RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 NDUFB1O75438 58 aa11.8□□□□□ -0.52
CLN3-234ENST00000568472 A0A1B0GVX0 72 aa11.79□□□□□ -0.52
CLN3-234ENST00000568472 DSCR10P59022 87 aa11.79□□□□□ -0.52
CLN3-234ENST00000568472 PCOTHQ58A44 107 aa11.79□□□□□ -0.52
CLN3-234ENST00000568472 IGHV6-1A0A0B4J1U7 121 aa11.78□□□□□ -0.52
CLN3-234ENST00000568472 A0A0U1RQV1 116 aa11.78□□□□□ -0.52
CLN3-234ENST00000568472 C8orf87E5RJ46 101 aa11.78□□□□□ -0.52
CLN3-234ENST00000568472 C20orf166-AS1Q96NR2 134 aa11.77□□□□□ -0.53
CLN3-234ENST00000568472 A8MWP4 228 aa11.74□□□□□ -0.53
CLN3-234ENST00000568472 ATP11AUNQ6ZP68 121 aa11.74□□□□□ -0.53
CLN3-234ENST00000568472 A8MUU9 505 aa11.73□□□□□ -0.53
CLN3-234ENST00000568472 ETDBQ3ZM63 59 aa11.72□□□□□ -0.53
CLN3-234ENST00000568472 NOTCH2NLQ7Z3S9 236 aa11.69□□□□□ -0.54
CLN3-234ENST00000568472 KRTAP16-1A8MUX0 517 aa11.68□□□□□ -0.54
CLN3-234ENST00000568472 Q6ZVQ6 151 aa11.67□□□□□ -0.54
CLN3-234ENST00000568472 KRTAP4-1Q9BYQ7 146 aa11.67□□□□□ -0.54
CLN3-234ENST00000568472 IGKV3D-7A0A0C4DH55 119 aa11.66□□□□□ -0.54
CLN3-234ENST00000568472 BPY2O14599 106 aa11.66□□□□□ -0.54
CLN3-234ENST00000568472 PRR15Q8IV56 129 aa11.66□□□□□ -0.54
CLN3-234ENST00000568472 UBL5Q9BZL1 73 aa11.66□□□□□ -0.54
CLN3-234ENST00000568472 LINC00846Q9NV44 126 aa11.63□□□□□ -0.55
CLN3-234ENST00000568472 C8orf17Q9NRJ1 99 aa11.62□□□□□ -0.55
CLN3-234ENST00000568472 A0A1B0GV90 55 aa11.59□□□□□ -0.55
CLN3-234ENST00000568472 K7EQZ3 153 aa11.54□□□□□ -0.56
CLN3-234ENST00000568472 Q8N9P0 234 aaPredicted RBP11.54□□□□□ -0.56
CLN3-234ENST00000568472 ACYP1P07311 99 aa11.53□□□□□ -0.56
CLN3-234ENST00000568472 MMP24-AS1A0A0U1RRL7 71 aa11.5□□□□□ -0.57
CLN3-234ENST00000568472 TMEM254Q8TBM7 123 aa11.49□□□□□ -0.57
CLN3-234ENST00000568472 FAM240AA0A1B0GVK7 77 aa11.48□□□□□ -0.57
CLN3-234ENST00000568472 hDV103S1A0JD37 113 aa11.47□□□□□ -0.57
CLN3-234ENST00000568472 FAT4Q6V0I7 4981 aa11.46□□□□□ -0.57
CLN3-234ENST00000568472 MRPL34Q9BQ48 92 aaKnown RBP11.46□□□□□ -0.57
CLN3-234ENST00000568472 CXCL6P80162 114 aa11.45□□□□□ -0.58
CLN3-234ENST00000568472 Q8N9L7 120 aa11.43□□□□□ -0.58
CLN3-234ENST00000568472 ZCCHC13Q8WW36 166 aaKnown RBP11.43□□□□□ -0.58
CLN3-234ENST00000568472 CASC2Q6XLA1 102 aa11.39□□□□□ -0.59
CLN3-234ENST00000568472 KRTAP19-2Q3LHN2 52 aa11.36□□□□□ -0.59
CLN3-234ENST00000568472 LCE2AQ5TA79 106 aaPredicted RBP11.35□□□□□ -0.59
CLN3-234ENST00000568472 NDUFS5O43920 106 aa11.34□□□□□ -0.59
CLN3-234ENST00000568472 WFDC13Q8IUB5 93 aa11.34□□□□□ -0.59
CLN3-234ENST00000568472 HCG22E2RYF7 251 aa11.33□□□□□ -0.6
CLN3-234ENST00000568472 LCE2CQ5TA81 110 aa11.32□□□□□ -0.6
CLN3-234ENST00000568472 ATP5EP2Q5VTU8 51 aa11.32□□□□□ -0.6
CLN3-234ENST00000568472 COX6B2Q6YFQ2 88 aa11.31□□□□□ -0.6
CLN3-234ENST00000568472 J3QR89 54 aa11.3□□□□□ -0.6
CLN3-234ENST00000568472 SPINK7P58062 85 aa11.25□□□□□ -0.61
CLN3-234ENST00000568472 LINC00643Q86TS7 51 aa11.24□□□□□ -0.61
CLN3-234ENST00000568472 RBM12B-AS1Q9P1G2 102 aa11.21□□□□□ -0.61
CLN3-234ENST00000568472 HRES1P13985 223 aa11.19□□□□□ -0.62
CLN3-234ENST00000568472 MT1HP80294 61 aa11.17□□□□□ -0.62
CLN3-234ENST00000568472 MPLKIPQ8TAP9 179 aa11.17□□□□□ -0.62
CLN3-234ENST00000568472 TP53AIP1Q9HCN2 124 aa11.17□□□□□ -0.62
CLN3-234ENST00000568472 HIST1H4AP62805 103 aaKnown RBP11.14□□□□□ -0.63
CLN3-234ENST00000568472 Q5W150 140 aa11.14□□□□□ -0.63
CLN3-234ENST00000568472 FAM236DA0A1B0GTK5 79 aa11.11□□□□□ -0.63
CLN3-234ENST00000568472 FAM236CP0DP71 79 aa11.11□□□□□ -0.63
CLN3-234ENST00000568472 C7orf65Q6ZTY9 151 aa11.08□□□□□ -0.64
CLN3-234ENST00000568472 IGKV2D-30A0A075B6S6 120 aa11.05□□□□□ -0.64
CLN3-234ENST00000568472 M0R2T5 61 aa11.05□□□□□ -0.64
CLN3-234ENST00000568472 IGKV2-30P06310 120 aa11.05□□□□□ -0.64
CLN3-234ENST00000568472 K7ERU9 68 aa11.04□□□□□ -0.64
CLN3-234ENST00000568472 FLGP20930 4061 aaPredicted RBP11.03□□□□□ -0.64
CLN3-234ENST00000568472 A0A087WVE0 104 aa10.96□□□□□ -0.65
CLN3-234ENST00000568472 UQCRQO14949 82 aa10.93□□□□□ -0.66
CLN3-234ENST00000568472 TRAV22A0A0B4J277 110 aa10.91□□□□□ -0.66
CLN3-234ENST00000568472 KRTAP10-6P60371 365 aaPredicted RBP10.9□□□□□ -0.66
CLN3-234ENST00000568472 LORP23490 312 aaPredicted RBP10.87□□□□□ -0.67
CLN3-234ENST00000568472 IMUPQ9GZP8 106 aa10.87□□□□□ -0.67
CLN3-234ENST00000568472 ATOX1O00244 68 aa10.85□□□□□ -0.67
CLN3-234ENST00000568472 LOC101927531A0A1B0GV80 90 aa10.84□□□□□ -0.67
CLN3-234ENST00000568472 H1FX-AS1Q4G0G2 97 aa10.83□□□□□ -0.68
CLN3-234ENST00000568472 C4orf26Q17RF5 130 aa10.81□□□□□ -0.68
CLN3-234ENST00000568472 CYP4F30PQ9H0H9 118 aa10.81□□□□□ -0.68
CLN3-234ENST00000568472 H0Y9P7 68 aa10.79□□□□□ -0.68
CLN3-234ENST00000568472 OCR1Q9BZK8 76 aa10.78□□□□□ -0.68
CLN3-234ENST00000568472 SCGB1A1P11684 91 aa10.77□□□□□ -0.69
CLN3-234ENST00000568472 MT-ATP8P03928 68 aa10.75□□□□□ -0.69
CLN3-234ENST00000568472 MP68P56378 58 aa10.72□□□□□ -0.69
CLN3-234ENST00000568472 C5orf47Q569G3 176 aa10.72□□□□□ -0.69
CLN3-234ENST00000568472 C1orf64Q8NEQ6 169 aa10.7□□□□□ -0.7
CLN3-234ENST00000568472 LCE2DQ5TA82 110 aaPredicted RBP10.67□□□□□ -0.7
CLN3-234ENST00000568472 LINC00208Q96KT6 92 aa10.66□□□□□ -0.7
CLN3-234ENST00000568472 KRTAP9-2Q9BYQ4 174 aa10.66□□□□□ -0.7
CLN3-234ENST00000568472 H3BPC8 53 aa10.65□□□□□ -0.7
CLN3-234ENST00000568472 KRTAP9-8Q9BYQ0 159 aa10.64□□□□□ -0.71
CLN3-234ENST00000568472 KRTAP3-1Q9BYR8 98 aa10.64□□□□□ -0.71
CLN3-234ENST00000568472 SMIM20Q8N5G0 67 aa10.63□□□□□ -0.71
CLN3-234ENST00000568472 FAM236AA0A1B0GUQ0 79 aa10.58□□□□□ -0.72
CLN3-234ENST00000568472 FAM236BA0A1B0GV22 79 aa10.58□□□□□ -0.72
CLN3-234ENST00000568472 TRAV7A0A075B6U4 112 aa10.53□□□□□ -0.72
CLN3-234ENST00000568472 S4R3F8 94 aa10.53□□□□□ -0.72
CLN3-234ENST00000568472 MT2AP02795 61 aa10.52□□□□□ -0.73
CLN3-234ENST00000568472 A8MUN3 132 aa10.49□□□□□ -0.73
CLN3-234ENST00000568472 KLKP1Q107X0 134 aa10.49□□□□□ -0.73
CLN3-234ENST00000568472 KRTAP10-10P60014 251 aa10.45□□□□□ -0.74
CLN3-234ENST00000568472 CSAG1Q6PB30 78 aa10.45□□□□□ -0.74
CLN3-234ENST00000568472 LCA10Q71F78 164 aa10.44□□□□□ -0.74
CLN3-234ENST00000568472 MT1FP04733 61 aa10.42□□□□□ -0.74
CLN3-234ENST00000568472 SERP2Q8N6R1 65 aa10.33□□□□□ -0.76
CLN3-234ENST00000568472 KRTAP3-3Q9BYR6 98 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms