCHD1-202ENST00000577300 NBEAQ8NFP9 2946 aa0.9□□□□□ -2.27
SMCHD1-202ENST00000577300 HSPG2P98160 4391 aa0.9□□□□□ -2.27
SMCHD1-202ENST00000577300 APOBP04114 4563 aaKnown RBP0.9□□□□□ -2.27
SMCHD1-202ENST00000577300 MKI67P46013 3256 aaKnown RBP0.9□□□□□ -2.27
SMCHD1-202ENST00000577300 HIVEP3Q5T1R4 2406 aa0.89□□□□□ -2.27
SMCHD1-202ENST00000577300 ANK2Q01484 3957 aa0.89□□□□□ -2.27
SMCHD1-202ENST00000577300 CFAP54Q96N23 3096 aa0.89□□□□□ -2.27
SMCHD1-202ENST00000577300 SETD2Q9BYW2 2564 aaPredicted RBP0.89□□□□□ -2.27
SMCHD1-202ENST00000577300 SMR3AQ99954 134 aa0.89□□□□□ -2.27
SMCHD1-202ENST00000577300 ZNF292O60281 2723 aa0.89□□□□□ -2.27
SMCHD1-202ENST00000577300 CREBBPQ92793 2442 aa0.89□□□□□ -2.27
SMCHD1-202ENST00000577300 HUWE1Q7Z6Z7 4374 aaKnown RBP0.89□□□□□ -2.27
SMCHD1-202ENST00000577300 RANBP2P49792 3224 aaKnown RBP0.89□□□□□ -2.27
SMCHD1-202ENST00000577300 HECTD1Q9ULT8 2610 aa0.88□□□□□ -2.27
SMCHD1-202ENST00000577300 ZZEF1O43149 2961 aa0.88□□□□□ -2.27
SMCHD1-202ENST00000577300 C5orf42Q9H799 3197 aa0.88□□□□□ -2.27
SMCHD1-202ENST00000577300 NBASA2RRP1 2371 aa0.88□□□□□ -2.27
SMCHD1-202ENST00000577300 DNAH9Q9NYC9 4486 aa0.87□□□□□ -2.27
SMCHD1-202ENST00000577300 SMG1Q96Q15 3661 aaKnown RBP0.87□□□□□ -2.27
SMCHD1-202ENST00000577300 FAT3Q8TDW7 4589 aa0.87□□□□□ -2.27
SMCHD1-202ENST00000577300 DNAH17Q9UFH2 4485 aa0.87□□□□□ -2.27
SMCHD1-202ENST00000577300 PLECQ15149 4684 aaKnown RBP0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 LAMA5O15230 3695 aa0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 PKD1P98161 4303 aa0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 DNAH5Q8TE73 4624 aa0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 BOD1L1Q8NFC6 3051 aa0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 TRRAPQ9Y4A5 3859 aa0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 CHD9Q3L8U1 2897 aa0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 C9orf92A6NGG3 77 aa0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 M0R2T5 61 aa0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 KRTAP8-1Q8IUC2 63 aa0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 FRYLO94915 3013 aa0.86□□□□□ -2.27
SMCHD1-202ENST00000577300 PIEZO1Q92508 2521 aa0.85□□□□□ -2.27
SMCHD1-202ENST00000577300 PDZD2O15018 2839 aa0.85□□□□□ -2.27
SMCHD1-202ENST00000577300 CFAP47Q6ZTR5 3102 aa0.85□□□□□ -2.27
SMCHD1-202ENST00000577300 DCHS2Q6V1P9 2916 aa0.85□□□□□ -2.27
SMCHD1-202ENST00000577300 DNAH6Q9C0G6 4158 aa0.85□□□□□ -2.27
SMCHD1-202ENST00000577300 NF1P21359 2839 aa0.85□□□□□ -2.27
SMCHD1-202ENST00000577300 DMXL1Q9Y485 3027 aa0.85□□□□□ -2.27
SMCHD1-202ENST00000577300 PTPN13Q12923 2485 aa0.84□□□□□ -2.27
SMCHD1-202ENST00000577300 FLGP20930 4061 aaPredicted RBP0.84□□□□□ -2.27
SMCHD1-202ENST00000577300 COL7A1Q02388 2944 aa0.84□□□□□ -2.27
SMCHD1-202ENST00000577300 HTTP42858 3142 aa0.84□□□□□ -2.27
SMCHD1-202ENST00000577300 MAP1BP46821 2468 aaKnown RBP0.84□□□□□ -2.28
SMCHD1-202ENST00000577300 ITPR3Q14573 2671 aa0.84□□□□□ -2.28
SMCHD1-202ENST00000577300 DNAH12Q6ZR08 3092 aa0.84□□□□□ -2.28
SMCHD1-202ENST00000577300 TENM4Q6N022 2769 aa0.84□□□□□ -2.28
SMCHD1-202ENST00000577300 CSMD1Q96PZ7 3565 aa0.83□□□□□ -2.28
SMCHD1-202ENST00000577300 TRIOO75962 3097 aa0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms