RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 HRES1P13985 223 aa7.48□□□□□ -1.21
CLN3-213ENST00000565047 TRBV20-1A0A075B6N2 111 aa7.47□□□□□ -1.21
CLN3-213ENST00000565047 A0A1B0GVX0 72 aa7.46□□□□□ -1.22
CLN3-213ENST00000565047 Q6ZQT0 140 aa7.46□□□□□ -1.22
CLN3-213ENST00000565047 DSCR8Q96T75 97 aa7.46□□□□□ -1.22
CLN3-213ENST00000565047 NAA38Q9BRA0 125 aaKnown RBP7.46□□□□□ -1.22
CLN3-213ENST00000565047 SSPOA2VEC9 5147 aa7.45□□□□□ -1.22
CLN3-213ENST00000565047 VPS25Q9BRG1 176 aa7.45□□□□□ -1.22
CLN3-213ENST00000565047 C8orf87E5RJ46 101 aa7.44□□□□□ -1.22
CLN3-213ENST00000565047 C9JAW5 83 aa7.43□□□□□ -1.22
CLN3-213ENST00000565047 TAX1BP3O14907 124 aa7.42□□□□□ -1.22
CLN3-213ENST00000565047 LOC110117498A0A087WWA1 95 aa7.4□□□□□ -1.22
CLN3-213ENST00000565047 J3KT08 172 aa7.4□□□□□ -1.22
CLN3-213ENST00000565047 ATXN8Q156A1 80 aa7.4□□□□□ -1.22
CLN3-213ENST00000565047 C21orf62-AS1Q17RA5 79 aa7.4□□□□□ -1.22
CLN3-213ENST00000565047 C9orf118A6NHY6 69 aa7.38□□□□□ -1.23
CLN3-213ENST00000565047 MT2AP02795 61 aa7.38□□□□□ -1.23
CLN3-213ENST00000565047 COL5A1-AS1Q5SY13 56 aa7.38□□□□□ -1.23
CLN3-213ENST00000565047 Q8N9P0 234 aaPredicted RBP7.38□□□□□ -1.23
CLN3-213ENST00000565047 A0A1B0GW54 56 aa7.37□□□□□ -1.23
CLN3-213ENST00000565047 JMJD7-PLA2G4BH0Y9G9 81 aa7.37□□□□□ -1.23
CLN3-213ENST00000565047 ZCCHC13Q8WW36 166 aaKnown RBP7.36□□□□□ -1.23
CLN3-213ENST00000565047 RBM12B-AS1Q9P1G2 102 aa7.35□□□□□ -1.23
CLN3-213ENST00000565047 IGKV3D-7A0A0C4DH55 119 aa7.33□□□□□ -1.24
CLN3-213ENST00000565047 FAM236DA0A1B0GTK5 79 aa7.33□□□□□ -1.24
CLN3-213ENST00000565047 A8MWP4 228 aa7.33□□□□□ -1.24
CLN3-213ENST00000565047 FAM236CP0DP71 79 aa7.33□□□□□ -1.24
CLN3-213ENST00000565047 A0A1W2PPM0 123 aa7.32□□□□□ -1.24
CLN3-213ENST00000565047 MT1FP04733 61 aa7.32□□□□□ -1.24
CLN3-213ENST00000565047 PDE6GP18545 87 aa7.32□□□□□ -1.24
CLN3-213ENST00000565047 SPINK7P58062 85 aa7.32□□□□□ -1.24
CLN3-213ENST00000565047 C8orf17Q9NRJ1 99 aa7.32□□□□□ -1.24
CLN3-213ENST00000565047 C14orf132Q9NPU4 83 aa7.31□□□□□ -1.24
CLN3-213ENST00000565047 NDUFB1O75438 58 aa7.3□□□□□ -1.24
CLN3-213ENST00000565047 LYRM7Q5U5X0 104 aa7.29□□□□□ -1.24
CLN3-213ENST00000565047 KRTAP9-3Q9BYQ3 159 aa7.29□□□□□ -1.24
CLN3-213ENST00000565047 LCE2BO14633 110 aa7.27□□□□□ -1.25
CLN3-213ENST00000565047 PRR15Q8IV56 129 aa7.27□□□□□ -1.25
CLN3-213ENST00000565047 SPCS1Q9Y6A9 102 aa7.26□□□□□ -1.25
CLN3-213ENST00000565047 FCGBPQ9Y6R7 5405 aaPredicted RBP7.26□□□□□ -1.25
CLN3-213ENST00000565047 Q6ZVQ6 151 aa7.25□□□□□ -1.25
CLN3-213ENST00000565047 MMP24-AS1A0A0U1RRL7 71 aa7.23□□□□□ -1.25
CLN3-213ENST00000565047 NREPQ16612 68 aa7.23□□□□□ -1.25
CLN3-213ENST00000565047 K7EP34 96 aa7.22□□□□□ -1.25
CLN3-213ENST00000565047 MTURNQ8N3F0 131 aa7.22□□□□□ -1.25
CLN3-213ENST00000565047 KRTAP9-7A8MTY7 169 aa7.2□□□□□ -1.26
CLN3-213ENST00000565047 H3BT86 120 aa7.2□□□□□ -1.26
CLN3-213ENST00000565047 KRTAP10-10P60014 251 aa7.2□□□□□ -1.26
CLN3-213ENST00000565047 TMEM254Q8TBM7 123 aa7.19□□□□□ -1.26
CLN3-213ENST00000565047 MRPL34Q9BQ48 92 aaKnown RBP7.19□□□□□ -1.26
CLN3-213ENST00000565047 A0A1B0GV90 55 aa7.18□□□□□ -1.26
CLN3-213ENST00000565047 K7EQZ3 153 aa7.18□□□□□ -1.26
CLN3-213ENST00000565047 WFDC13Q8IUB5 93 aa7.18□□□□□ -1.26
CLN3-213ENST00000565047 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.16□□□□□ -1.26
CLN3-213ENST00000565047 GTF2H5Q6ZYL4 71 aa7.16□□□□□ -1.26
CLN3-213ENST00000565047 SMCPP49901 116 aaPredicted RBP7.15□□□□□ -1.26
CLN3-213ENST00000565047 PRO0461Q9UI25 63 aa7.15□□□□□ -1.26
CLN3-213ENST00000565047 hDV103S1A0JD37 113 aa7.14□□□□□ -1.27
CLN3-213ENST00000565047 KRTAP19-1Q8IUB9 90 aa7.13□□□□□ -1.27
CLN3-213ENST00000565047 MACF1Q9UPN3 7388 aaKnown RBP7.11□□□□□ -1.27
CLN3-213ENST00000565047 Q5W150 140 aa7.11□□□□□ -1.27
CLN3-213ENST00000565047 BPY2O14599 106 aa7.09□□□□□ -1.27
CLN3-213ENST00000565047 F8W1H4 67 aa7.06□□□□□ -1.28
CLN3-213ENST00000565047 H1FX-AS1Q4G0G2 97 aa7.06□□□□□ -1.28
CLN3-213ENST00000565047 Q8N9L7 120 aa7.06□□□□□ -1.28
CLN3-213ENST00000565047 SYNE2Q8WXH0 6885 aaKnown RBP7.05□□□□□ -1.28
CLN3-213ENST00000565047 NDUFS5O43920 106 aa7.04□□□□□ -1.28
CLN3-213ENST00000565047 ETDBQ3ZM63 59 aa7.02□□□□□ -1.29
CLN3-213ENST00000565047 KRTAP19-6Q3LI70 58 aa7.01□□□□□ -1.29
CLN3-213ENST00000565047 CASC2Q6XLA1 102 aa7.01□□□□□ -1.29
CLN3-213ENST00000565047 IGKV2D-30A0A075B6S6 120 aa7□□□□□ -1.29
CLN3-213ENST00000565047 IGKV2-30P06310 120 aa7□□□□□ -1.29
CLN3-213ENST00000565047 LINC00846Q9NV44 126 aa7□□□□□ -1.29
CLN3-213ENST00000565047 C7orf65Q6ZTY9 151 aa6.99□□□□□ -1.29
CLN3-213ENST00000565047 HCG22E2RYF7 251 aa6.98□□□□□ -1.29
CLN3-213ENST00000565047 CXCL6P80162 114 aa6.94□□□□□ -1.3
CLN3-213ENST00000565047 C4orf26Q17RF5 130 aa6.93□□□□□ -1.3
CLN3-213ENST00000565047 KRTAP3-1Q9BYR8 98 aa6.93□□□□□ -1.3
CLN3-213ENST00000565047 UBL5Q9BZL1 73 aa6.92□□□□□ -1.3
CLN3-213ENST00000565047 C5orf47Q569G3 176 aa6.8□□□□□ -1.32
CLN3-213ENST00000565047 TP53AIP1Q9HCN2 124 aa6.79□□□□□ -1.32
CLN3-213ENST00000565047 C1orf64Q8NEQ6 169 aa6.78□□□□□ -1.32
CLN3-213ENST00000565047 ACYP1P07311 99 aa6.77□□□□□ -1.33
CLN3-213ENST00000565047 FAM240AA0A1B0GVK7 77 aa6.76□□□□□ -1.33
CLN3-213ENST00000565047 LCA10Q71F78 164 aa6.76□□□□□ -1.33
CLN3-213ENST00000565047 S4R3F8 94 aa6.75□□□□□ -1.33
CLN3-213ENST00000565047 J3QR89 54 aa6.74□□□□□ -1.33
CLN3-213ENST00000565047 KRTAP3-3Q9BYR6 98 aa6.74□□□□□ -1.33
CLN3-213ENST00000565047 MT1BP07438 61 aa6.73□□□□□ -1.33
CLN3-213ENST00000565047 CSAG1Q6PB30 78 aa6.72□□□□□ -1.33
CLN3-213ENST00000565047 SPRR2GQ9BYE4 73 aa6.72□□□□□ -1.33
CLN3-213ENST00000565047 CYP4F30PQ9H0H9 118 aa6.71□□□□□ -1.34
CLN3-213ENST00000565047 KRTAP19-8Q3LI54 63 aa6.7□□□□□ -1.34
CLN3-213ENST00000565047 K7ERU9 68 aa6.68□□□□□ -1.34
CLN3-213ENST00000565047 KRTAP6-3Q3LI67 103 aa6.68□□□□□ -1.34
CLN3-213ENST00000565047 A0A087WVE0 104 aa6.66□□□□□ -1.34
CLN3-213ENST00000565047 FAM236AA0A1B0GUQ0 79 aa6.66□□□□□ -1.34
CLN3-213ENST00000565047 FAM236BA0A1B0GV22 79 aa6.66□□□□□ -1.34
CLN3-213ENST00000565047 LINC00643Q86TS7 51 aa6.66□□□□□ -1.34
CLN3-213ENST00000565047 NEBP20929 6669 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms