RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 C8orf87E5RJ46 101 aa9.33□□□□□ -0.92
CLN3-221ENST00000566057 JMJD7-PLA2G4BH0Y9G9 81 aa9.33□□□□□ -0.92
CLN3-221ENST00000566057 LOC110117498A0A087WWA1 95 aa9.32□□□□□ -0.92
CLN3-221ENST00000566057 C21orf62-AS1Q17RA5 79 aa9.32□□□□□ -0.92
CLN3-221ENST00000566057 TSTD3H0UI37 97 aa9.31□□□□□ -0.92
CLN3-221ENST00000566057 BATFQ16520 125 aa9.31□□□□□ -0.92
CLN3-221ENST00000566057 J3KT08 172 aa9.3□□□□□ -0.92
CLN3-221ENST00000566057 CRCT1Q9UGL9 99 aa9.3□□□□□ -0.92
CLN3-221ENST00000566057 LOC105371267A0A1B0GV96 52 aa9.29□□□□□ -0.92
CLN3-221ENST00000566057 C14orf132Q9NPU4 83 aa9.29□□□□□ -0.92
CLN3-221ENST00000566057 LYRM7Q5U5X0 104 aa9.27□□□□□ -0.93
CLN3-221ENST00000566057 HRES1P13985 223 aa9.26□□□□□ -0.93
CLN3-221ENST00000566057 A0A1B0GW54 56 aa9.25□□□□□ -0.93
CLN3-221ENST00000566057 PDE6GP18545 87 aa9.25□□□□□ -0.93
CLN3-221ENST00000566057 MPLKIPQ8TAP9 179 aa9.25□□□□□ -0.93
CLN3-221ENST00000566057 NDUFB1O75438 58 aa9.23□□□□□ -0.93
CLN3-221ENST00000566057 C9orf118A6NHY6 69 aa9.22□□□□□ -0.93
CLN3-221ENST00000566057 A8MWP4 228 aa9.22□□□□□ -0.93
CLN3-221ENST00000566057 IGKV3D-7A0A0C4DH55 119 aa9.21□□□□□ -0.94
CLN3-221ENST00000566057 TAX1BP3O14907 124 aa9.21□□□□□ -0.94
CLN3-221ENST00000566057 ZCCHC13Q8WW36 166 aaKnown RBP9.21□□□□□ -0.94
CLN3-221ENST00000566057 FAM236DA0A1B0GTK5 79 aa9.2□□□□□ -0.94
CLN3-221ENST00000566057 FAM236CP0DP71 79 aa9.2□□□□□ -0.94
CLN3-221ENST00000566057 Q8N9P0 234 aaPredicted RBP9.2□□□□□ -0.94
CLN3-221ENST00000566057 KRTAP9-8Q9BYQ0 159 aa9.2□□□□□ -0.94
CLN3-221ENST00000566057 C8orf17Q9NRJ1 99 aa9.19□□□□□ -0.94
CLN3-221ENST00000566057 RBM12B-AS1Q9P1G2 102 aa9.19□□□□□ -0.94
CLN3-221ENST00000566057 A0A1W2PPM0 123 aa9.17□□□□□ -0.94
CLN3-221ENST00000566057 MTURNQ8N3F0 131 aa9.17□□□□□ -0.94
CLN3-221ENST00000566057 NREPQ16612 68 aa9.16□□□□□ -0.94
CLN3-221ENST00000566057 H3BT86 120 aa9.14□□□□□ -0.95
CLN3-221ENST00000566057 SPINK7P58062 85 aa9.14□□□□□ -0.95
CLN3-221ENST00000566057 PRR15Q8IV56 129 aa9.14□□□□□ -0.95
CLN3-221ENST00000566057 Q6ZVQ6 151 aa9.11□□□□□ -0.95
CLN3-221ENST00000566057 MMP24-AS1A0A0U1RRL7 71 aa9.07□□□□□ -0.96
CLN3-221ENST00000566057 MT2AP02795 61 aa9.06□□□□□ -0.96
CLN3-221ENST00000566057 K7EQZ3 153 aa9.05□□□□□ -0.96
CLN3-221ENST00000566057 TMEM254Q8TBM7 123 aa9.04□□□□□ -0.96
CLN3-221ENST00000566057 MRPL34Q9BQ48 92 aaKnown RBP9.04□□□□□ -0.96
CLN3-221ENST00000566057 SPCS1Q9Y6A9 102 aa9.03□□□□□ -0.96
CLN3-221ENST00000566057 SMCPP49901 116 aaPredicted RBP9.02□□□□□ -0.97
CLN3-221ENST00000566057 hDV103S1A0JD37 113 aa9□□□□□ -0.97
CLN3-221ENST00000566057 WFDC13Q8IUB5 93 aa9□□□□□ -0.97
CLN3-221ENST00000566057 BPY2O14599 106 aa8.99□□□□□ -0.97
CLN3-221ENST00000566057 MT1FP04733 61 aa8.99□□□□□ -0.97
CLN3-221ENST00000566057 NDUFS5O43920 106 aa8.95□□□□□ -0.98
CLN3-221ENST00000566057 COL5A1-AS1Q5SY13 56 aa8.94□□□□□ -0.98
CLN3-221ENST00000566057 Q8N9L7 120 aa8.94□□□□□ -0.98
CLN3-221ENST00000566057 KRTAP10-10P60014 251 aa8.93□□□□□ -0.98
CLN3-221ENST00000566057 PRO0461Q9UI25 63 aa8.93□□□□□ -0.98
CLN3-221ENST00000566057 USH2AO75445 5202 aa8.93□□□□□ -0.98
CLN3-221ENST00000566057 Q5W150 140 aa8.9□□□□□ -0.98
CLN3-221ENST00000566057 KRTAP9-3Q9BYQ3 159 aa8.9□□□□□ -0.98
CLN3-221ENST00000566057 K7EP34 96 aa8.88□□□□□ -0.99
CLN3-221ENST00000566057 LCE2BO14633 110 aa8.87□□□□□ -0.99
CLN3-221ENST00000566057 CASC2Q6XLA1 102 aa8.87□□□□□ -0.99
CLN3-221ENST00000566057 LINC00846Q9NV44 126 aa8.87□□□□□ -0.99
CLN3-221ENST00000566057 SSPOA2VEC9 5147 aa8.86□□□□□ -0.99
CLN3-221ENST00000566057 IGKV2D-30A0A075B6S6 120 aa8.84□□□□□ -0.99
CLN3-221ENST00000566057 IGKV2-30P06310 120 aa8.84□□□□□ -0.99
CLN3-221ENST00000566057 HCG22E2RYF7 251 aa8.83□□□□□ -1
CLN3-221ENST00000566057 H1FX-AS1Q4G0G2 97 aa8.81□□□□□ -1
CLN3-221ENST00000566057 UBL5Q9BZL1 73 aa8.81□□□□□ -1
CLN3-221ENST00000566057 C7orf65Q6ZTY9 151 aa8.79□□□□□ -1
CLN3-221ENST00000566057 PCP4L1A6NKN8 68 aa8.75□□□□□ -1.01
CLN3-221ENST00000566057 CXCL6P80162 114 aa8.75□□□□□ -1.01
CLN3-221ENST00000566057 GTF2H5Q6ZYL4 71 aa8.75□□□□□ -1.01
CLN3-221ENST00000566057 F8W1H4 67 aa8.71□□□□□ -1.02
CLN3-221ENST00000566057 C4orf26Q17RF5 130 aa8.71□□□□□ -1.02
CLN3-221ENST00000566057 KRTAP19-1Q8IUB9 90 aa8.71□□□□□ -1.02
CLN3-221ENST00000566057 ETDBQ3ZM63 59 aa8.7□□□□□ -1.02
CLN3-221ENST00000566057 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.67□□□□□ -1.02
CLN3-221ENST00000566057 FCGBPQ9Y6R7 5405 aaPredicted RBP8.66□□□□□ -1.02
CLN3-221ENST00000566057 KRTAP3-1Q9BYR8 98 aa8.62□□□□□ -1.03
CLN3-221ENST00000566057 TP53AIP1Q9HCN2 124 aa8.57□□□□□ -1.04
CLN3-221ENST00000566057 KRTAP9-7A8MTY7 169 aa8.55□□□□□ -1.04
CLN3-221ENST00000566057 KRTAP19-6Q3LI70 58 aa8.53□□□□□ -1.04
CLN3-221ENST00000566057 C1orf64Q8NEQ6 169 aa8.53□□□□□ -1.04
CLN3-221ENST00000566057 C5orf47Q569G3 176 aa8.52□□□□□ -1.05
CLN3-221ENST00000566057 S4R3F8 94 aa8.48□□□□□ -1.05
CLN3-221ENST00000566057 ACYP1P07311 99 aa8.47□□□□□ -1.05
CLN3-221ENST00000566057 LCA10Q71F78 164 aa8.45□□□□□ -1.06
CLN3-221ENST00000566057 CYP4F30PQ9H0H9 118 aa8.45□□□□□ -1.06
CLN3-221ENST00000566057 MACF1Q9UPN3 7388 aaKnown RBP8.44□□□□□ -1.06
CLN3-221ENST00000566057 FAM240AA0A1B0GVK7 77 aa8.42□□□□□ -1.06
CLN3-221ENST00000566057 CSAG1Q6PB30 78 aa8.42□□□□□ -1.06
CLN3-221ENST00000566057 TRAV22A0A0B4J277 110 aa8.39□□□□□ -1.07
CLN3-221ENST00000566057 FAM236AA0A1B0GUQ0 79 aa8.38□□□□□ -1.07
CLN3-221ENST00000566057 FAM236BA0A1B0GV22 79 aa8.38□□□□□ -1.07
CLN3-221ENST00000566057 HIST1H4AP62805 103 aaKnown RBP8.38□□□□□ -1.07
CLN3-221ENST00000566057 SYNE2Q8WXH0 6885 aaKnown RBP8.38□□□□□ -1.07
CLN3-221ENST00000566057 ATP5EP2Q5VTU8 51 aa8.37□□□□□ -1.07
CLN3-221ENST00000566057 KRTAP3-3Q9BYR6 98 aa8.37□□□□□ -1.07
CLN3-221ENST00000566057 LOC101927531A0A1B0GV80 90 aa8.35□□□□□ -1.07
CLN3-221ENST00000566057 A0A087WVE0 104 aa8.34□□□□□ -1.07
CLN3-221ENST00000566057 UQCRQO14949 82 aa8.31□□□□□ -1.08
CLN3-221ENST00000566057 H0Y9P7 68 aa8.28□□□□□ -1.08
CLN3-221ENST00000566057 LINC00643Q86TS7 51 aa8.28□□□□□ -1.08
CLN3-221ENST00000566057 A0A1B0GV90 55 aa8.27□□□□□ -1.09
CLN3-221ENST00000566057 SPRR2GQ9BYE4 73 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms