RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 CCKP06307 115 aa8.4□□□□□ -1.06
CLN3-231ENST00000568422 COX6CP09669 75 aa8.4□□□□□ -1.06
CLN3-231ENST00000568422 HRES1P13985 223 aa8.4□□□□□ -1.06
CLN3-231ENST00000568422 COL5A1-AS1Q5SY13 56 aa8.4□□□□□ -1.06
CLN3-231ENST00000568422 C9orf118A6NHY6 69 aa8.39□□□□□ -1.07
CLN3-231ENST00000568422 TRACP01848 142 aa8.39□□□□□ -1.07
CLN3-231ENST00000568422 IGHV6-1A0A0B4J1U7 121 aa8.38□□□□□ -1.07
CLN3-231ENST00000568422 A0A1B0GV72 72 aa8.38□□□□□ -1.07
CLN3-231ENST00000568422 DEFB116Q30KQ4 102 aa8.38□□□□□ -1.07
CLN3-231ENST00000568422 UBE2V1Q13404 147 aa8.37□□□□□ -1.07
CLN3-231ENST00000568422 A0A1W2PPM0 123 aa8.35□□□□□ -1.07
CLN3-231ENST00000568422 C8orf87E5RJ46 101 aa8.35□□□□□ -1.07
CLN3-231ENST00000568422 MTURNQ8N3F0 131 aa8.35□□□□□ -1.07
CLN3-231ENST00000568422 MT1FP04733 61 aa8.34□□□□□ -1.07
CLN3-231ENST00000568422 SCGB1C2P0DMR2 95 aa8.34□□□□□ -1.07
CLN3-231ENST00000568422 A0A1B0GVX0 72 aa8.33□□□□□ -1.08
CLN3-231ENST00000568422 KRTAP10-10P60014 251 aa8.33□□□□□ -1.08
CLN3-231ENST00000568422 FCGBPQ9Y6R7 5405 aaPredicted RBP8.32□□□□□ -1.08
CLN3-231ENST00000568422 LCE2BO14633 110 aa8.31□□□□□ -1.08
CLN3-231ENST00000568422 KRTAP9-3Q9BYQ3 159 aa8.31□□□□□ -1.08
CLN3-231ENST00000568422 C21orf62-AS1Q17RA5 79 aa8.3□□□□□ -1.08
CLN3-231ENST00000568422 LYRM7Q5U5X0 104 aa8.3□□□□□ -1.08
CLN3-231ENST00000568422 RBM3P98179 157 aaKnown RBP8.29□□□□□ -1.08
CLN3-231ENST00000568422 ATXN8Q156A1 80 aa8.29□□□□□ -1.08
CLN3-231ENST00000568422 VPS25Q9BRG1 176 aa8.29□□□□□ -1.08
CLN3-231ENST00000568422 J3KT08 172 aa8.28□□□□□ -1.08
CLN3-231ENST00000568422 ZCCHC13Q8WW36 166 aaKnown RBP8.28□□□□□ -1.08
CLN3-231ENST00000568422 DSCR8Q96T75 97 aa8.28□□□□□ -1.08
CLN3-231ENST00000568422 KRTAP19-1Q8IUB9 90 aa8.27□□□□□ -1.09
CLN3-231ENST00000568422 SPCS1Q9Y6A9 102 aa8.25□□□□□ -1.09
CLN3-231ENST00000568422 SPINK7P58062 85 aa8.24□□□□□ -1.09
CLN3-231ENST00000568422 K7EP34 96 aa8.23□□□□□ -1.09
CLN3-231ENST00000568422 C9JAW5 83 aa8.22□□□□□ -1.09
CLN3-231ENST00000568422 NDUFB1O75438 58 aa8.22□□□□□ -1.09
CLN3-231ENST00000568422 Q6ZQT0 140 aa8.2□□□□□ -1.1
CLN3-231ENST00000568422 Q8N9P0 234 aaPredicted RBP8.2□□□□□ -1.1
CLN3-231ENST00000568422 BAALC-AS2P0C853 105 aa8.19□□□□□ -1.1
CLN3-231ENST00000568422 LINC00846Q9NV44 126 aa8.19□□□□□ -1.1
CLN3-231ENST00000568422 PRO0461Q9UI25 63 aa8.17□□□□□ -1.1
CLN3-231ENST00000568422 A0A1B0GW54 56 aa8.16□□□□□ -1.1
CLN3-231ENST00000568422 SMCPP49901 116 aaPredicted RBP8.16□□□□□ -1.1
CLN3-231ENST00000568422 A8MWP4 228 aa8.15□□□□□ -1.1
CLN3-231ENST00000568422 H3BT86 120 aa8.15□□□□□ -1.1
CLN3-231ENST00000568422 A0A1B0GV90 55 aa8.14□□□□□ -1.11
CLN3-231ENST00000568422 GTF2H5Q6ZYL4 71 aa8.13□□□□□ -1.11
CLN3-231ENST00000568422 C8orf17Q9NRJ1 99 aa8.13□□□□□ -1.11
CLN3-231ENST00000568422 JMJD7-PLA2G4BH0Y9G9 81 aa8.12□□□□□ -1.11
CLN3-231ENST00000568422 WFDC13Q8IUB5 93 aa8.12□□□□□ -1.11
CLN3-231ENST00000568422 MACF1Q9UPN3 7388 aaKnown RBP8.11□□□□□ -1.11
CLN3-231ENST00000568422 KRTAP19-6Q3LI70 58 aa8.1□□□□□ -1.11
CLN3-231ENST00000568422 LOC110117498A0A087WWA1 95 aa8.09□□□□□ -1.11
CLN3-231ENST00000568422 PDE6GP18545 87 aa8.09□□□□□ -1.11
CLN3-231ENST00000568422 IGKV3D-7A0A0C4DH55 119 aa8.08□□□□□ -1.12
CLN3-231ENST00000568422 Q6ZVQ6 151 aa8.08□□□□□ -1.12
CLN3-231ENST00000568422 SYNE2Q8WXH0 6885 aaKnown RBP8.06□□□□□ -1.12
CLN3-231ENST00000568422 F8W1H4 67 aa8.04□□□□□ -1.12
CLN3-231ENST00000568422 PRR15Q8IV56 129 aa8.03□□□□□ -1.12
CLN3-231ENST00000568422 C14orf132Q9NPU4 83 aa8.03□□□□□ -1.12
CLN3-231ENST00000568422 NREPQ16612 68 aa8□□□□□ -1.13
CLN3-231ENST00000568422 H1FX-AS1Q4G0G2 97 aa7.99□□□□□ -1.13
CLN3-231ENST00000568422 TMEM254Q8TBM7 123 aa7.99□□□□□ -1.13
CLN3-231ENST00000568422 MRPL34Q9BQ48 92 aaKnown RBP7.99□□□□□ -1.13
CLN3-231ENST00000568422 ETDBQ3ZM63 59 aa7.97□□□□□ -1.13
CLN3-231ENST00000568422 MMP24-AS1A0A0U1RRL7 71 aa7.96□□□□□ -1.14
CLN3-231ENST00000568422 hDV103S1A0JD37 113 aa7.94□□□□□ -1.14
CLN3-231ENST00000568422 NDUFS5O43920 106 aa7.91□□□□□ -1.14
CLN3-231ENST00000568422 K7EQZ3 153 aa7.88□□□□□ -1.15
CLN3-231ENST00000568422 C7orf65Q6ZTY9 151 aa7.87□□□□□ -1.15
CLN3-231ENST00000568422 IGKV2D-30A0A075B6S6 120 aa7.85□□□□□ -1.15
CLN3-231ENST00000568422 IGKV2-30P06310 120 aa7.85□□□□□ -1.15
CLN3-231ENST00000568422 KRTAP6-3Q3LI67 103 aa7.85□□□□□ -1.15
CLN3-231ENST00000568422 BPY2O14599 106 aa7.83□□□□□ -1.16
CLN3-231ENST00000568422 Q5W150 140 aa7.83□□□□□ -1.16
CLN3-231ENST00000568422 FAM240AA0A1B0GVK7 77 aa7.76□□□□□ -1.17
CLN3-231ENST00000568422 CASC2Q6XLA1 102 aa7.76□□□□□ -1.17
CLN3-231ENST00000568422 C4orf26Q17RF5 130 aa7.75□□□□□ -1.17
CLN3-231ENST00000568422 HCG22E2RYF7 251 aa7.74□□□□□ -1.17
CLN3-231ENST00000568422 CXCL6P80162 114 aa7.74□□□□□ -1.17
CLN3-231ENST00000568422 ACYP1P07311 99 aa7.73□□□□□ -1.17
CLN3-231ENST00000568422 UBL5Q9BZL1 73 aa7.71□□□□□ -1.18
CLN3-231ENST00000568422 Q8N9L7 120 aa7.7□□□□□ -1.18
CLN3-231ENST00000568422 FAM236AA0A1B0GUQ0 79 aa7.68□□□□□ -1.18
CLN3-231ENST00000568422 FAM236BA0A1B0GV22 79 aa7.68□□□□□ -1.18
CLN3-231ENST00000568422 C5orf47Q569G3 176 aa7.68□□□□□ -1.18
CLN3-231ENST00000568422 J3QR89 54 aa7.65□□□□□ -1.18
CLN3-231ENST00000568422 A6NN06 94 aa7.64□□□□□ -1.19
CLN3-231ENST00000568422 CSAG1Q6PB30 78 aa7.64□□□□□ -1.19
CLN3-231ENST00000568422 S4R3F8 94 aa7.64□□□□□ -1.19
CLN3-231ENST00000568422 Q5VV11 94 aa7.62□□□□□ -1.19
CLN3-231ENST00000568422 KRTAP3-1Q9BYR8 98 aa7.62□□□□□ -1.19
CLN3-231ENST00000568422 SPRR2GQ9BYE4 73 aa7.61□□□□□ -1.19
CLN3-231ENST00000568422 MT1BP07438 61 aa7.6□□□□□ -1.19
CLN3-231ENST00000568422 K7ERU9 68 aa7.59□□□□□ -1.19
CLN3-231ENST00000568422 C1orf64Q8NEQ6 169 aa7.59□□□□□ -1.19
CLN3-231ENST00000568422 KRTAP19-8Q3LI54 63 aa7.58□□□□□ -1.2
CLN3-231ENST00000568422 LINC00643Q86TS7 51 aa7.58□□□□□ -1.2
CLN3-231ENST00000568422 ATP5EP2Q5VTU8 51 aa7.57□□□□□ -1.2
CLN3-231ENST00000568422 LCA10Q71F78 164 aa7.57□□□□□ -1.2
CLN3-231ENST00000568422 NEBP20929 6669 aa7.57□□□□□ -1.2
CLN3-231ENST00000568422 MUC12Q9UKN1 5478 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms