RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 KRTAP1-4P0C5Y4 121 aa11.81□□□□□ -0.52
CLN3-230ENST00000568076 PKHD1P08F94 4074 aa11.81□□□□□ -0.52
CLN3-230ENST00000568076 Q5XG85 94 aa11.8□□□□□ -0.52
CLN3-230ENST00000568076 FAM229BQ4G0N7 80 aa11.79□□□□□ -0.52
CLN3-230ENST00000568076 H3BPC8 53 aa11.78□□□□□ -0.52
CLN3-230ENST00000568076 C1orf64Q8NEQ6 169 aa11.75□□□□□ -0.53
CLN3-230ENST00000568076 MRPL34Q9BQ48 92 aaKnown RBP11.75□□□□□ -0.53
CLN3-230ENST00000568076 TP53AIP1Q9HCN2 124 aa11.74□□□□□ -0.53
CLN3-230ENST00000568076 DYNC1H1Q14204 4646 aaKnown RBP11.72□□□□□ -0.53
CLN3-230ENST00000568076 PRR4Q16378 134 aa11.71□□□□□ -0.53
CLN3-230ENST00000568076 FP248Q71RG6 208 aaPredicted RBP11.71□□□□□ -0.53
CLN3-230ENST00000568076 SMIM26A0A096LP01 95 aa11.7□□□□□ -0.54
CLN3-230ENST00000568076 NDUFS5O43920 106 aa11.7□□□□□ -0.54
CLN3-230ENST00000568076 C4orf26Q17RF5 130 aa11.7□□□□□ -0.54
CLN3-230ENST00000568076 LINC00336Q6ZUF6 198 aa11.7□□□□□ -0.54
CLN3-230ENST00000568076 CYP4F30PQ9H0H9 118 aa11.69□□□□□ -0.54
CLN3-230ENST00000568076 A0A1B0GVY2 172 aa11.67□□□□□ -0.54
CLN3-230ENST00000568076 C1orf195Q5TG92 126 aa11.67□□□□□ -0.54
CLN3-230ENST00000568076 PLA2G1BP04054 148 aaKnown RBP11.66□□□□□ -0.54
CLN3-230ENST00000568076 RYR2Q92736 4967 aa11.63□□□□□ -0.55
CLN3-230ENST00000568076 SPANXA2-OT1Q8N9U9 137 aa11.62□□□□□ -0.55
CLN3-230ENST00000568076 C8orf87E5RJ46 101 aa11.61□□□□□ -0.55
CLN3-230ENST00000568076 SMR3BP02814 79 aaPredicted RBP11.6□□□□□ -0.55
CLN3-230ENST00000568076 TYMSOSQ8TAI1 123 aa11.59□□□□□ -0.55
CLN3-230ENST00000568076 APOBP04114 4563 aaKnown RBP11.57□□□□□ -0.56
CLN3-230ENST00000568076 Q5W150 140 aa11.57□□□□□ -0.56
CLN3-230ENST00000568076 PCOTHQ58A44 107 aa11.56□□□□□ -0.56
CLN3-230ENST00000568076 LIMD2Q9BT23 127 aa11.56□□□□□ -0.56
CLN3-230ENST00000568076 LINC00313P59037 77 aa11.56□□□□□ -0.56
CLN3-230ENST00000568076 KRTAP13-3Q3SY46 172 aa11.55□□□□□ -0.56
CLN3-230ENST00000568076 KMT2CQ8NEZ4 4911 aaKnown RBP11.54□□□□□ -0.56
CLN3-230ENST00000568076 PRR26Q8N8Z3 221 aa11.53□□□□□ -0.56
CLN3-230ENST00000568076 FAT1Q14517 4588 aa11.53□□□□□ -0.56
CLN3-230ENST00000568076 IGLV7-46A0A075B6I9 117 aa11.52□□□□□ -0.57
CLN3-230ENST00000568076 C4orf48Q5BLP8 95 aa11.52□□□□□ -0.57
CLN3-230ENST00000568076 MPLKIPQ8TAP9 179 aa11.52□□□□□ -0.57
CLN3-230ENST00000568076 KRTAP10-4P60372 401 aaPredicted RBP11.5□□□□□ -0.57
CLN3-230ENST00000568076 SPINK1P00995 79 aa11.5□□□□□ -0.57
CLN3-230ENST00000568076 Q8N9P0 234 aaPredicted RBP11.48□□□□□ -0.57
CLN3-230ENST00000568076 KRTAP16-1A8MUX0 517 aa11.48□□□□□ -0.57
CLN3-230ENST00000568076 LOC101927531A0A1B0GV80 90 aa11.45□□□□□ -0.58
CLN3-230ENST00000568076 LINC00304Q8N9R0 145 aa11.44□□□□□ -0.58
CLN3-230ENST00000568076 FAM229AH3BQW9 127 aa11.38□□□□□ -0.59
CLN3-230ENST00000568076 RPS29P62273 56 aaKnown RBP11.38□□□□□ -0.59
CLN3-230ENST00000568076 RETNLBQ9BQ08 111 aa11.38□□□□□ -0.59
CLN3-230ENST00000568076 Q1T7F1 81 aa11.37□□□□□ -0.59
CLN3-230ENST00000568076 SPAG11AQ6PDA7 123 aa11.36□□□□□ -0.59
CLN3-230ENST00000568076 COA5Q86WW8 74 aa11.36□□□□□ -0.59
CLN3-230ENST00000568076 PKHD1L1Q86WI1 4243 aa11.34□□□□□ -0.59
CLN3-230ENST00000568076 IGKV2-30P06310 120 aa11.28□□□□□ -0.6
CLN3-230ENST00000568076 HRES1P13985 223 aa11.27□□□□□ -0.61
CLN3-230ENST00000568076 RYR3Q15413 4870 aa11.23□□□□□ -0.61
CLN3-230ENST00000568076 PSPHP1O15172 72 aa11.23□□□□□ -0.61
CLN3-230ENST00000568076 V9GYY9 64 aa11.2□□□□□ -0.62
CLN3-230ENST00000568076 A8MUN3 132 aa11.17□□□□□ -0.62
CLN3-230ENST00000568076 IGKV2D-30A0A075B6S6 120 aa11.16□□□□□ -0.62
CLN3-230ENST00000568076 HSPG2P98160 4391 aa11.15□□□□□ -0.62
CLN3-230ENST00000568076 DMAC1Q96GE9 116 aa11.14□□□□□ -0.63
CLN3-230ENST00000568076 C9orf92A6NGG3 77 aa11.12□□□□□ -0.63
CLN3-230ENST00000568076 BRK1Q8WUW1 75 aa11.12□□□□□ -0.63
CLN3-230ENST00000568076 ACYP2P14621 99 aa11.11□□□□□ -0.63
CLN3-230ENST00000568076 Q5VV11 94 aa11.11□□□□□ -0.63
CLN3-230ENST00000568076 LRP1Q07954 4544 aaKnown RBP11.1□□□□□ -0.63
CLN3-230ENST00000568076 PRO0628Q9UI54 55 aa11.09□□□□□ -0.63
CLN3-230ENST00000568076 Q5VSD8 79 aa11.08□□□□□ -0.64
CLN3-230ENST00000568076 RYR1P21817 5038 aa11.07□□□□□ -0.64
CLN3-230ENST00000568076 PRR15LQ9BU68 103 aa11.07□□□□□ -0.64
CLN3-230ENST00000568076 Q8N1X5 172 aa11.06□□□□□ -0.64
CLN3-230ENST00000568076 C20orf166-AS1Q96NR2 134 aa11.06□□□□□ -0.64
CLN3-230ENST00000568076 FLG2Q5D862 2391 aaPredicted RBP11.05□□□□□ -0.64
CLN3-230ENST00000568076 TNXBP22105 4242 aa11.05□□□□□ -0.64
CLN3-230ENST00000568076 A8MUU9 505 aa11.05□□□□□ -0.64
CLN3-230ENST00000568076 KRTAP17-1Q9BYP8 105 aa11.03□□□□□ -0.64
CLN3-230ENST00000568076 LINC01558Q9Y6Z2 57 aa11.03□□□□□ -0.64
CLN3-230ENST00000568076 KRTAP10-8P60410 259 aa11.03□□□□□ -0.64
CLN3-230ENST00000568076 FAT3Q8TDW7 4589 aa11.01□□□□□ -0.65
CLN3-230ENST00000568076 C7orf65Q6ZTY9 151 aa11□□□□□ -0.65
CLN3-230ENST00000568076 Q75L30 129 aa10.96□□□□□ -0.65
CLN3-230ENST00000568076 CHKB-CPT1BH3BT56 60 aa10.96□□□□□ -0.66
CLN3-230ENST00000568076 KIAA1109Q2LD37 5005 aa10.95□□□□□ -0.66
CLN3-230ENST00000568076 A8MU10 97 aa10.88□□□□□ -0.67
CLN3-230ENST00000568076 EPPK1P58107 5090 aaKnown RBP10.83□□□□□ -0.68
CLN3-230ENST00000568076 A6NED7 52 aa10.81□□□□□ -0.68
CLN3-230ENST00000568076 SPINK7P58062 85 aa10.8□□□□□ -0.68
CLN3-230ENST00000568076 SEC61GP60059 68 aa10.79□□□□□ -0.68
CLN3-230ENST00000568076 MYCBP2O75592 4640 aa10.79□□□□□ -0.68
CLN3-230ENST00000568076 LCA10Q71F78 164 aa10.78□□□□□ -0.68
CLN3-230ENST00000568076 MT1HL1P0DM35 61 aa10.77□□□□□ -0.68
CLN3-230ENST00000568076 DMBT1Q9UGM3 2413 aaPredicted RBP10.76□□□□□ -0.69
CLN3-230ENST00000568076 KRTAP3-1Q9BYR8 98 aa10.74□□□□□ -0.69
CLN3-230ENST00000568076 A0A1B0GU69 56 aa10.69□□□□□ -0.7
CLN3-230ENST00000568076 CDC42SE1Q9NRR8 79 aa10.68□□□□□ -0.7
CLN3-230ENST00000568076 XP32Q5T750 250 aa10.66□□□□□ -0.7
CLN3-230ENST00000568076 ATP11AUNQ6ZP68 121 aa10.66□□□□□ -0.7
CLN3-230ENST00000568076 RPL37P61927 97 aaKnown RBP10.65□□□□□ -0.7
CLN3-230ENST00000568076 COX6B2Q6YFQ2 88 aa10.58□□□□□ -0.72
CLN3-230ENST00000568076 SPTSSBQ8NFR3 76 aa10.57□□□□□ -0.72
CLN3-230ENST00000568076 KRTAP4-5Q9BYR2 181 aa10.54□□□□□ -0.72
CLN3-230ENST00000568076 PMAIP1Q13794 54 aa10.5□□□□□ -0.73
CLN3-230ENST00000568076 UQCR11O14957 56 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms