RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 VAMP8Q9BV40 100 aa9.01□□□□□ -0.97
NUP88-203ENST00000572019 GHRHP01286 108 aa8.99□□□□□ -0.97
NUP88-203ENST00000572019 SPATA45Q537H7 98 aa8.99□□□□□ -0.97
NUP88-203ENST00000572019 PAM16Q9Y3D7 125 aa8.99□□□□□ -0.97
NUP88-203ENST00000572019 HIGD1BQ9P298 99 aa8.98□□□□□ -0.97
NUP88-203ENST00000572019 PRO1854Q9UHT4 67 aa8.98□□□□□ -0.97
NUP88-203ENST00000572019 ORMDL1Q9P0S3 153 aa8.97□□□□□ -0.97
NUP88-203ENST00000572019 FXYD2P54710 66 aa8.95□□□□□ -0.98
NUP88-203ENST00000572019 CEND1Q8N111 149 aa8.95□□□□□ -0.98
NUP88-203ENST00000572019 VPS25Q9BRG1 176 aa8.93□□□□□ -0.98
NUP88-203ENST00000572019 MUC12Q9UKN1 5478 aa8.91□□□□□ -0.98
NUP88-203ENST00000572019 DNAL4O96015 105 aa8.91□□□□□ -0.98
NUP88-203ENST00000572019 TMEM256-PLSCR3K7ERE1 68 aa8.89□□□□□ -0.99
NUP88-203ENST00000572019 K7ERJ3 54 aa8.87□□□□□ -0.99
NUP88-203ENST00000572019 UBE2V1Q13404 147 aa8.85□□□□□ -0.99
NUP88-203ENST00000572019 TMEM238LA0A1B0GVL6 79 aa8.83□□□□□ -1
NUP88-203ENST00000572019 A6NJY4 79 aa8.83□□□□□ -1
NUP88-203ENST00000572019 H3BQ85 93 aa8.83□□□□□ -1
NUP88-203ENST00000572019 SMIM6P0DI80 62 aa8.83□□□□□ -1
NUP88-203ENST00000572019 KRTAP20-1Q3LI63 56 aa8.83□□□□□ -1
NUP88-203ENST00000572019 H1FX-AS1Q4G0G2 97 aa8.83□□□□□ -1
NUP88-203ENST00000572019 C8orf17Q9NRJ1 99 aa8.83□□□□□ -1
NUP88-203ENST00000572019 PSMB2P49721 201 aa8.82□□□□□ -1
NUP88-203ENST00000572019 LYRM7Q5U5X0 104 aa8.82□□□□□ -1
NUP88-203ENST00000572019 UQCR10Q9UDW1 63 aa8.82□□□□□ -1
NUP88-203ENST00000572019 J3KT08 172 aa8.81□□□□□ -1
NUP88-203ENST00000572019 LOC105371267A0A1B0GV96 52 aa8.79□□□□□ -1
NUP88-203ENST00000572019 RBM3P98179 157 aaKnown RBP8.79□□□□□ -1
NUP88-203ENST00000572019 Q6ZQT0 140 aa8.79□□□□□ -1
NUP88-203ENST00000572019 MT1BP07438 61 aa8.78□□□□□ -1
NUP88-203ENST00000572019 HSD52Q0P140 79 aa8.78□□□□□ -1
NUP88-203ENST00000572019 IGKV3D-7A0A0C4DH55 119 aa8.77□□□□□ -1.01
NUP88-203ENST00000572019 A6NN06 94 aa8.77□□□□□ -1.01
NUP88-203ENST00000572019 DSCR8Q96T75 97 aa8.76□□□□□ -1.01
NUP88-203ENST00000572019 NDUFB1O75438 58 aa8.75□□□□□ -1.01
NUP88-203ENST00000572019 Q6ZVQ6 151 aa8.74□□□□□ -1.01
NUP88-203ENST00000572019 COX6CP09669 75 aa8.71□□□□□ -1.02
NUP88-203ENST00000572019 C9JAW5 83 aa8.7□□□□□ -1.02
NUP88-203ENST00000572019 KRTAP5-9P26371 169 aa8.66□□□□□ -1.02
NUP88-203ENST00000572019 MMP24-AS1A0A0U1RRL7 71 aa8.65□□□□□ -1.02
NUP88-203ENST00000572019 BAALC-AS2P0C853 105 aa8.65□□□□□ -1.02
NUP88-203ENST00000572019 TSTD3H0UI37 97 aa8.64□□□□□ -1.03
NUP88-203ENST00000572019 PRR15Q8IV56 129 aa8.64□□□□□ -1.03
NUP88-203ENST00000572019 MRPL34Q9BQ48 92 aaKnown RBP8.63□□□□□ -1.03
NUP88-203ENST00000572019 IGKV2D-30A0A075B6S6 120 aa8.62□□□□□ -1.03
NUP88-203ENST00000572019 IGKV2-30P06310 120 aa8.62□□□□□ -1.03
NUP88-203ENST00000572019 KRTAP10-5P60370 271 aa8.62□□□□□ -1.03
NUP88-203ENST00000572019 KRTAP19-8Q3LI54 63 aa8.62□□□□□ -1.03
NUP88-203ENST00000572019 M0R143 59 aa8.61□□□□□ -1.03
NUP88-203ENST00000572019 C21orf62-AS1Q17RA5 79 aa8.61□□□□□ -1.03
NUP88-203ENST00000572019 Q5VV11 94 aa8.61□□□□□ -1.03
NUP88-203ENST00000572019 TMEM254Q8TBM7 123 aa8.61□□□□□ -1.03
NUP88-203ENST00000572019 KMT2DO14686 5537 aa8.6□□□□□ -1.03
NUP88-203ENST00000572019 Q5W150 140 aa8.6□□□□□ -1.03
NUP88-203ENST00000572019 SCGB1C2P0DMR2 95 aa8.59□□□□□ -1.03
NUP88-203ENST00000572019 C5orf47Q569G3 176 aa8.58□□□□□ -1.04
NUP88-203ENST00000572019 SPRR2GQ9BYE4 73 aa8.57□□□□□ -1.04
NUP88-203ENST00000572019 FAM236AA0A1B0GUQ0 79 aa8.56□□□□□ -1.04
NUP88-203ENST00000572019 FAM236BA0A1B0GV22 79 aa8.56□□□□□ -1.04
NUP88-203ENST00000572019 LOC110117498A0A087WWA1 95 aa8.55□□□□□ -1.04
NUP88-203ENST00000572019 NDUFS5O43920 106 aa8.55□□□□□ -1.04
NUP88-203ENST00000572019 C4orf26Q17RF5 130 aa8.55□□□□□ -1.04
NUP88-203ENST00000572019 MDN1Q9NU22 5596 aa8.54□□□□□ -1.04
NUP88-203ENST00000572019 hDV103S1A0JD37 113 aa8.52□□□□□ -1.05
NUP88-203ENST00000572019 K7EQZ3 153 aa8.52□□□□□ -1.05
NUP88-203ENST00000572019 C7orf65Q6ZTY9 151 aa8.52□□□□□ -1.05
NUP88-203ENST00000572019 C14orf132Q9NPU4 83 aa8.51□□□□□ -1.05
NUP88-203ENST00000572019 A0A1B0GW54 56 aa8.48□□□□□ -1.05
NUP88-203ENST00000572019 KRTAP3-1Q9BYR8 98 aa8.48□□□□□ -1.05
NUP88-203ENST00000572019 NREPQ16612 68 aa8.47□□□□□ -1.05
NUP88-203ENST00000572019 JMJD7-PLA2G4BH0Y9G9 81 aa8.46□□□□□ -1.06
NUP88-203ENST00000572019 NAA38Q9BRA0 125 aaKnown RBP8.46□□□□□ -1.06
NUP88-203ENST00000572019 KRTAP2-3P0C7H8 128 aa8.44□□□□□ -1.06
NUP88-203ENST00000572019 KRTAP2-4Q9BYR9 128 aa8.44□□□□□ -1.06
NUP88-203ENST00000572019 BATFQ16520 125 aa8.41□□□□□ -1.06
NUP88-203ENST00000572019 PDE6GP18545 87 aa8.4□□□□□ -1.06
NUP88-203ENST00000572019 ATXN8Q156A1 80 aa8.4□□□□□ -1.06
NUP88-203ENST00000572019 LCA10Q71F78 164 aa8.38□□□□□ -1.07
NUP88-203ENST00000572019 S4R3F8 94 aa8.38□□□□□ -1.07
NUP88-203ENST00000572019 C9orf118A6NHY6 69 aa8.36□□□□□ -1.07
NUP88-203ENST00000572019 TAX1BP3O14907 124 aa8.36□□□□□ -1.07
NUP88-203ENST00000572019 HCG22E2RYF7 251 aa8.35□□□□□ -1.07
NUP88-203ENST00000572019 KLKP1Q107X0 134 aa8.35□□□□□ -1.07
NUP88-203ENST00000572019 CSAG1Q6PB30 78 aa8.35□□□□□ -1.07
NUP88-203ENST00000572019 Q8N9L7 120 aa8.35□□□□□ -1.07
NUP88-203ENST00000572019 SMCPP49901 116 aaPredicted RBP8.32□□□□□ -1.08
NUP88-203ENST00000572019 A0A1W2PPM0 123 aa8.31□□□□□ -1.08
NUP88-203ENST00000572019 CASC2Q6XLA1 102 aa8.3□□□□□ -1.08
NUP88-203ENST00000572019 SPRR2EP22531 72 aa8.29□□□□□ -1.08
NUP88-203ENST00000572019 SPRR2BP35325 72 aa8.29□□□□□ -1.08
NUP88-203ENST00000572019 SPRR2AP35326 72 aa8.29□□□□□ -1.08
NUP88-203ENST00000572019 COL5A1-AS1Q5SY13 56 aa8.29□□□□□ -1.08
NUP88-203ENST00000572019 SPRR2FQ96RM1 72 aa8.29□□□□□ -1.08
NUP88-203ENST00000572019 BPY2O14599 106 aa8.28□□□□□ -1.08
NUP88-203ENST00000572019 C1orf64Q8NEQ6 169 aa8.28□□□□□ -1.08
NUP88-203ENST00000572019 IMUPQ9GZP8 106 aa8.28□□□□□ -1.08
NUP88-203ENST00000572019 KRTAP3-3Q9BYR6 98 aa8.27□□□□□ -1.09
NUP88-203ENST00000572019 PCP4L1A6NKN8 68 aa8.25□□□□□ -1.09
NUP88-203ENST00000572019 CXCL6P80162 114 aa8.22□□□□□ -1.09
NUP88-203ENST00000572019 H3BT86 120 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms