RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-209	ENST00000569243	SPEN	Q96T58	3664 aa	Known RBP	0.26	□□□□□ -2.37
UBR1-209	ENST00000569243	DNAH9	Q9NYC9	4486 aa		0.26	□□□□□ -2.37
UBR1-209	ENST00000569243	MYCBP2	O75592	4640 aa		0.26	□□□□□ -2.37
UBR1-209	ENST00000569243	NBPF19	A0A087WUL8	3843 aa		0.26	□□□□□ -2.37
UBR1-209	ENST00000569243	DNAH7	Q8WXX0	4024 aa		0.26	□□□□□ -2.37
UBR1-209	ENST00000569243	SYNE1	Q8NF91	8797 aa	Known RBP	0.25	□□□□□ -2.37
UBR1-209	ENST00000569243	PKHD1L1	Q86WI1	4243 aa		0.25	□□□□□ -2.37
UBR1-209	ENST00000569243	PKD1L1	Q8TDX9	2849 aa		0.25	□□□□□ -2.37
UBR1-209	ENST00000569243	FAT4	Q6V0I7	4981 aa		0.25	□□□□□ -2.37
UBR1-209	ENST00000569243	KIF21B	O75037	1637 aa		0.25	□□□□□ -2.37
UBR1-209	ENST00000569243	SETX	Q7Z333	2677 aa	Known RBP	0.25	□□□□□ -2.37
UBR1-209	ENST00000569243	CACNA1A	O00555	2505 aa		0.25	□□□□□ -2.37
UBR1-209	ENST00000569243	NCOR2	Q9Y618	2525 aa		0.25	□□□□□ -2.37
UBR1-209	ENST00000569243	ACAN	P16112	2415 aa		0.25	□□□□□ -2.37
UBR1-209	ENST00000569243	PKD1	P98161	4303 aa		0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	KMT2D	O14686	5537 aa		0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	FLG	P20930	4061 aa	Predicted RBP	0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	SRRM2	Q9UQ35	2752 aa	Known RBP	0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	GCN1	Q92616	2671 aa	Known RBP	0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	NSD1	Q96L73	2696 aa	Predicted RBP	0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	LRRK2	Q5S007	2527 aa		0.24	□□□□□ -2.37
UBR1-209	ENST00000569243		H3BNG1	76 aa		0.24	□□□□□ -2.37
UBR1-209	ENST00000569243		H3BUA1	57 aa		0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	NDUFA1	O15239	70 aa		0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	APOB	P04114	4563 aa	Known RBP	0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	HSPG2	P98160	4391 aa		0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	DNAH6	Q9C0G6	4158 aa		0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	SPG11	Q96JI7	2443 aa		0.24	□□□□□ -2.37
UBR1-209	ENST00000569243	PKHD1	P08F94	4074 aa		0.23	□□□□□ -2.37
UBR1-209	ENST00000569243	TRPM2	O94759	1503 aa		0.23	□□□□□ -2.37
UBR1-209	ENST00000569243	CCDC168	Q8NDH2	2452 aa		0.23	□□□□□ -2.37
UBR1-209	ENST00000569243	ANK3	Q12955	4377 aa	Known RBP	0.23	□□□□□ -2.37
UBR1-209	ENST00000569243	IGLV5-48	A0A075B6I7	105 aa		0.23	□□□□□ -2.37
UBR1-209	ENST00000569243	MMP24-AS1	A0A0U1RRL7	71 aa		0.23	□□□□□ -2.37
UBR1-209	ENST00000569243	IGSF10	Q6WRI0	2623 aa		0.23	□□□□□ -2.37
UBR1-209	ENST00000569243	DMBT1	Q9UGM3	2413 aa	Predicted RBP	0.23	□□□□□ -2.37
UBR1-209	ENST00000569243	ATP7A	Q04656	1500 aa		0.23	□□□□□ -2.37
UBR1-209	ENST00000569243	LRP1B	Q9NZR2	4599 aa		0.23	□□□□□ -2.37
UBR1-209	ENST00000569243	FASN	P49327	2511 aa	Known RBP	0.22	□□□□□ -2.37
UBR1-209	ENST00000569243	NF1	P21359	2839 aa		0.22	□□□□□ -2.37
UBR1-209	ENST00000569243	HMCN2	Q8NDA2	5059 aa		0.22	□□□□□ -2.37
UBR1-209	ENST00000569243	FLNC	Q14315	2725 aa		0.22	□□□□□ -2.37
UBR1-209	ENST00000569243	ACACA	Q13085	2346 aa		0.22	□□□□□ -2.37
UBR1-209	ENST00000569243	ZZEF1	O43149	2961 aa		0.22	□□□□□ -2.37
UBR1-209	ENST00000569243	SPTBN4	Q9H254	2564 aa		0.22	□□□□□ -2.37
UBR1-209	ENST00000569243	RIF1	Q5UIP0	2472 aa	Known RBP	0.22	□□□□□ -2.37
UBR1-209	ENST00000569243	DNAH2	Q9P225	4427 aa		0.22	□□□□□ -2.37
UBR1-209	ENST00000569243	UTP20	O75691	2785 aa	Known RBP	0.22	□□□□□ -2.37
UBR1-209	ENST00000569243	MTOR	P42345	2549 aa		0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	DEFB110	Q30KQ9	67 aa		0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	DEFB104A	Q8WTQ1	72 aa		0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	LEAP2	Q969E1	77 aa		0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	DCHS2	Q6V1P9	2916 aa		0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	FAT1	Q14517	4588 aa		0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	FLNB	O75369	2602 aa	Known RBP	0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	HRNR	Q86YZ3	2850 aa	Predicted RBP	0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	SETD2	Q9BYW2	2564 aa	Predicted RBP	0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	PDZD2	O15018	2839 aa		0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	ANKHD1	Q8IWZ3	2542 aa	Known RBP	0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	VPS13D	Q5THJ4	4388 aa		0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	DMXL1	Q9Y485	3027 aa		0.21	□□□□□ -2.38
UBR1-209	ENST00000569243	MAST4	O15021	2626 aa		0.2	□□□□□ -2.38
UBR1-209	ENST00000569243		M0QY20	66 aa		0.2	□□□□□ -2.38
UBR1-209	ENST00000569243	POLR2K	P53803	58 aa	Known RBP	0.2	□□□□□ -2.38
UBR1-209	ENST00000569243	RPL39	P62891	51 aa	Known RBP	0.2	□□□□□ -2.38
UBR1-209	ENST00000569243	NOP10	Q9NPE3	64 aa	Known RBP	0.2	□□□□□ -2.38
UBR1-209	ENST00000569243	DYNC2H1	Q8NCM8	4307 aa	Known RBP	0.2	□□□□□ -2.38
UBR1-209	ENST00000569243	DNAH1	Q9P2D7	4330 aa		0.2	□□□□□ -2.38
UBR1-209	ENST00000569243	CLTCL1	P53675	1640 aa		0.2	□□□□□ -2.38
UBR1-209	ENST00000569243	FAT3	Q8TDW7	4589 aa		0.2	□□□□□ -2.38
UBR1-209	ENST00000569243	SAMD9L	Q8IVG5	1584 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	STAB1	Q9NY15	2570 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	SVEP1	Q4LDE5	3571 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	COL7A1	Q02388	2944 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	DNAH8	Q96JB1	4490 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243		A8MTW9	85 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	SPRR2D	P22532	72 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	DEFB131A	P59861	70 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	RPL39L	Q96EH5	51 aa	Known RBP	0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	TOMM7	Q9P0U1	55 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	SYNE2	Q8WXH0	6885 aa	Known RBP	0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	NBEAL2	Q6ZNJ1	2754 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243		A0A0C4DFX4	3053 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	RANBP2	P49792	3224 aa	Known RBP	0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	LRP2	P98164	4655 aa		0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	PLEC	Q15149	4684 aa	Known RBP	0.19	□□□□□ -2.38
UBR1-209	ENST00000569243	FLNA	P21333	2647 aa	Known RBP	0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	TEP1	Q99973	2627 aa	Known RBP	0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	SON	P18583	2426 aa	Known RBP	0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	TENM2	Q9NT68	2774 aa		0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	EPG5	Q9HCE0	2579 aa		0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	MACF1	Q9UPN3	7388 aa	Known RBP	0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	COL6A5	A8TX70	2615 aa		0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	ZFHX4	Q86UP3	3567 aa		0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	COL12A1	Q99715	3063 aa		0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	MYO18B	Q8IUG5	2567 aa		0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	FAM186A	A6NE01	2351 aa		0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	LAMA5	O15230	3695 aa		0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	KALRN	O60229	2985 aa		0.18	□□□□□ -2.38
UBR1-209	ENST00000569243	COL6A3	P12111	3177 aa		0.17	□□□□□ -2.38

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